BAC Information

Click to search

BAC

Clone NameB6Ng01-048E22
Chromosome6 (Build37)8 (Build37)
Map Location 18,835,441 - 18,835,96855,758,150 - 55,759,119
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048E22.bB6Ng01-048E22.g
ACCDH872905DH872906
length873946
definitionDH872905|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E22, 5' end.DH872906|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(55,758,150 - 55,759,119)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tatggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttggaataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgtcttgcagaagctctgcaattttat
gaggtcccatttatcgattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggcttttccctact
ttctcctttataagtttcagtgtctttggttttatgtggagttctttaat
ccacttagatttgaccttagtacaaggagataagaatggatcaattccca
ttcttctacatgataacaactagttgtgccagcaccatttgttgaagatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctgtaccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaggtctggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggtcttttgttattccagatga
atctgccgattgccctttttaattcattgaagaattgagttggaattttg
gtggggattgcatgaatctgtagattgctttttggcaagatagccatttt
aaatgtgatcctgccaatccatgagcatgggagatctttccatctctgag
atcttcttaatgttttcttcaga
gaattcctttttccagtcagacatgcaggtagcaggtgattaaacttggg
tcgctgggtgtagcaataagcactgttacccacaaactatttcattccat
taccaccctataactgataatatttataattgaaaatttcaaaagcataa
ttgtacaattgtgccaatgtaagagagaaaaattcaatgaatgaattttc
tatacaactttcatgttttatggtctgtttatttagtctatagcccctac
tggacttttttgaacaaatctccaataacattttcagatcaatgaataat
tcaatatagaagttaaaaaggcaggcatggctctattatcaagccaagta
ctataattaaaatcccccaaattatcattagctctgaagtattaaatgaa
tatctatgtcaggaaggatttttatcatgtaaggtctactaaacattaga
gacataactatacaaatatagccaaagttcaataacattcaaacatctag
atttactgtaggttttctatgtggctgtcacttgtccaggaatcacaatt
cttctgccagtgagctgtgctaaaatcttacacctcacagcagctgagct
gatcaaatattgccagtaatttgcctctactattatatggaacaagatta
accctgggggaagaagataaatttgaataaaattcaggaaagtcattgat
ttcatgctgggttgtaataaaagaaaatcttacctggagcccaagaagag
caaaatgaccccttcgttacccggagaggtatacactgctgttaatgtgt
ttttttcccacacctttatagtgccatcaatgaagctgttgctaaaattt
ggatcatcagtttgatttgcagtcaataagttcacgtgtcctagatcatg
atttttttaatcacatgagaaccctaatataagcatacataataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-048E22.b_44_571 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      ||||||||||||||||||| ||||||||||| |||||||| |||||||||
seq2  CTAAAACCATCCAGTGGAAAAAAGACAGCATCTTCAACAAATGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||| ||||||||| |||||||||||| |||| ||||||| ||||||
seq2  CACAACTAGTTGTTATCATGTAGAAGAATGGGAATTGATCCATTCTTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| |||||||||||||||||||||||||| || ||||| ||||||||||
seq2  TCCTTGTACTAAGGTCAAATCTAAGTGGATTAAAGAACTCCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      || ||||||||||||||||| |||||||||| ||||||||||| ||||||
seq2  CAAAGACACTGAAACTTATAAAGGAGAAAGTAGGGAAAAGCCTCGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| |||||||| |||||||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | ||||||||| ||||||||||| || ||| | || || |||||||
seq2  AAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCAGAGCTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      ||||||||||||||| | ||||| |||||||||||||||||||| |||||
seq2  AGGATCTTTACCTATTCCAAATCGGATAGGGGACTAATATCCAATATATA  450

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
      ||||||||||||||||||||||| || ||||||||||||||||||||| |
seq2  TAAAGAACTCAAGAAGGTGGACTCCATAAAATCAAATAACCCCATTAA-A  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr8_55758150_55759119
seq2: B6Ng01-048E22.g_65_1010

seq1  GAATTCCTTTTTCCAGTCAGACATGCAGGTAGCAGGTGATTAAACTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTCCAGTCAGACATGCAGGTAGCAGGTGATTAAACTTGGG  50

seq1  TCGCTGGGTGTAGCAATAAGCACTGTTACCCACAAACTATTTCATTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGGTGTAGCAATAAGCACTGTTACCCACAAACTATTTCATTCCAT  100

seq1  TACCACCCTATAACTGATAATATTTATAATTGAAAATTTCAAAAGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCCTATAACTGATAATATTTATAATTGAAAATTTCAAAAGCATAA  150

seq1  TTGTACAATTGTGCCAATGTAAGAGAGAAAAATTCAATGAATGAATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAATTGTGCCAATGTAAGAGAGAAAAATTCAATGAATGAATTTTC  200

seq1  TATACAACTTTCATGTTTTATGGTCTGTTTATTTAGTCTATAGCCCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACTTTCATGTTTTATGGTCTGTTTATTTAGTCTATAGCCCCTAC  250

seq1  TGGACTTTTTTGAACAAATCTCCAATAACATTTTCAGATCAATGAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTTTGAACAAATCTCCAATAACATTTTCAGATCAATGAATAAT  300

seq1  TCAATATAGAAGTTAAAAAGGCAGGCATGGCTCTATTATCAAGCCAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATAGAAGTTAAAAAGGCAGGCATGGCTCTATTATCAAGCCAAGTA  350

seq1  CTATAATTAAAATCCCCCAAATTATCATTAGCTCTGAAGTATTAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTAAAATCCCCCAAATTATCATTAGCTCTGAAGTATTAAATGAA  400

seq1  TATCTATGTCAGGAAGGATTTTTATCATGTAAGGTCTACTAAACATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGTCAGGAAGGATTTTTATCATGTAAGGTCTACTAAACATTAGA  450

seq1  GACATAACTATACAAATATAGCCAAAGTTCAATAACATTCAAACATCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACTATACAAATATAGCCAAAGTTCAATAACATTCAAACATCTAG  500

seq1  ATTTACTGTAGGTTTTCTATGTGGCTGTCACTTGTCCAGGAATCACAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGTAGGTTTTCTATGTGGCTGTCACTTGTCCAGGAATCACAATT  550

seq1  CTTCTGCCAGTGAGCTGTGCTAAAATCTTACACCTCACAGCAGCTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAGTGAGCTGTGCTAAAATCTTACACCTCACAGCAGCTGAGCT  600

seq1  GATCAAATATTGCCAGTAATTTGCCTCTACTATTATATGGAACAAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATATTGCCAGTAATTTGCCTCTACTATTATATGGAACAAGATTA  650

seq1  ACCCTGGGGGAAGAAGATAAATTTGAATAAAATTCAGGAAAGTCATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGGGAAGAAGATAAATTTGAATAAAATTCAGGAAAGTCATTGAT  700

seq1  TTCATGCTGGGTTGTAATAAAAGAAAATCTTACCTGGAGCCCAAGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCATGCTGGGTTGTAATAAAAGAAAATCTTACCTGGAGCCCAAG-AAGA  749

seq1  GCAAAAATGACCCCTTCGTTACCCGGAGAGGTATACACTGCTGTTAATGT  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AAAATGACCCCTTCGTTACCCGGAGAGGTATACACTGCTGTTAATGT  798

seq1  GTTTATATCCCACACCTTTATAGTGCCATCAAATGAAGCTGTTGCTAAAA  850
      |||| | ||||||||||||||||||||||| |||||||||||||||||| 
seq2  GTTTTTTTCCCACACCTTTATAGTGCCATC-AATGAAGCTGTTGCTAAA-  846

seq1  CATTTGGATCATCAGGTTTGAATTTGCAGTCAAATATAGTTTCCACGTGT  900
       ||||||||||||| ||||| |||||||||| |||| ||||  |||||||
seq2  -ATTTGGATCATCA-GTTTG-ATTTGCAGTC-AATA-AGTT--CACGTGT  889

seq1  CCCTAGGATTCATGATTTTTTTTAAATCACATTGGAAGAAACCCTTATTA  950
       |||||   |||||||||||||  ||||||||  |    |||||    ||
seq2  -CCTAG--ATCATGATTTTTTT--AATCACATGAG----AACCC----TA  926

seq1  ATA-AAGCATAACATAATACA  970
      ||| |||||| ||||||||||
seq2  ATATAAGCAT-ACATAATACA  946