BAC Information

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BAC

Clone NameB6Ng01-048F23
Chromosome8 (Build37)
Map Location 37,007,763 - 37,101,842
singlet/doubletdoublet
Overlap geneLOC671641
Upstream geneTnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
Downstream geneD8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048F23.bB6Ng01-048F23.g
ACCDH872949DH872950
length4431,020
definitionDH872949|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F23, 5' end.DH872950|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,101,394 - 37,101,842)(37,007,763 - 37,008,798)
sequence
ttccagtgatttttttttacattgatgtctgctcctgtcactattattgt
ttattatgcaactttgccttttcagttttaagaactgatagtccctgtcc
tacatggaaaaagagggcacggacctcactctgtgtctttgcttactttt
cctgacacaagcgagatcgaatgacagggctacatcaaaacagctgttct
tcagtgtctccaaggaataccgaagcttctcataggaaacagcatggggc
ttgcatgtaaactccacacacagcctcctggatgcttcaaacaatcttta
gatggctgagatatcttgagatgtaaatgttagttacacattgattataa
tacattgtttagagaatagcaagcaaaaagatgtctccaagtccaaacca
gaggcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctctaagtgctacaacacacatctctgggatttttcagatgaaga
actgaagcattgggaagatgctctcaagatcattggactctgaattcgca
gagccaggctgctgatggaggagctgggagcactgcagaggacacccact
gtgtttgctctaagtggcctctagggctctggtgacagtgactgatctgg
tctcccagcttctgaaggtcttaaaactcactctggtctttcccggagaa
aagctcatagcctcaagtcatttttttttttttttttttttttgcctctt
ttgggagcatttactgtacatgctaaagaatgtttcatttttgtttttat
tttgttctgtctttgagaaatgttctcacgctgcctaacctggttccaaa
ctcaccagggagccaaagacaacattgaactcatgatcctcctgcctccg
tgcctccaggaccgtgacccaggcatgcaccaacccacccaactctgaag
gtgcgtttcaagcagtagggcatgcttccccacaggagcacgcaggaacc
tgcgtcaaaaacaatccacttgtcaagggcaccggtagaattattccaat
aatatttggagtcccttgaagggaaagaaaagaaaaacagaataaaagtt
cctcattattaacgttctacaagtccataatcattttttatgtttcaaac
ttggacacgtggctgagatgcctatttacatattaagtggaactgggtct
ccaagtcctcccagccttcctcagtccctactgttataggggcgtggctg
tcatactccactctctaccctgacttttcagcccaggggctggggtaccc
ttcctccagaaggttcttccctatacaacgcaggacattagttacccacc
cctccctgggctccttttgtactctggctctggctgttgtacttagttcc
cctctctttccctccttcttccacatggtcaggttaagtcactctggctc
tcccgaatgtctgccctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_37101394_37101842
seq2: B6Ng01-048F23.b_42_490 (reverse)

seq1  CACACACACACACACACACACACACACACACACAGAGTGCCTCTGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGAGTGCCTCTGGTTTG  50

seq1  GACTTGGAGACATCTTTTTGCTTGCTATTCTCTAAACAATGTATTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGAGACATCTTTTTGCTTGCTATTCTCTAAACAATGTATTATAAT  100

seq1  CAATGTGTAACTAACATTTACATCTCAAGATATCTCAGCCATCTAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTAACTAACATTTACATCTCAAGATATCTCAGCCATCTAAAGAT  150

seq1  TGTTTGAAGCATCCAGGAGGCTGTGTGTGGAGTTTACATGCAAGCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGCATCCAGGAGGCTGTGTGTGGAGTTTACATGCAAGCCCCAT  200

seq1  GCTGTTTCCTATGAGAAGCTTCGGTATTCCTTGGAGACACTGAAGAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCCTATGAGAAGCTTCGGTATTCCTTGGAGACACTGAAGAACAG  250

seq1  CTGTTTTGATGTAGCCCTGTCATTCGATCTCGCTTGTGTCAGGAAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGATGTAGCCCTGTCATTCGATCTCGCTTGTGTCAGGAAAAGTA  300

seq1  AGCAAAGACACAGAGTGAGGTCCGTGCCCTCTTTTTCCATGTAGGACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGACACAGAGTGAGGTCCGTGCCCTCTTTTTCCATGTAGGACAGG  350

seq1  GACTATCAGTTCTTAAAACTGAAAAGGCAAAGTTGCATAATAAACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCAGTTCTTAAAACTGAAAAGGCAAAGTTGCATAATAAACAATAA  400

seq1  TAGTGACAGGAGCAGACATCAATGTAAAAAAAAATCACTGGAAGAATTC  449
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAGGAGCAGACATCAATGTAAAAAAAAATCACTGGAAGAATTC  449

seq1: chr8_37007763_37008798
seq2: B6Ng01-048F23.g_67_1086

seq1  GAATTCTCTAAGTGCTACAACACACATCTCTGGGATTTTTCAGATGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGTGCTACAACACACATCTCTGGGATTTTTCAGATGAAGA  50

seq1  ACTGAAGCATTGGGAAGATGCTCTCAAGATCATTGGACTCTGAATTCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCATTGGGAAGATGCTCTCAAGATCATTGGACTCTGAATTCGCA  100

seq1  GAGCCAGGCTGCTGATGGAGGAGCTGGGAGCACTGCAGAGGACACCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGCTGCTGATGGAGGAGCTGGGAGCACTGCAGAGGACACCCACT  150

seq1  GTGTTTGCTCTAAGTGGCCTCTAGGGCTCTGGTGACAGTGACTGATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTCTAAGTGGCCTCTAGGGCTCTGGTGACAGTGACTGATCTGG  200

seq1  TCTCCCAGCTTCTGAAGGTCTTAAAACTCACTCTGGTCTTTCCCGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGCTTCTGAAGGTCTTAAAACTCACTCTGGTCTTTCCCGGAGAA  250

seq1  AAGCTCATAGCCTCAAGTCATTTTTTTTTTTTTTTTTTTTTTTGCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATAGCCTCAAGTCATTTTTTTTTTTTTTTTTTTTTTTGCCTCTT  300

seq1  TTGGGAGCATTTACTGTACATGCTAAAGAATGTTTCATTTTTGTTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCATTTACTGTACATGCTAAAGAATGTTTCATTTTTGTTTTTAT  350

seq1  TTTGTTCTGTCTTTGAGAAATGTTCTCACGCTGCCTAACCTGGTTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGTCTTTGAGAAATGTTCTCACGCTGCCTAACCTGGTTCCAAA  400

seq1  CTCACCAGGGAGCCAAAGACAACATTGAACTCATGATCCTCCTGCCTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGGGAGCCAAAGACAACATTGAACTCATGATCCTCCTGCCTCCG  450

seq1  TGCCTCCAGGACCGTGACCCAGGCATGCACCAACCCACCCAACTCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGGACCGTGACCCAGGCATGCACCAACCCACCCAACTCTGAAG  500

seq1  GTGCGTTTCAAGCAGTAGGGCATGCTTCCCCACAGGAGCACGCAGGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTTTCAAGCAGTAGGGCATGCTTCCCCACAGGAGCACGCAGGAACC  550

seq1  TGCGTCAAAAACAATCCACTTGTCAAGGGCACCGGTAGAATTATTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCAAAAACAATCCACTTGTCAAGGGCACCGGTAGAATTATTCCAAT  600

seq1  AATATTTGGAGTCCCTTGAAGGGAAAGAAAAGAAAAACAGAATAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGGAGTCCCTTGAAGGGAAAGAAAAGAAAAACAGAATAAAAGTT  650

seq1  CCTCATTATTAACGTTCTACAAGTCCATAATCA-TTTTTATGTTTCAAAC  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCATTATTAACGTTCTACAAGTCCATAATCATTTTTTATGTTTCAAAC  700

seq1  TTGGACACGTGGCTGAGATGCCTATTTAACATATTAAAGTGGAACT-GGT  748
      ||||||||||||||||||||||||||| ||||||| |||||||||| |||
seq2  TTGGACACGTGGCTGAGATGCCTATTT-ACATATT-AAGTGGAACTGGGT  748

seq1  CTCCAAGTCCTCCCAGCCTTCCTCAGTCCCTACCTGTTATA-GGGCGTGG  797
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  CTCCAAGTCCTCCCAGCCTTCCTCAGTCCCTA-CTGTTATAGGGGCGTGG  797

seq1  CTGTCATACTCCACTCTCTACCCTGAACTTTTCAGCCCAGGGCCTGGGGT  847
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  CTGTCATACTCCACTCTCTACCCTG-ACTTTTCAGCCCAGGGGCTGGGGT  846

seq1  ACCCTTCCTCCAG-AGGCTCTTCCCTATACAACGCA-GACATTAGTTACC  895
      ||||||||||||| ||| |||||||||||||||||| |||||||||||||
seq2  ACCCTTCCTCCAGAAGGTTCTTCCCTATACAACGCAGGACATTAGTTACC  896

seq1  CACCCCTCCCTTGGCTCCTTTTGTACCTCTGGCCTCCTGGCTGTTGTACT  945
      ||||||||||| ||||||||||||| |||||||   ||||||||||||||
seq2  CACCCCTCCCTGGGCTCCTTTTGTA-CTCTGGC--TCTGGCTGTTGTACT  943

seq1  TAGTTCCCCCCTCTCCTTTCCCCTCCCCTTCTTCCCACATGGTTCAGGGT  995
      ||||||||| ||   ||||||   | ||||||| |||||||| ||| |||
seq2  TAGTTCCCCTCT---CTTTCC---CTCCTTCTT-CCACATGG-TCA-GGT  984

seq1  TAAGGTCACTCCTGGCTCTCCCCGATGTGTCTGCCCCTGGC  1036
      ||| |||||| |||||||||||  |  |||||| |||||||
seq2  TAA-GTCACT-CTGGCTCTCCCGAA--TGTCTG-CCCTGGC  1020