BAC Information

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BAC

Clone NameB6Ng01-048G06
Chromosome8 (Build37)
Map Location 87,883,484 - 88,029,811
singlet/doubletdoublet
Overlap geneD830007F02Rik, 4921524J17Rik, Gpt2
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l
Downstream geneDnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G06.bB6Ng01-048G06.g
ACCDH872963DH872964
length1,1311,047
definitionDH872963|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G06, 5' end.DH872964|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,028,675 - 88,029,811)(87,883,484 - 87,884,563)
sequence
gaattcagaaggatggaggtacttatacttaagtacctgactcaccaaaa
gatggcatgatcgatcactgcctcggtacacgggaaggtgagtatgcatc
tgtacacactctgaacatcagccaccttccacacactcaacagtcacgtg
tttgctgataggcccagacccattggaacccacattcacttcacatcctc
gagggccttgcaagctgtgcctcacccaagctgtttccaccacaagcctg
caggatccgccgcgctcgtttcttagcgtcttctgggaagctggggctgt
ttagtaggtttgggtaggtgcagagtgccatcacctatagaaagacggta
cagttgagtttacaatatggtacccaagcactcaggacaccgagcaaggt
aaagtgagaagaaaacaaccccaaacactgcgtcacagcctctccatgag
ggctgggcagaaggagctcagggtaccaaagagcaagatgctggctctca
gcagcaggagagaatttgatggatgagaggcaacacaaccatggcctggc
ccaagagtggggagccaaaggagaagtcatggtagaacatgagggttcgc
cactgccctggttcccactcatctacaaacactggacccaaacgtccagg
atcataagaacgagagggtctcttaggcaaggggccaagccacagtggga
agcaaacccttgctgacaggaacaaggttgtaagacccctgaagacacat
agcctgagacctcctcctccttgtcttcctttggactaatccccagatct
gaaagccggaacggcttttcctccctgtaacacaaaatcacccaacacat
gaaaactgagaggattagcttaaggctttgtgtgactaggtgccagtaaa
ccacgcacacctgtttaaagctggcagctgaggaccacgccaggcttact
aaagggaagaaccggtcacatctctgataccagtcagtgacaaccagctt
cttggcttttcctcctctgataatgagcactaacctagcctcccccctct
ccagggcattatgaagatccgaaagaacgaatgatggcttcgagcacttg
aaccctgcaggacaagttatggacactgtgg
gaattcaggttcaagacccagcacctacacaattgtctataatcccagtc
ccagaagatctgttgtcctctctggcctcctcaaggcacacagacatatg
cagccaaaacaccaatacacactgggaaaagaaggaaggatgtttgtgag
tgtgtacatgtgtgtaaacaaacaactacttataatgtgtttatgtagac
tggaccacacaggaaacatagggacttcttaaatgatcaggagtaaagac
tttaaagaaggtcagaggctagacttctcttatcagaccttattttgtca
atttgactttagaaccctaaaaatattattcaaaaaaaaaaagaattttg
ttttcttgaaatagcatctcactgtgtagccctgaggggcctgaaactca
cagagatctgcctacttctgccttctgtgtgccaggattaaaggtgtgta
ccagcatgccaagcatgtaaagttttaaaaaaaagaattaactttttaaa
aaagcaatccagctaaactcttgttttgttttgttctttaggttttttga
gaagggatctttgttgtagccctggctgtcctggaactcactctgttgac
catgcaggcctttaattcagagatccatctgtctgtctctgcctaccgag
tgctgggatcaaaaacccactgaccagtctaactaaactcttaattccat
cactctggggatggaggcaggaaaaccagaagttcaagtggagtttgaac
tcagctatacagtagagttcaagaccagtgtgaactacatgagaccctgt
ttcaaaagccaaacaaaattagacgatcatacacaggtggtttggttagt
acttttattctgcagttagaataagcggtatagccactcgcttccacagc
gtctagagcgtcagcttgcacactactgtagtcagtacatgtttgcttca
ctcagcacttctgctgctctgtctaagaacaaataacaacatcacaacat
aaaaagtcttcaactcaaactctgtgacacctacgcatgcttaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88028675_88029811
seq2: B6Ng01-048G06.b_41_1171 (reverse)

seq1  CCACAGTTGTCC-TAACTTGTCCTGCATGGTGTCAGCTGCTCGAAGCCAT  49
      |||||| ||||| |||||||||||||| ||| |||  |||||||||||||
seq2  CCACAG-TGTCCATAACTTGTCCTGCAGGGT-TCAAGTGCTCGAAGCCAT  48

seq1  CA-TCTGTCTCTCTGATCTTCATAATGCCCCTGGGAGAGGGGGAGGCTAG  98
      || ||  ||| || ||||||||||||||||  | ||| ||||||||||||
seq2  CATTCGTTCTTTCGGATCTTCATAATGCCCTGGAGAG-GGGGGAGGCTAG  97

seq1  GTTAGTGCTCATTATACAGAGGAGGAAAAGCCAAGAAGCTGGTTTGTCAC  148
      ||||||||||||||| |||||||||||||||||||||||||| |||||| 
seq2  GTTAGTGCTCATTAT-CAGAGGAGGAAAAGCCAAGAAGCTGG-TTGTCA-  144

seq1  CTGACTGGTATCAGAGATGTGACCGGTTCTTCCCTTTAGTAAGCCTGGCG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGTATCAGAGATGTGACCGGTTCTTCCCTTTAGTAAGCCTGGCG  194

seq1  TGGTCCCTCAGCTGCCAGCTTTAAACAGGTGTGCGTGGTTTTACTGGCAC  248
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGT-CCTCAGCTGCCAGCTTTAAACAGGTGTGCGTGG-TTTACTGGCAC  242

seq1  CTAGTCACACAAAGCCTTAAGCTAATCCTCTCAGTTTTCATGTGTTGGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCACACAAAGCCTTAAGCTAATCCTCTCAGTTTTCATGTGTTGGGT  292

seq1  GATTTTGTGTTACAGGGAGGAAAAGCCGTTCCGGCTTTCAGATCTGGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTGTTACAGGGAGGAAAAGCCGTTCCGGCTTTCAGATCTGGGGA  342

seq1  TTAGTCCAAAGGAAGACAAGGAGGAGGAGGTCTCAGGCTATGTGTCTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAAAGGAAGACAAGGAGGAGGAGGTCTCAGGCTATGTGTCTTCA  392

seq1  GGGGTCTTACAACCTTGTTCCTGTCAGCAAGGGTTTGCTTCCCACTGTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTACAACCTTGTTCCTGTCAGCAAGGGTTTGCTTCCCACTGTGG  442

seq1  CTTGGCCCCTTGCCTAAGAGACCCTCTCGTTCTTATGATCCTGGACGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCCTTGCCTAAGAGACCCTCTCGTTCTTATGATCCTGGACGTTT  492

seq1  GGGTCCAGTGTTTGTAGATGAGTGGGAACCAGGGCAGTGGCGAACCCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGTGTTTGTAGATGAGTGGGAACCAGGGCAGTGGCGAACCCTCA  542

seq1  TGTTCTACCATGACTTCTCCTTTGGCTCCCCACTCTTGGGCCAGGCCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACCATGACTTCTCCTTTGGCTCCCCACTCTTGGGCCAGGCCATG  592

seq1  GTTGTGTTGCCTCTCATCCATCAAATTCTCTCCTGCTGCTGAGAGCCAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTGCCTCTCATCCATCAAATTCTCTCCTGCTGCTGAGAGCCAGC  642

seq1  ATCTTGCTCTTTGGTACCCTGAGCTCCTTCTGCCCAGCCCTCATGGAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTCTTTGGTACCCTGAGCTCCTTCTGCCCAGCCCTCATGGAGAG  692

seq1  GCTGTGACGCAGTGTTTGGGGTTGTTTTCTTCTCACTTTACCTTGCTCGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACGCAGTGTTTGGGGTTGTTTTCTTCTCACTTTACCTTGCTCGG  742

seq1  TGTCCTGAGTGCTTGGGTACCATATTGTAAACTCAACTGTACCGTCTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAGTGCTTGGGTACCATATTGTAAACTCAACTGTACCGTCTTTC  792

seq1  TATAGGTGATGGCACTCTGCACCTACCCAAACCTACTAAACAGCCCCAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGATGGCACTCTGCACCTACCCAAACCTACTAAACAGCCCCAGC  842

seq1  TTCCCAGAAGACGCTAAGAAACGAGCGCGGCGGATCCTGCAGGCTTGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAGACGCTAAGAAACGAGCGCGGCGGATCCTGCAGGCTTGTGG  892

seq1  TGGAAACAGCTTGGGTGAGGCACAGCTTGCAAGGCCCTCGAGGATGTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGCTTGGGTGAGGCACAGCTTGCAAGGCCCTCGAGGATGTGAA  942

seq1  GTGAATGTGGGTTCCAATGGGTCTGGGCCTATCAGCAAACACGTGACTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTGGGTTCCAATGGGTCTGGGCCTATCAGCAAACACGTGACTGT  992

seq1  TGAGTGTGTGGAAGGTGGCTGATGTTCAGAGTGTGTACAGATGCATACTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTGGAAGGTGGCTGATGTTCAGAGTGTGTACAGATGCATACTC  1042

seq1  ACCTTCCCGTGTACCGAGGCAGTGATCGATCATGCCATCTTTTGGTGAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCGTGTACCGAGGCAGTGATCGATCATGCCATCTTTTGGTGAGT  1092

seq1  CAGGTACTTAAGTATAAGTACCTCCATCCTTCTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTTAAGTATAAGTACCTCCATCCTTCTGAATTC  1131

seq1: chr8_87883484_87884563
seq2: B6Ng01-048G06.g_65_1111

seq1  GAATTCAGGTTCAAGACCCAGCACCTACACAATTGTCTATAATCCCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCAAGACCCAGCACCTACACAATTGTCTATAATCCCAGTC  50

seq1  CCAGAAGATCTGTTGTCCTCTCTGGCCTCCTCAAGGCACACAGACATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATCTGTTGTCCTCTCTGGCCTCCTCAAGGCACACAGACATATG  100

seq1  CAGCCAAAACACCAATACACACTGGGAAAAGAAGGAAGGATGTTTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAACACCAATACACACTGGGAAAAGAAGGAAGGATGTTTGTGAG  150

seq1  TGTGTACATGTGTGTAAACAAACAACTACTTATAATGTGTTTATGTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATGTGTGTAAACAAACAACTACTTATAATGTGTTTATGTAGAC  200

seq1  TGGACCACACAGGAAACATAGGGACTTCTTAAATGATCAGGAGTAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACACAGGAAACATAGGGACTTCTTAAATGATCAGGAGTAAAGAC  250

seq1  TTTAAAGAAGGTCAGAGGCTAGACTTCTCTTATCAGACCTTATTTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGGTCAGAGGCTAGACTTCTCTTATCAGACCTTATTTTGTCA  300

seq1  ATTTGACTTTAGAACCCTAAAAATATTATTCAAAAAAAAAAAGAATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTTTAGAACCCTAAAAATATTATTCAAAAAAAAAAAGAATTTTG  350

seq1  TTTTCTTGAAATAGCATCTCACTGTGTAGCCCTGAGGGGCCTGAAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGAAATAGCATCTCACTGTGTAGCCCTGAGGGGCCTGAAACTCA  400

seq1  CAGAGATCTGCCTACTTCTGCCTTCTGTGTGCCAGGATTAAAGGTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTGCCTACTTCTGCCTTCTGTGTGCCAGGATTAAAGGTGTGTA  450

seq1  CCAGCATGCCAAGCATGTAAAGTTTTAAAAAAAAGAATTAACTTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGCCAAGCATGTAAAGTTTTAAAAAAAAGAATTAACTTTTTAAA  500

seq1  AAAGCAATCCAGCTAAACTCTTGTTTTGTTTTGTTCTTTAGGTTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCCAGCTAAACTCTTGTTTTGTTTTGTTCTTTAGGTTTTTTGA  550

seq1  GAAGGGATCTTTGTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATCTTTGTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTTGAC  600

seq1  CATGCAGGCCTTTAATTCAGAGATCCATCTGTCTGTCTCTGCCTACCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCCTTTAATTCAGAGATCCATCTGTCTGTCTCTGCCTACCGAG  650

seq1  TGCTGGGATCAAAAACCCACTGACCAGTCTAACTAAACTCTTAATTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATCAAAAACCCACTGACCAGTCTAACTAAACTCTTAATTCCAT  700

seq1  CACTCTGGGGATGGAGGCAGGAAAACCAGAAGTTCAAGTGGAGTTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGGGATGGAGGCAGGAAAACCAGAAGTTCAAGTGGAGTTTGAAC  750

seq1  TCAGCTATACAGTAGAGTTCAAGACCAGTGTGAACTACATGAGACCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATACAGTAGAGTTCAAGACCAGTGTGAACTACATGAGACCCTGT  800

seq1  TTCAAAAAGCCAAACAAAATTAAGACGATCATACCACAGGTGGTTTGGTT  850
      ||| ||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTC-AAAAGCCAAACAAAATT-AGACGATCATA-CACAGGTGGTTTGGTT  847

seq1  AGTACTTTTATTCTGCAGTTAGAAATAAGCGGTATAGCCACTCGCCTTCC  900
      |||||||||||||||||||||| ||||||||||||||||||||||  | |
seq2  AGTACTTTTATTCTGCAGTTAG-AATAAGCGGTATAGCCACTCGC--TTC  894

seq1  CACAGCGTCCTAGAGGCGTCAGCTTGCACACCTCCTGTAGTCAGTACATG  950
      |||||||| ||||| ||||||||||||||| || ||||||||||||||||
seq2  CACAGCGT-CTAGA-GCGTCAGCTTGCACA-CTACTGTAGTCAGTACATG  941

seq1  GTTTGGCTTCACTCCAGCAACTTCTGCTTGCTCCTTGTTCTAAAAAACAA  1000
        || |||||||| |||| |||||||| |||||  || ||| || |||||
seq2  --TTTGCTTCACT-CAGC-ACTTCTGC-TGCTC--TG-TCT-AAGAACAA  982

seq1  AATAAAACAACAATCACCAAACATAAAAACAGTCTTTCAAACTTCAAACA  1050
         | |||||| |||||  |||||||||  |||| |||||   |||||| 
seq2  ---ATAACAAC-ATCAC--AACATAAAA--AGTC-TTCAA--CTCAAAC-  1020

seq1  TCTGTGGACCACCTACAGCATGCTTAAATA  1080
      ||||||   ||||||| |||||||||||||
seq2  TCTGTG--ACACCTAC-GCATGCTTAAATA  1047