BAC Information

Click to search

BAC

Clone NameB6Ng01-048L04
Chromosome8 (Build37)
Map Location 46,525,177 - 46,723,152
singlet/doubletdoublet
Overlap geneSorbs2
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L04.bB6Ng01-048L04.g
ACCDH873182DH873183
length8631,010
definitionDH873182|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L04, 5' end.DH873183|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,525,177 - 46,526,035)(46,722,130 - 46,723,152)
sequence
gaattcctctcaacatgccagacccagtcaaattggatgcatacacaagc
atgtgtgactttaatatatgaaaatataaagcctgagtagtataactaac
tgaaaggctgtatgcttagcatgtgtgggtgaaacactgggtttgatttt
tagcaacacacacacacacacacacacacacacacaccatgacttgagat
cttgagaagtaactgtatagctataaattatttatgaaactttgttatca
ttcaaagacaggtggatctctatgaattagaagccatcctggcctacaga
gtgagttcctgaccagctaggctacttaatgaggccctgtctcaataact
gcccttgcaaaagttaaggattttcctagcaagttaatttcaatacaaat
atatgtgtgtacttaagcactaattaaggcaaaactagaaatattatttt
tctaaaacattattatatatcattacacgtgtcatacctctgagggtagg
agaatgggaaaaagaaaatggtaattaatgtgtttattaaaattatgtgt
atgataggggagtttaagatatatttaatttaatctttgagagttccata
caatgtatttttcattcatattctctccttttcctcctccttaactcttg
ccagatactccccaaatccttaccccctcctgttttattttgttaataac
tcagtttgtgctggtctcatatatccatgaatgtgcagcctttcccagga
gcatggttgtctctttgacaaagtgatcctattctcctccagaagccagg
ctcttgccacaagctcctcatagagaggggctctaggcctgggactccga
cttgatcatatgc
gaattctttgatcagtgggaagttgagttttcaaatgctagtcacccaag
gagtcatgctatgtttgttggccagataaaatattctcccttgctccggg
atgcatcatctagaacgacagtagatttcttggaaatgatttgcttttag
ttagaaatggaaacacttgactttcaagtcaacactcttcttagttcttt
ctgaccttgaaagttccttcggttgggtgacccaaaggatggcacacctg
cctgcatgctgaagcccctccggatcctgtcttacttgtgggtcttttct
gtactgtggacttgcaggacctctcctcacagactggagtagaagccgag
tgcaataaaacactgaggagtgtgggaaccagtagtccacagacagaaca
tcctctaggagtcaagttgatgatcctaatcttttgcatttccaacagct
atgaaaataaatatccgagttcccaaaggggaggaaaacaagagttctga
ggggcatgttttttattattattattaattatttctttccaaaggaagaa
aaaatttagggtttcaaaatgattatgaaggtaatacaacctttccataa
ataatctacagcttaagtcaaatgactttaatgaatcacaagttccgggg
gaacaataagggggccaccggggtcaaaaggatgatggtttttcaacctc
cccagggttaattttggacttaattatctttgctttaataaataagaagg
gggtatctttcggtcctgataataaatcctaaaattaatttaaaaggcgt
cccaaatcttttatttccggggagggatttttgccaattgaaggaacctg
tatccgttggttcttttatagaattaaagtccgggaaaaaggagccagaa
catatacaatttcaaacccttcttatctaaagactggtttctatgtaagt
cagagactcagatgtacctcaggcctagactggaactaagaaaatctttt
cctacaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46525177_46526035
seq2: B6Ng01-048L04.b_45_907

seq1  GAATTCCTCTCAACATGCCAGACCCAGTCAAATTGGATGCATACACAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCAACATGCCAGACCCAGTCAAATTGGATGCATACACAAGC  50

seq1  ATGTGTGACTTTAATATATGAAAATATAAAGCCTGAGTAGTATAACTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACTTTAATATATGAAAATATAAAGCCTGAGTAGTATAACTAAC  100

seq1  TGAAAGGCTGTATGCTTAGCATGTGTGGGTGAAACACTGGGTTTGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCTGTATGCTTAGCATGTGTGGGTGAAACACTGGGTTTGATTTT  150

seq1  TAGCAACACACACACACACACACACACACACACACACCATGACTTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACACACACACACACACACACACACACACACACCATGACTTGAGAT  200

seq1  CTTGAGAAGTAACTGTATAGCTATAAATTATTTATGAAACTTTGTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGTAACTGTATAGCTATAAATTATTTATGAAACTTTGTTATCA  250

seq1  TTCAAAGACAGGTGGATCTCTATGAATTAGAAGCCATCCTGGCCTACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGACAGGTGGATCTCTATGAATTAGAAGCCATCCTGGCCTACAGA  300

seq1  GTGAGTTCCTGACCAGCTAGGCTACTTAATGAGGCCCTGTCTCAATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCTGACCAGCTAGGCTACTTAATGAGGCCCTGTCTCAATAACT  350

seq1  GCCCTTGCAAAAGTTAAGGATTTTCCTAGCAAGTTAATTTCAATACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCAAAAGTTAAGGATTTTCCTAGCAAGTTAATTTCAATACAAAT  400

seq1  ATATGTGTGTACTTAAGCACTAATTAAGGCAAAACTAGAAATATTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTACTTAAGCACTAATTAAGGCAAAACTAGAAATATTATTTT  450

seq1  TCTAAAACATTATTATATATCATTACACGTGTCATACCTCTGAGGGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACATTATTATATATCATTACACGTGTCATACCTCTGAGGGTAGG  500

seq1  AGAATGGGAAAAAGAAAATGGTAATTAATGTGTTTATTAAAATTATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGAAAAAGAAAATGGTAATTAATGTGTTTATTAAAATTATGTGT  550

seq1  ATGATAGGGGAGTTTAAGATATATTTAA-TTAATCTTTGAGAGTTCCATA  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATAGGGGAGTTTAAGATATATTTAATTTAATCTTTGAGAGTTCCATA  600

seq1  CAATGTA-TTTTCA-TCATATTCTCT-CTTTTCCTCCTCC-TAACTCTTG  645
      ||||||| |||||| ||||||||||| ||||||||||||| |||||||||
seq2  CAATGTATTTTTCATTCATATTCTCTCCTTTTCCTCCTCCTTAACTCTTG  650

seq1  CCAGATACTCCCCAAATCCTTACCCCCTCCTGTTTTATTTTGTTAATAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATACTCCCCAAATCCTTACCCCCTCCTGTTTTATTTTGTTAATAAC  700

seq1  TCAGTTTGTGCTGGTCTCATATATCCATGAGTGTGCAGCCATTCCCAGGA  745
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  TCAGTTTGTGCTGGTCTCATATATCCATGAATGTGCAGCCTTTCCCAGGA  750

seq1  GCATGGTTGTCTCTTAGACAAAGTGACTCT-TTCTCCTCCAGAAGCCA-G  793
      ||||||||||||||| ||||||||||  || ||||||||||||||||| |
seq2  GCATGGTTGTCTCTTTGACAAAGTGATCCTATTCTCCTCCAGAAGCCAGG  800

seq1  CACCTGCCCACAGCTCCTCAATAGAGGAGGGGTCTCACAGGCTGGGACTC  843
      | | ||||   |||||||| ||||| |||||| |||   | |||||||||
seq2  CTCTTGCCACAAGCTCCTC-ATAGA-GAGGGG-CTCTAGGCCTGGGACTC  847

seq1  TGACTTGATCATATGC  859
       |||||||||||||||
seq2  CGACTTGATCATATGC  863

seq1: chr8_46722130_46723152
seq2: B6Ng01-048L04.g_67_1076 (reverse)

seq1  TACCTGTTTAGGGAAAAGGATTTTCTTAGTTCCATGTCTTAGGCACTGAG  50
      ||||||  ||||  ||| |||||||||||||||| ||| ||||| |||| 
seq2  TACCTG--TAGG--AAAAGATTTTCTTAGTTCCA-GTC-TAGGC-CTGA-  42

seq1  GGTACATCCTGAAGTCTCTGACTTTACATAGAAACATGTCTTTTCAGATA  100
      ||||||| ||| |||||||||| ||||||||||||  ||||||  |||||
seq2  GGTACAT-CTG-AGTCTCTGAC-TTACATAGAAACCAGTCTTT--AGATA  87

seq1  AGATGTGGTCTGAAATCTGATTATGTTCTTGACTTCCTTTCTACCAGAGC  150
      ||| | ||| |||||| ||  |||||||| |   |||||| | || || |
seq2  AGAAG-GGTTTGAAAT-TGTATATGTTCTGG--CTCCTTTTTCCCGGA-C  132

seq1  TTTAATTCTATAAAACGAACCTAACTGATTACAGTTTCCTCTCAATTATG  200
      ||||||||||||||| ||||| ||| || ||||| ||||| ||||||  |
seq2  TTTAATTCTATAAAA-GAACC-AACGGA-TACAGGTTCCT-TCAATT-GG  177

seq1  CAAAAATTCCCTTCCCCTGTATATAAAGTATTTGGACTGCATTTTAAATT  250
      |||||| |||||  ||| | | |||||  ||||||   || |||||||||
seq2  CAAAAA-TCCCT--CCCCGGAAATAAAAGATTTGGGACGCCTTTTAAATT  224

seq1  AATTTTTAGATTTATTATCAGGACAG-AAGATACCACCTTCTTATTTAAT  299
      ||||||  |||||||||||||||| | |||||||| ||||||||||| ||
seq2  AATTTTAGGATTTATTATCAGGACCGAAAGATACCCCCTTCTTATTT-AT  273

seq1  AAAAGCAAATGATAATCTAAGT-CATAAATAACCTGGTGTAGTTTGAAAA  348
       |||||||| |||||| ||||| || || |||||  | | || |||||||
seq2  TAAAGCAAA-GATAAT-TAAGTCCAAAATTAACCCTGGGGAGGTTGAAAA  321

seq1  ACCATCATCCTTTTGA-CCCAGTGACCCAC-TAGTGCTCCACAGTAAC-T  395
      |||||||||||||||| ||| ||| ||| | || || ||| | | ||| |
seq2  ACCATCATCCTTTTGACCCCGGTGGCCCCCTTATTGTTCCCCCGGAACTT  371

seq1  GTGATCCATTAAAGTCATTTGACTTAAGCTGTAGATTA-TTATGG-AATG  443
      ||||| |||||||||||||||||||||||||||||||| |||||| || |
seq2  GTGATTCATTAAAGTCATTTGACTTAAGCTGTAGATTATTTATGGAAAGG  421

seq1  TTGTATTA-CTTCATAATCA-TTTGAAACCCTAAATTTTTTCTTCCTTT-  490
      |||||||| ||||||||||| |||||||||||||||||||||||||||| 
seq2  TTGTATTACCTTCATAATCATTTTGAAACCCTAAATTTTTTCTTCCTTTG  471

seq1  GAAAGAAATAA-TAATAATAATAATAAAAAACATG-CCCTCAGAACTCTT  538
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GAAAGAAATAATTAATAATAATAATAAAAAACATGCCCCTCAGAACTCTT  521

seq1  G-TTTCCTCCC--TTTGGAACTCGGATATTTATTTTCATAGCTGTTGGAA  585
      | |||||||||  || ||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCCCCTTTGGGAACTCGGATATTTATTTTCATAGCTGTTGGAA  571

seq1  ATGC-AAAGATTAGGATCATCAACTTGACTCCTAGAGGATGTTCTGTCTG  634
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGATTAGGATCATCAACTTGACTCCTAGAGGATGTTCTGTCTG  621

seq1  TGGACTACTGGTTCCCACACTCCTCAGTGTTTTATTGCACTCGGCTTCTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTACTGGTTCCCACACTCCTCAGTGTTTTATTGCACTCGGCTTCTA  671

seq1  CTCCAGTCTGTGAGGAGAGGTCCTGCAAGTCCACAGTACAGAAAAGACCC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCTGTGAGGAGAGGTCCTGCAAGTCCACAGTACAGAAAAGACCC  721

seq1  ACAAGTAAGACAGGATCCGGAGGGGCTTCAGCATGCAGGCAGGTGTGCCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAGACAGGATCCGGAGGGGCTTCAGCATGCAGGCAGGTGTGCCA  771

seq1  TCCTTTGGGTCACCCAACCGAAGGAACTTTCAAGGTCAGAAAGAACTAAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGTCACCCAACCGAAGGAACTTTCAAGGTCAGAAAGAACTAAG  821

seq1  AAGAGTGTTGACTTGAAAGTCAAGTGTTTCCATTTCTAACTAAAAGCAAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTGACTTGAAAGTCAAGTGTTTCCATTTCTAACTAAAAGCAAA  871

seq1  TCATTTCCAAGAAATCTACTGTCGTTCTAGATGATGCATCCCGGAGCAAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCAAGAAATCTACTGTCGTTCTAGATGATGCATCCCGGAGCAAG  921

seq1  GGAGAATATTTTATCTGGCCAACAAACATAGCATGACTCCTTGGGTGACT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATATTTTATCTGGCCAACAAACATAGCATGACTCCTTGGGTGACT  971

seq1  AGCATTTGAAAACTCAACTTCCCACTGATCAAAGAATTC  1023
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGAAAACTCAACTTCCCACTGATCAAAGAATTC  1010