BAC Information

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BAC

Clone NameB6Ng01-048L08
Chromosome8 (Build37)10 (Build37)
Map Location 18,911,997 - 18,913,044104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486
Downstream geneXkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L08.bB6Ng01-048L08.g
ACCDH873190DH873191
length1,034702
definitionDH873190|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L08, 5' end.DH873191|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,911,997 - 18,913,044)(104,053,903 - 104,054,363)
sequence
gaattctttatctcaaggcaagcactttgctgacagttctctccctagcc
atggacccaggcctcattagttaagagcagttgtgaaggccagagacacc
atgcacagatgtccgagttctgcttttcgtgaagcatctggcagagggca
cagatgaagataaatttcactcagccagggaaaccttttgcctgtgacct
gtatacaggggtctaagaacgcagcaatggctggatcctgagcagtggcc
atgcactgagtgtttggggcacagaaaccagtaaaatataagccacttct
ttcagaaatcagctgcatacaggggaagaaagagtgacggacagggtgct
ctctgtggtagtgtttccgcaaattcattcttgcttggttcttgaaactg
aaaattcactgagggtttttaacatggtgacagcatactaggtgcttacg
taatctcaaaactatgcccctgcattggcatcaggcctatcatggggagc
cagagccagaggaacctcaccagaggtggaagaactaacagggtgtgttt
tgacttcactccactcttcttggagccatgctcaggggtgtttttatttc
ccatactgtttttcttagtattgtggagttttgttttctctcttgtccca
aatgagaacggcatcttttggcgaaatggcaaagtagaagtgacaagata
ccttgaacattaagaaagttatcacaaagatggcgtctgtgatgggtctg
tcccctcggcatcttctctaggtgattgccacctgtcatccagatgcaga
tgtgtcctagaattgcttttctggttggttctaggacttacatggtgatt
gacaaggagaaaaggggtttatatggtgagtccctcaagcaaagaaccca
agtgtccttggtgaacgtccattgtcctggcagatttcttattaaagggc
tatttgtctgtgagaacatctagactgactcactcgtactattgtgaaga
ccttatactagatctgacgtgatgcacgtgtgtc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatatggtatatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcgcacaatatgtactcattgataagtggatattagcccaaaacc
taggatacccaagatataagatataatttcctaaacacatgaaactcaag
aaaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18911997_18913044
seq2: B6Ng01-048L08.b_43_1076

seq1  GAATTCTTTATCTCAAGGCAAGCACTTTGCTGACAGTTCTCTCCCTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCTCAAGGCAAGCACTTTGCTGACAGTTCTCTCCCTAGCC  50

seq1  ATGGACCCAGGCCTCATTAGTTAAGAGCAGTTGTGAAGGCCAGAGACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCCAGGCCTCATTAGTTAAGAGCAGTTGTGAAGGCCAGAGACACC  100

seq1  ATGCACAGATGTCCGAGTTCTGCTTTTCGTGAAGCATCTGGCAGAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGATGTCCGAGTTCTGCTTTTCGTGAAGCATCTGGCAGAGGGCA  150

seq1  CAGATGAAGATAAATTTCACTCAGCCAGGGAAACCTTTTGCCTGTGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGATAAATTTCACTCAGCCAGGGAAACCTTTTGCCTGTGACCT  200

seq1  GTATACAGGGGTCTAAGAACGCAGCAATGGCTGGATCCTGAGCAGTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAGGGGTCTAAGAACGCAGCAATGGCTGGATCCTGAGCAGTGGCC  250

seq1  ATGCACTGAGTGTTTGGGGCACAGAAACCAGTAAAATATAAGCCACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGAGTGTTTGGGGCACAGAAACCAGTAAAATATAAGCCACTTCT  300

seq1  TTCAGAAATCAGCTGCATACAGGGGAAGAAAGAGTGACGGACAGGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATCAGCTGCATACAGGGGAAGAAAGAGTGACGGACAGGGTGCT  350

seq1  CTCTGTGGTAGTGTTTCCGCAAATTCATTCTTGCTTGGTTCTTGAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGTAGTGTTTCCGCAAATTCATTCTTGCTTGGTTCTTGAAACTG  400

seq1  AAAATTCACTGAGGGTTTTTAACATGGTGACAGCATACTAGGTGCTTACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCACTGAGGGTTTTTAACATGGTGACAGCATACTAGGTGCTTACG  450

seq1  TAATCTCAAAACTATGCCCCTGCATTGGCATCAGGCCTATCATGGGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAAAACTATGCCCCTGCATTGGCATCAGGCCTATCATGGGGAGC  500

seq1  CAGAGCCAGAGGAACCTCACCAGAGGTGGAAGAACTAACAGGGTGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGAGGAACCTCACCAGAGGTGGAAGAACTAACAGGGTGTGTTT  550

seq1  TGACTTCACTCCACTCTTCTTGGAGCCATGCTCAGGGGTGTTTTTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCACTCCACTCTTCTTGGAGCCATGCTCAGGGGTGTTTTTATTTC  600

seq1  CCATACTGTTTTTCTTAGTATTGTGGAGTTTTGTTTTCTCTCTTGTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGTTTTTCTTAGTATTGTGGAGTTTTGTTTTCTCTCTTGTCCCA  650

seq1  AATGAGAACGGCATCTTTT-GCGAAATGGCAAAGTAGAGGTGACAAGATA  699
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  AATGAGAACGGCATCTTTTGGCGAAATGGCAAAGTAGAAGTGACAAGATA  700

seq1  CCTTGAACATTAAGAA--GTATCACAAAGATGGCGTCTGTGATGGTTCTG  747
      ||||||||||||||||   |||||||||||||||||||||||||| ||||
seq2  CCTTGAACATTAAGAAAGTTATCACAAAGATGGCGTCTGTGATGGGTCTG  750

seq1  T-CACTCGGCATC-TCTCTAGGTGATTGCCACCTGTCATCCAGATGCAGA  795
      | | ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCGGCATCTTCTCTAGGTGATTGCCACCTGTCATCCAGATGCAGA  800

seq1  TGTGTCCTAGAATTGCTTTTCTGGTTTGTTCTAGGACTTACATGGTGATT  845
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTGTCCTAGAATTGCTTTTCTGGTTGGTTCTAGGACTTACATGGTGATT  850

seq1  GACAAGGAAGAAAGGGGTTTATATGGTGAGTCCC-CAAGCAAAGGAAACC  894
      ||||||||  |||||||||||||||||||||||| |||||||||   | |
seq2  GACAAGGAGAAAAGGGGTTTATATGGTGAGTCCCTCAAGCAAAG---AAC  897

seq1  CCAAGTGTCCTTGGTGAACGTCCA-TGCCTTGGGCAGAATTTTCTTATTA  943
      |||||||||||||||||||||||| || | | ||||||  ||||||||||
seq2  CCAAGTGTCCTTGGTGAACGTCCATTGTCCT-GGCAGA--TTTCTTATTA  944

seq1  AAAGGTGCTATTTGTCTGTTGATAGACATCTAGACTGACTCAACTCCTTA  993
      ||  | |||||||||||| ||| | |||||||||||||||| ||| | ||
seq2  AA--GGGCTATTTGTCTG-TGAGA-ACATCTAGACTGACTC-ACT-CGTA  988

seq1  CTATTGTGGAAAGAACACTTATTACTAAAGTACTAGACGTGTATGCACGT  1043
      ||||||||  ||||   |||| ||||  ||  || |||||| ||||||||
seq2  CTATTGTG--AAGA--CCTTA-TACT--AGATCT-GACGTG-ATGCACGT  1029

seq1  GTGTC  1048
      |||||
seq2  GTGTC  1034

seq1: chr10_104053903_104054363
seq2: B6Ng01-048L08.g_66_536 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||| ||||| ||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATATACCATATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACGGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCTCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471