BAC Information

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BAC

Clone NameB6Ng01-048N21
Chromosome8 (Build37)
Map Location 68,639,349 - 68,835,347
singlet/doubletdoublet
Overlap geneMarch1
Upstream geneLOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048N21.bB6Ng01-048N21.g
ACCDH873300DH873301
length1,216942
definitionDH873300|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N21, 5' end.DH873301|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,639,349 - 68,640,506)(68,834,761 - 68,835,347)
sequence
gaattccagtgacaggattcagatgtcaggcttgtgtatttaacaactga
gccatttcacaaaccacagaaatagttcttggaagcacattatctaaaca
gcaaagtcaaatctcataaaacttaaattgaaaaaatattcttcaaattc
ttagacaagagctacgtccaattctcaaattcaaggatagggggcactcc
ctattacagttatgtagtgaaaatagagaacatttagataagtcagaact
atactttaatgagaaagacacaaaatgggtaaatttaaagaaggaactaa
ttgataagatgagacaaaaacagctgcaggtaactgtgttttcctgatga
aacagggctctgcttttatgtttaaactgatgagcctgagataaagtgag
gggaggctaggctgtggcccaggttgcacaggtcaactacccatacagtg
tttaattcaagcagcatcgttgtcacacagtgccctttgaatagactgca
gtatgcatggtgccatccagagctgagcagtcccttgtgtaggggcagaa
aactctagagtaatgatgattttaatttctatgtaattaaggcacatcct
cattctttaaaggtcttctcaggtctacctttccttataatagatactac
tttaaatgtcctttaaaattagcatggtattccatgttctcctcgggcat
cttttatcatgctatcttataagggtaggtatacttgtctattttgctcc
ttgtgctaagccaggcatcttctatttctgtatcatgattctaagaacag
tctttgtcatagagaaagtgctcagtaaatgttttgtaaattaaaaataa
attattctccatagatacacccaattgccttgtctcttttttctcttaat
tttaatttgtgtcatttatccactcagatgcgctatctccatttattaaa
ttaatatctgcttgagagcatattaaaaattaaactagtaaatcccattt
ctgtgatcattatatacgtgtcatgctccatctcatataactgtcaatgg
taatcggattaaaggatgcttaggtaccttcccattctgatatatcagaa
gaagcttacagtatgccttagggtaatataactggtaattggcctctctc
tgacggcgacattcttacgactcgtgtgctcaaagcttaaggagatggaa
acatgagtgctttagg
gaattcaaatgaccttctcttgtttaccaaaataagatttccaaattctt
tcttacaaccaccacattttttttctccagtcacttaaaaaaaaaaaaca
aacctctttcatgttatattttaaaggacatcatcaaatattatatttaa
tgggctggagccatgggtatcttcatgtgaaaataataattatatatatt
taagtgaatgccaactgatgttaggatgcatgtgaacattgtaaaatctt
ttaattatgctaaatattttcaattattttgtggtaaaaacatcccaacc
tattgtgctatatctttaattagaaagtacattataatcattatccattg
tcactttactgtgcacactatactttttgccctaaactgcatttctgttt
tcactgatccagcttctgtcacctcttcaccacccatcctttcaccccct
tccccaatcttcctgttaatcgccatttctttggaaggttctacaggatc
agcattttaagagtccacttgtaagtgggaccatgtggtatttgcttttc
tgtggctggcttatttcaatttacataaccacttccatggttatttaccc
ttctgggtatcacgctggagaaaagcccaacagaggcctgtgggacagat
tgatattttaggctgcagatacttaactactgaagtccttgcatagttaa
atagccaggttctcttactagtttggtttgatatttttagggtcaactac
tcaatcacagctttgttttctaatttctaaatcataagtctatctaaaaa
ggttactgtcaggagccgaggagatggcccagtagttaaaaatgttttct
gtgcaagcacagagtctgaactcacatcttgagacccagtaaatgccagt
gagtgtgctgcctgtctgtctgtaatttagttgagaggtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_68639349_68640506
seq2: B6Ng01-048N21.b_44_1259

seq1  GAATTCCAGTGACAGGATTCAGATGTCAGGCTTGTGTATTTAACAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGACAGGATTCAGATGTCAGGCTTGTGTATTTAACAACTGA  50

seq1  GCCATTTCACAAACCACAGAAATAGTTCTTGGAAGCACATTATCTAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCACAAACCACAGAAATAGTTCTTGGAAGCACATTATCTAAACA  100

seq1  GCAAAGTCAAATCTCATAAAACTTAAATTGAAAAAATATTCTTCAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCAAATCTCATAAAACTTAAATTGAAAAAATATTCTTCAAATTC  150

seq1  TTAGACAAGAGCTACGTCCAATTCTCAAATTCAAGGATAGGGGGCACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAGAGCTACGTCCAATTCTCAAATTCAAGGATAGGGGGCACTCC  200

seq1  CTATTACAGTTATGTAGTGAAAATAGAGAACATTTAGATAAGTCAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAGTTATGTAGTGAAAATAGAGAACATTTAGATAAGTCAGAACT  250

seq1  ATACTTTAATGAGAAAGACACAAAATGGGTAAATTTAAAGAAGGAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAATGAGAAAGACACAAAATGGGTAAATTTAAAGAAGGAACTAA  300

seq1  TTGATAAGATGAGACAAAAACAGCTGCAGGTAACTGTGTTTTCCTGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGATGAGACAAAAACAGCTGCAGGTAACTGTGTTTTCCTGATGA  350

seq1  AACAGGGCTCTGCTTTTATGTTTAAACTGATGAGCCTGAGATAAAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCTCTGCTTTTATGTTTAAACTGATGAGCCTGAGATAAAGTGAG  400

seq1  GGGAGGCTAGGCTGTGGCCCAGGTTGCACAGGTCAACTACCCATACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTAGGCTGTGGCCCAGGTTGCACAGGTCAACTACCCATACAGTG  450

seq1  TTTAATTCAAGCAGCATCGTTGTCACACAGTGCCCTTTGAATAGACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCAAGCAGCATCGTTGTCACACAGTGCCCTTTGAATAGACTGCA  500

seq1  GTATGCATGGTGCCATCCAGAGCTGAGCAGTCCCTTGTGTAGGGGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGGTGCCATCCAGAGCTGAGCAGTCCCTTGTGTAGGGGCAGAA  550

seq1  AACTCTAGAGTAATGATGATTTTAATTTCTATGTAATTAAGGCACATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGAGTAATGATGATTTTAATTTCTATGTAATTAAGGCACATCCT  600

seq1  CATTCTTTAAAGGTCTTCTCAGGTCTACCTTTCCTTATAATAGATACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAAAGGTCTTCTCAGGTCTACCTTTCCTTATAATAGATACTAC  650

seq1  TTTAAATGTCCTTTAAAATTAGCATGGTATTCCATGTTCTCCTCGGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTCCTTTAAAATTAGCATGGTATTCCATGTTCTCCTCGGGCAT  700

seq1  CTTTTATCATGCTATCTTATAAGGGTAGGTATACTTGTCTATTTTGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCATGCTATCTTATAAGGGTAGGTATACTTGTCTATTTTGCTCC  750

seq1  TTGTGCTAAGCCAGGCATCTTCTATTTCTGTATCATGATTCTAAGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTAAGCCAGGCATCTTCTATTTCTGTATCATGATTCTAAGAACAG  800

seq1  TCTTTGTCATAGAGAAAGTGCTCAGTAAATGTTTTGTAAATTAAAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCATAGAGAAAGTGCTCAGTAAATGTTTTGTAAATTAAAAATAA  850

seq1  ATTATTCTCCATAAGATACACCCAATTGCCTTGTCTCTTTTTTCTCTTAA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCCAT-AGATACACCCAATTGCCTTGTCTCTTTTTTCTCTTAA  899

seq1  TTTTAATTTGTTGTCAATTTAATCCACTCAGAATGCGCTATTCTCCCATT  950
      |||||||||| |||||  || |||||||||| |||||||| ||| |||||
seq2  TTTTAATTTG-TGTCA--TTTATCCACTCAG-ATGCGCTA-TCT-CCATT  943

seq1  TATTAAATTAAATATCTGCTTGAAGAGGCATATTAAAAATTAAACTTAGT  1000
      ||||||||| |||||||||||| ||| |||||||||||||||||| ||| 
seq2  TATTAAATT-AATATCTGCTTG-AGA-GCATATTAAAAATTAAAC-TAG-  988

seq1  TAAATCCCAATTTCCTGTGATCATTATATACGTTGTTCATTGCTCCATCT  1050
      |||||||||  || |||||||||||||||||||   ||| ||||||||||
seq2  TAAATCCCA--TTTCTGTGATCATTATATACGT--GTCA-TGCTCCATCT  1033

seq1  CATATTAACTTGGTTCAATGGGTAAATCGTAATTAACAGGAATGCTTAAT  1100
      |||| |||||    |||||||   |||||  ||||| ||| |||||||  
seq2  CATA-TAACT---GTCAATGG--TAATCG-GATTAA-AGG-ATGCTTA--  1072

seq1  GATCACTTTCCCATTCTGATATATCAGTAATGATGCTTACAGTTTAAAGT  1150
      | | || ||||||||||||||||||||  | || |||||||||      |
seq2  GGT-ACCTTCCCATTCTGATATATCAG--AAGAAGCTTACAGT-----AT  1114

seq1  GCTTTAGG------------------------------------------  1158
      || |||||                                          
seq2  GCCTTAGGGTAATATAACTGGTAATTGGCCTCTCTCTGACGGCGACATTC  1164

seq1  --------------------------------------------------  1158
                                                        
seq2  TTACGACTCGTGTGCTCAAAGCTTAAGGAGATGGAAACATGAGTGCTTTA  1214

seq1  --  1158
        
seq2  GG  1216

seq1: chr8_68834761_68835347
seq2: B6Ng01-048N21.g_69_655 (reverse)

seq1  TGGAAGTGGTTATGTAAATTGAAATAAGCCAGCCACAGAAAAGCAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGTTATGTAAATTGAAATAAGCCAGCCACAGAAAAGCAAATAC  50

seq1  CACATGGTCCCACTTACAAGTGGACTCTTAAAATGCTGATCCTGTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTCCCACTTACAAGTGGACTCTTAAAATGCTGATCCTGTAGAAC  100

seq1  CTTCCAAAGAAATGGCGATTAACAGGAAGATTGGGGAAGGGGGTGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGAAATGGCGATTAACAGGAAGATTGGGGAAGGGGGTGAAAGG  150

seq1  ATGGGTGGTGAAGAGGTGACAGAAGCTGGATCAGTGAAAACAGAAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGTGAAGAGGTGACAGAAGCTGGATCAGTGAAAACAGAAATGCA  200

seq1  GTTTAGGGCAAAAAGTATAGTGTGCACAGTAAAGTGACAATGGATAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGCAAAAAGTATAGTGTGCACAGTAAAGTGACAATGGATAATGA  250

seq1  TTATAATGTACTTTCTAATTAAAGATATAGCACAATAGGTTGGGATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTACTTTCTAATTAAAGATATAGCACAATAGGTTGGGATGTTT  300

seq1  TTACCACAAAATAATTGAAAATATTTAGCATAATTAAAAGATTTTACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAAAATAATTGAAAATATTTAGCATAATTAAAAGATTTTACAAT  350

seq1  GTTCACATGCATCCTAACATCAGTTGGCATTCACTTAAATATATATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATGCATCCTAACATCAGTTGGCATTCACTTAAATATATATAATT  400

seq1  ATTATTTTCACATGAAGATACCCATGGCTCCAGCCCATTAAATATAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCACATGAAGATACCCATGGCTCCAGCCCATTAAATATAATAT  450

seq1  TTGATGATGTCCTTTAAAATATAACATGAAAGAGGTTTGTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATGTCCTTTAAAATATAACATGAAAGAGGTTTGTTTTTTTTTTT  500

seq1  TAAGTGACTGGAGAAAAAAAATGTGGTGGTTGTAAGAAAGAATTTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACTGGAGAAAAAAAATGTGGTGGTTGTAAGAAAGAATTTGGAAA  550

seq1  TCTTATTTTGGTAAACAAGAGAAGGTCATTTGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTGGTAAACAAGAGAAGGTCATTTGAATTC  587