BAC Information

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BAC

Clone NameB6Ng01-049F01
Chromosome8 (Build37)
Map Location 101,648,747 - 101,801,163
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049F01.bB6Ng01-049F01.g
ACCDH873616DH873617
length1,0231,028
definitionDH873616|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F01, 5' end.DH873617|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,800,092 - 101,801,163)(101,648,747 - 101,649,796)
sequence
gaattctatttttatttattttttctgctcatcaaaactgagtcattgca
ctgtagatgcctggaatgacatggttgcttggagaaacttttatgaactc
ctagccgtaatgtaccactcctccatcagcaccaccataaaaatgaagta
cgcaagcaagtggaatcatctccatctttgcacagcttttaaattcagaa
gcacaggcagggagtaagaaattctgctttctttagatcttgtttggtct
aatacttacccaatttgtctttttatttagattttgttaagtcagattag
aaaaatagaattattagcacgttctgtacacagagcatgcttaattttat
acaaatggggaccaaggaaactgtaattgccccatgctactttctctgtc
ttaatcccaatgttgtatgtgttgattgtaaatatatcagaagatgccct
ttttgttcatgtaagttatttgcctgatatatttgctgagaaaattctag
atacatacacataggacatggcattttcaatctataaaaatttataaaaa
gttattcactacagaatatcatgtatacatgtacctctgtgtatatatgt
gtacatatattctatcatttttgctgctaaaggaatagaattaagtgata
tttacacacacatacacgtatatttatatgcacacatatgcatatcgtac
atatgcacataaagatacataaagattaatctttaatatttaagaagtgt
tcctgaattcacagagaatttgttgaagttaccagtacagatttgattct
agattcccttctttattcatcattgattgtgaaatattgacaggtgaaat
tggcagccctatcatagctatggtggacattatgactcatgctcaaatac
aaagtaagatgctgaaaaatcatgtacatatgtgcttgtgtgtaaatatc
taatatgcattctactactgtacattctgtcgatgatttgcctgggatct
gtttgtgatgctatctctctggt
gaattcactctgtagatcaggacggcattggactcagaaatcttcctgcc
tcttcctcccaagtgctgggattaaaaggcatgtgccaccactgcctggc
aaaattgattttcttattgatcactttttttctaataatacttaattgtg
cacatgggaaaaatccatgttaggtaaatacaacatctacagtattgttc
catctcagtgtgttttgtcatttgttgttatgaaacttttccttgaatta
cagtaatatttctcctctgttgactcttgaccttttttgtttgtttgttt
gtttgtttgtctgaattggtatacgtcttgtattccttttaacctttatg
tgtacctattacttaacatccatatatgaatagaaatgaggcttacatat
tgccttctttataaaatctgccctgataattggtctagtagacgaattta
tagcagtctatttatagcaatgtgaaggttttccatgacttcagggtaga
gatgtttgaatttcacattgtacttcaaatttctaagacctttcccatca
ggtttttcataataaccccacagttgtacagctgtttcctctacatcggg
aacatttccttccctggaaagagggggcagtacagtaaaatcaggaaagt
gagtcagacttagggaggctctgtgcatttctaaacatcccagatcttcc
tcaaggttgcacaagcagtaacacttgctaaagaaattccctcagttcag
ctgctgcctgccagtcagcattcaggttgtttcagtgaagtaactaaaga
agtcaacattctaccctctggtgggcttttagttatgatgttgccttaag
ccatccacgttcctatcagcataccacatccttcttctgcagtggatctc
aatatagtcattgtttggtagttgtgtgttttgtcatctcagttttctgg
agatgacacttttctcttcttccaggatctgtcataaacatctgtatcat
tctctctgatcaatgttattatttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101800092_101801163
seq2: B6Ng01-049F01.b_42_1064 (reverse)

seq1  ACCAGAGAAGATAGCATCCAACAAAAACCAGATACTCACAGCCCAAAATC  50
      ||||||| ||||||||||  |||||   ||||   || ||| |  |||||
seq2  ACCAGAG-AGATAGCATC--ACAAA---CAGA---TCCCAGGC--AAATC  39

seq1  AATACGAACAGGAATGTACAAAGGTAAGTTAAGGAATGCATTAATATAGA  100
      |   || ||| |||||||||   |||       ||||||||  || ||||
seq2  A--TCG-ACA-GAATGTACAGTAGTA-------GAATGCAT--AT-TAGA  75

seq1  TAATTTTACCACCACAAAAGCAACCAATAATGGTACATGAATTTTTTTCA  150
      ||  ||||    |||| |||||    |||   ||||||||   |||||| 
seq2  TA--TTTA----CACACAAGCA---CATA--TGTACATGA---TTTTTC-  110

seq1  AGCATTCCTTTACTTTGTATTTGAGCATTGGAGTCATTAATTGTCCACCA  200
      |||||    |||||||||||||||||||  |||||||  | |||||||||
seq2  AGCAT---CTTACTTTGTATTTGAGCAT--GAGTCAT--AATGTCCACCA  153

seq1  TAGCTATGAATAGGGCTGCCAATTTCACCTGTCAATATTTCACAATCAAA  250
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TAGCTATG-ATAGGGCTGCCAATTTCACCTGTCAATATTTCACAATC-AA  201

seq1  TGATGAATAAAGAAGGGAATCTAGAATCAAATCTGTACTGGTAACTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATAAAGAAGGGAATCTAGAATCAAATCTGTACTGGTAACTTCAA  251

seq1  CAAATTCTCTGTGAATTCAGGAACACTTCTTAAATATTAAAGATTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTCTGTGAATTCAGGAACACTTCTTAAATATTAAAGATTAATCT  301

seq1  TTATGTATCTTTATGTGCATATGTACGATATGCATATGTGTGCATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATCTTTATGTGCATATGTACGATATGCATATGTGTGCATATAAA  351

seq1  TATACGTGTATGTGTGTGTAAATATCACTTAATTCTATTCCTTTAGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTGTATGTGTGTGTAAATATCACTTAATTCTATTCCTTTAGCAGC  401

seq1  AAAAATGATAGAATATATGTACACATATATACACAGAGGTACATGTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATAGAATATATGTACACATATATACACAGAGGTACATGTATAC  451

seq1  ATGATATTCTGTAGTGAATAACTTTTTATAAATTTTTATAGATTGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTCTGTAGTGAATAACTTTTTATAAATTTTTATAGATTGAAAAT  501

seq1  GCCATGTCCTATGTGTATGTATCTAGAATTTTCTCAGCAAATATATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCCTATGTGTATGTATCTAGAATTTTCTCAGCAAATATATCAGG  551

seq1  CAAATAACTTACATGAACAAAAAGGGCATCTTCTGATATATTTACAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACTTACATGAACAAAAAGGGCATCTTCTGATATATTTACAATCA  601

seq1  ACACATACAACATTGGGATTAAGACAGAGAAAGTAGCATGGGGCAATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAACATTGGGATTAAGACAGAGAAAGTAGCATGGGGCAATTAC  651

seq1  AGTTTCCTTGGTCCCCATTTGTATAAAATTAAGCATGCTCTGTGTACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTGGTCCCCATTTGTATAAAATTAAGCATGCTCTGTGTACAGA  701

seq1  ACGTGCTAATAATTCTATTTTTCTAATCTGACTTAACAAAATCTAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCTAATAATTCTATTTTTCTAATCTGACTTAACAAAATCTAAATAA  751

seq1  AAAGACAAATTGGGTAAGTATTAGACCAAACAAGATCTAAAGAAAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAATTGGGTAAGTATTAGACCAAACAAGATCTAAAGAAAGCAGA  801

seq1  ATTTCTTACTCCCTGCCTGTGCTTCTGAATTTAAAAGCTGTGCAAAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTACTCCCTGCCTGTGCTTCTGAATTTAAAAGCTGTGCAAAGATG  851

seq1  GAGATGATTCCACTTGCTTGCGTACTTCATTTTTATGGTGGTGCTGATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATTCCACTTGCTTGCGTACTTCATTTTTATGGTGGTGCTGATGG  901

seq1  AGGAGTGGTACATTACGGCTAGGAGTTCATAAAAGTTTCTCCAAGCAACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGTACATTACGGCTAGGAGTTCATAAAAGTTTCTCCAAGCAACC  951

seq1  ATGTCATTCCAGGCATCTACAGTGCAATGACTCAGTTTTGATGAGCAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCCAGGCATCTACAGTGCAATGACTCAGTTTTGATGAGCAGAA  1001

seq1  AAAATAAATAAAAATAGAATTC  1072
      ||||||||||||||||||||||
seq2  AAAATAAATAAAAATAGAATTC  1023

seq1: chr8_101648747_101649796
seq2: B6Ng01-049F01.g_68_1095

seq1  GAATTCACTCTGTAGATCAGGACGGCATTGGACTCAGAAATCTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCAGGACGGCATTGGACTCAGAAATCTTCCTGCC  50

seq1  TCTTCCTCCCAAGTGCTGGGATTAAAAGGCATGTGCCACCACTGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCCAAGTGCTGGGATTAAAAGGCATGTGCCACCACTGCCTGGC  100

seq1  AAAATTGATTTTCTTATTGATCACTTTTTTTCTAATAATACTTAATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGATTTTCTTATTGATCACTTTTTTTCTAATAATACTTAATTGTG  150

seq1  CACATGGGAAAAATCCATGTTAGGTAAATACAACATCTACAGTATTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAAAAATCCATGTTAGGTAAATACAACATCTACAGTATTGTTC  200

seq1  CATCTCAGTGTGTTTTGTCATTTGTTGTTATGAAACTTTTCCTTGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGTGTTTTGTCATTTGTTGTTATGAAACTTTTCCTTGAATTA  250

seq1  CAGTAATATTTCTCCTCTGTTGACTCTTGACCTTTTTTGTTTGTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATATTTCTCCTCTGTTGACTCTTGACCTTTTTTGTTTGTTTGTTT  300

seq1  GTTTGTTTGTCTGAATTGGTATACGTCTTGTATTCCTTTTAACCTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTCTGAATTGGTATACGTCTTGTATTCCTTTTAACCTTTATG  350

seq1  TGTACCTATTACTTAACATCCATATATGAATAGAAATGAGGCTTACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTATTACTTAACATCCATATATGAATAGAAATGAGGCTTACATAT  400

seq1  TGCCTTCTTTATAAAATCTGCCCTGATAATTGGTCTAGTAGACGAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTTATAAAATCTGCCCTGATAATTGGTCTAGTAGACGAATTTA  450

seq1  TAGCAGTCTATTTATAGCAATGTGAAGGTTTTCCATGACTTCAGGGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCTATTTATAGCAATGTGAAGGTTTTCCATGACTTCAGGGTAGA  500

seq1  GATGTTTGAATTTCACATTGTACTTCAAATTTCTAAGACCTTTCCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGAATTTCACATTGTACTTCAAATTTCTAAGACCTTTCCCATCA  550

seq1  GGTTTTTCATAATAACCCCACAGTTGTACAGCTGTTTCCTCTACATC-GG  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTTTTTCATAATAACCCCACAGTTGTACAGCTGTTTCCTCTACATCGGG  600

seq1  AACA-TTCCTT-CCTGGAAAGAGGGGGCAGTACAGTAAAATCAGGAAAGT  647
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCTTCCCTGGAAAGAGGGGGCAGTACAGTAAAATCAGGAAAGT  650

seq1  GAGTCAGACTTA-GGAAGCTCTGTGCA-TTCTAAACATCCCAGATCTTCC  695
      |||||||||||| ||| |||||||||| ||||||||||||||||||||||
seq2  GAGTCAGACTTAGGGAGGCTCTGTGCATTTCTAAACATCCCAGATCTTCC  700

seq1  TCAAGGTTGCACAAGCAGTAACACTTGCTAAAGAGATTCCCTCAGTTCAG  745
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAAGGTTGCACAAGCAGTAACACTTGCTAAAGAAATTCCCTCAGTTCAG  750

seq1  CTGCTGCCTGCCAGTCAGGCATTCAGGGTGTTTCAGTGAAGTAACCTAAA  795
      ||||||||||||||||| ||||||||| |||||||||||||||| |||||
seq2  CTGCTGCCTGCCAGTCA-GCATTCAGGTTGTTTCAGTGAAGTAA-CTAAA  798

seq1  G-AGTCAACATTC-AACCTCTGGTGGGCTTTTTAGTTATGATGTTGCCTT  843
      | ||||||||||| | |||||||||||| ||||||||||||||||||| |
seq2  GAAGTCAACATTCTACCCTCTGGTGGGC-TTTTAGTTATGATGTTGCC-T  846

seq1  TAAGCCATCCACGTTCCTATCAGCATACCCACATCCATTCTTCTGCAGGT  893
      ||||||||||||||||||||||||||| |||||||| |||||||||||  
seq2  TAAGCCATCCACGTTCCTATCAGCATA-CCACATCC-TTCTTCTGCAGTG  894

seq1  GATCTCAATATAGTCACTTGTTTGTTAGTTTTGTGTTGTTTTTGGTCAAT  943
      |||||||||||||||| ||||||| ||||| ||||     ||| ||| ||
seq2  GATCTCAATATAGTCA-TTGTTTGGTAGTTGTGTG-----TTTTGTC-AT  937

seq1  CTCAGTTTTCTATGAAGAATGAACACTTTTCTCCTTTCTTTCCAGGATCT  993
      ||||||||||  || || ||| |||||||||||  ||| |||||||||||
seq2  CTCAGTTTTC--TGGAG-ATG-ACACTTTTCTC--TTC-TTCCAGGATCT  980

seq1  GTCATAAAACATCTTGTATCAATTCTCCTTCTGATCAAATGTTTTAATTA  1043
      ||||| ||||||| |||||| ||||||  ||||||| ||||||   ||||
seq2  GTCAT-AAACATC-TGTATC-ATTCTC--TCTGATC-AATGTT---ATTA  1021

seq1  TTTCATT  1050
      |||||||
seq2  TTTCATT  1028