BAC Information

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BAC

Clone NameB6Ng01-049M13
Chromosome8 (Build37)
Map Location 37,044,835 - 37,173,466
singlet/doubletdoublet
Overlap geneLOC671641, D8Ertd82e
Upstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
Downstream geneLonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M13.bB6Ng01-049M13.g
ACCDH873946DH873947
length1,1011,011
definitionDH873946|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M13, 5' end.DH873947|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,172,360 - 37,173,466)(37,044,835 - 37,045,865)
sequence
gaattcttgtaatttgctgctcagaggaaaattctagatgattactacct
gaaaagagaattcttctggtaagaggggattggttccacacaactgctca
gcttaaaaccaaaccaaaccaaaccaaaccaaaaaactaagtagcaataa
gtagcagaggccacttgcaagactgaaacgtacaagtactggagagtaat
taatccaagaaagaatgcatggagccccaccgtgtttgcccaccttgaag
catggacaattattaacctcagcttattcaactcaaggtggcaacgttcc
actgagcaggggcaggcagggaattacaatgggtgcccagtgaaaagcta
gagagaaacttgcttactccatagtgtgctatggccttcttaaaaacgaa
acattccgcctgggcggtggtagcacagtcctttaatcccagcacttggg
aggcagagccacaagcagatggatgtctgagtctgaggccagcctggtct
acagagtgagttccaggacagccagggctacacagagaaatcctgtctcg
aaaaacaaaaacaagaacaaaacctaactaactaactattctgggctggc
aagatgatacagcatgtaagggcatctgcatgccctgaacccaatgctca
gaacccacccgaaggggaaactgactccacgaagttatctctgaccttta
cacacacagcctggcacatgcacctacacacatcatactcagcaataatt
tttggatgtttatttattctgtgctatgtgcacatgtgtgtgcatgtgtg
tactctgcacatcaagagcatggtgctcagaagacagtgttggggtgcat
gctgggaactaaacctgggtcttttccaaacgcaataaacactcttaact
atgaagtcatctctccatccccctaataataatttaaaaaaattcctccc
tgatttttactatatatggtcttgctaaagatgtggatagaaattctagc
aggaactcattgagacatatctggtgcacctctcgggatggagtctcctt
gaagaatgtaacgtggggcaggtttaatgtaatgcagggcacactggtgc
t
gaattctgttatctgttagcaatgtcataccaaataaagagagcagtggg
gaggaggtattggagggagcacatgttttactccaactctgcgtgcttta
attttaacatatcgaaaggctaatgattaagataaaacctagtccttaca
gtatacatttgtaattctagcagctgtctgaaagacacaggagaatggta
agttgaggggcagcctggtccatctcaaaaaagactccatctcaaataaa
gagaagttaataaatactaaataaatggcatggtcatgttaactcattac
tcattttaagaatgctaaagtttgggcatggtgctctgtgcttttaattc
cagcacttgggaggcagaggcaaatggatttctgagttcaaagtcagcct
ggtctacagagtgagtttctggacaaccagggctacacagagaaacccta
tcttagaaagtaaacaaacaaacaaacaaacaaacaaaccaaagaacaac
aacatcaacaaaaatagaatgataaatgtttactgtaaaacttttccaaa
tactcctatatagaaacataaaatcaccccgaaatctgagagaactgggc
accattacctcatatgcccagattttccaggtgtctagaattgggaaagg
gaaaggcctgcatatgcagtaagatgacccagggtgctgtgagtccagaa
taggctaaaaagcctgcagtttagcctgggtcatgtggagcttaatccat
tatttcccattgtaagatgctgtactttgtttttactgctaaggaagagc
tgacatttcattcacttgaaaggaatttttaaaagaaaggagaagaaaga
aagatggaaggacgacactgctgtattggtctgctaaattggataaaccc
aggccatatagagaagctatcatcctaagcacgaaataggcactgcttct
aaatgtatcctcacaatctctggaatgtcgtgaaatctgcacagcgaagc
tcagcacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_37172360_37173466
seq2: B6Ng01-049M13.b_50_1150 (reverse)

seq1  AGCA-CAGTGTGCCTTGCATTACATTAAAACTTGGCCCACGTTTTCATCT  49
      |||| ||||||||| ||||||||||| |||| || |||||| || ||| |
seq2  AGCACCAGTGTGCCCTGCATTACATT-AAACCTGCCCCACG-TTACAT-T  47

seq1  CTTCAA-GAGACTACATTCCCGAGA-GTGCACAAGTTATGTCTC-ATGAG  96
      |||||| |||||| || |||||||| |||||| || |||||||| |||||
seq2  CTTCAAGGAGACTCCA-TCCCGAGAGGTGCACCAGATATGTCTCAATGAG  96

seq1  TTCTTGCTTAGAATTTCTAT-CACATCTTTTAGCAAAGAACCATATATAG  145
      ||| ||| |||||||||||| |||||| ||||||||   |||||||||||
seq2  TTCCTGC-TAGAATTTCTATCCACATC-TTTAGCAA--GACCATATATAG  142

seq1  TAGATATTCAGGGAGGAATTTTTTTTTAAATTATTATTAGGGGGATGGAG  195
      || | | |||||||||||  ||||||||||||||||||||||||||||||
seq2  TA-AAAATCAGGGAGGAA--TTTTTTTAAATTATTATTAGGGGGATGGAG  189

seq1  AGATGACTTCATAGTTAAGAGTGTTTATTGCGTTTGGAAAAGACCCAGGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTTCATAGTTAAGAGTGTTTATTGCGTTTGGAAAAGACCCAGGT  239

seq1  TTAGTTCCCAGCATGCACCCCAACACTGTCTTCTGAGCACCATGCTCTTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCCAGCATGCACCCCAACACTGTCTTCTGAGCACCATGCTCTTG  289

seq1  ATGTGCAGAGTACACACATGCACACACATGTGCACATAGCACAGAATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGAGTACACACATGCACACACATGTGCACATAGCACAGAATAAA  339

seq1  TAAACATCCAAAAATTATTGCTGAGTATGATGTGTGTAGGTGCATGTGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCCAAAAATTATTGCTGAGTATGATGTGTGTAGGTGCATGTGCC  389

seq1  AGGCTGTGTGTGTAAAGGTCAGAGATAACTTCGTGGAGTCAGTTTCCCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGTGTGTAAAGGTCAGAGATAACTTCGTGGAGTCAGTTTCCCCT  439

seq1  TCGGGTGGGTTCTGAGCATTGGGTTCAGGGCATGCAGATGCCCTTACATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGGGTTCTGAGCATTGGGTTCAGGGCATGCAGATGCCCTTACATG  489

seq1  CTGTATCATCTTGCCAGCCCAGAATAGTTAGTTAGTTAGGTTTTGTTCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATCTTGCCAGCCCAGAATAGTTAGTTAGTTAGGTTTTGTTCTT  539

seq1  GTTTTTGTTTTTCGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTCGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGG  589

seq1  AACTCACTCTGTAGACCAGGCTGGCCTCAGACTCAGACATCCATCTGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCTGTAGACCAGGCTGGCCTCAGACTCAGACATCCATCTGCTT  639

seq1  GTGGCTCTGCCTCCCAAGTGCTGGGATTAAAGGACTGTGCTACCACCGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGCCTCCCAAGTGCTGGGATTAAAGGACTGTGCTACCACCGCC  689

seq1  CAGGCGGAATGTTTCGTTTTTAAGAAGGCCATAGCACACTATGGAGTAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGAATGTTTCGTTTTTAAGAAGGCCATAGCACACTATGGAGTAAG  739

seq1  CAAGTTTCTCTCTAGCTTTTCACTGGGCACCCATTGTAATTCCCTGCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTCTCTAGCTTTTCACTGGGCACCCATTGTAATTCCCTGCCTG  789

seq1  CCCCTGCTCAGTGGAACGTTGCCACCTTGAGTTGAATAAGCTGAGGTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCAGTGGAACGTTGCCACCTTGAGTTGAATAAGCTGAGGTTAA  839

seq1  TAATTGTCCATGCTTCAAGGTGGGCAAACACGGTGGGGCTCCATGCATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCCATGCTTCAAGGTGGGCAAACACGGTGGGGCTCCATGCATTC  889

seq1  TTTCTTGGATTAATTACTCTCCAGTACTTGTACGTTTCAGTCTTGCAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGATTAATTACTCTCCAGTACTTGTACGTTTCAGTCTTGCAAGT  939

seq1  GGCCTCTGCTACTTATTGCTACTTAGTTTTTTGGTTTGGTTTGGTTTGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCTACTTATTGCTACTTAGTTTTTTGGTTTGGTTTGGTTTGGT  989

seq1  TTGGTTTTAAGCTGAGCAGTTGTGTGGAACCAATCCCCTCTTACCAGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAAGCTGAGCAGTTGTGTGGAACCAATCCCCTCTTACCAGAAG  1039

seq1  AATTCTCTTTTCAGGTAGTAATCATCTAGAATTTTCCTCTGAGCAGCAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTTTCAGGTAGTAATCATCTAGAATTTTCCTCTGAGCAGCAAA  1089

seq1  TTACAAGAATTC  1107
      ||||||||||||
seq2  TTACAAGAATTC  1101

seq1: chr8_37044835_37045865
seq2: B6Ng01-049M13.g_67_1077

seq1  GAATTCTGTTATCTGTTAGCAATGTCATACCAAATAAAGAGAGCAGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATCTGTTAGCAATGTCATACCAAATAAAGAGAGCAGTGGG  50

seq1  GAGGAGGTATTGGAGGGAGCACATGTTTTACTCCAACTCTGCGTGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTATTGGAGGGAGCACATGTTTTACTCCAACTCTGCGTGCTTTA  100

seq1  ATTTTAACATATCGAAAGGCTAATGATTAAGATAAAACCTAGTCCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACATATCGAAAGGCTAATGATTAAGATAAAACCTAGTCCTTACA  150

seq1  GTATACATTTGTAATTCTAGCAGCTGTCTGAAAGACACAGGAGAATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATTTGTAATTCTAGCAGCTGTCTGAAAGACACAGGAGAATGGTA  200

seq1  AGTTGAGGGGCAGCCTGGTCCATCTCAAAAAAGACTCCATCTCAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGGGCAGCCTGGTCCATCTCAAAAAAGACTCCATCTCAAATAAA  250

seq1  GAGAAGTTAATAAATACTAAATAAATGGCATGGTCATGTTAACTCATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTAATAAATACTAAATAAATGGCATGGTCATGTTAACTCATTAC  300

seq1  TCATTTTAAGAATGCTAAAGTTTGGGCATGGTGCTCTGTGCTTTTAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAGAATGCTAAAGTTTGGGCATGGTGCTCTGTGCTTTTAATTC  350

seq1  CAGCACTTGGGAGGCAGAGGCAAATGGATTTCTGAGTTCAAAGTCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGGCAAATGGATTTCTGAGTTCAAAGTCAGCCT  400

seq1  GGTCTACAGAGTGAGTTTCTGGACAACCAGGGCTACACAGAGAAACCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTTCTGGACAACCAGGGCTACACAGAGAAACCCTA  450

seq1  TCTTAGAAAGTAAACAAACAAACAAACAAACAAACAAACCAAAGAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAAGTAAACAAACAAACAAACAAACAAACAAACCAAAGAACAAC  500

seq1  AACATCAACAAAAATAGAATGATAAATGTTTACTGTAAAACTTTTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAACAAAAATAGAATGATAAATGTTTACTGTAAAACTTTTCCAAA  550

seq1  TACTCCTATATAGAAACATAAAATCACCCCGAAATCTGAGAGAACTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTATATAGAAACATAAAATCACCCCGAAATCTGAGAGAACTGGGC  600

seq1  ACCATTACCTCATATGCCCAGATTTTCCAGGTGTCTAGAATTGGGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACCTCATATGCCCAGATTTTCCAGGTGTCTAGAATTGGGAAAGG  650

seq1  GAAAGGCCTGCATATGCAGTAAGATGACCCAGGGTGCTGTGAGTCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCTGCATATGCAGTAAGATGACCCAGGGTGCTGTGAGTCCAGAA  700

seq1  TAGGCTAAACAAGCCTGCAGTTTAGCCTGGGTCATGTGGAGCTTAATCCC  750
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGCTAAA-AAGCCTGCAGTTTAGCCTGGGTCATGTGGAGCTTAAT-CC  748

seq1  ATTATTTCCCATTGTAAGATGCTGTACTTTGTTTTTACTGCTAAGGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCCATTGTAAGATGCTGTACTTTGTTTTTACTGCTAAGGAAGA  798

seq1  GCTGACATTTCATTCACTTGAAAGGAATTTTTAAAAAGAAAGGAAGAAGA  850
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  GCTGACATTTCATTCACTTGAAAGGAATTTTT-AAAAGAAAGG-AGAAGA  846

seq1  AAGAAAAGAAGGAAGGAAGGACACTGCTGTATTGGTCTGCTAAATTGGAT  900
      ||| ||||| |||||| | |||||||||||||||||||||||||||||||
seq2  AAG-AAAGATGGAAGG-ACGACACTGCTGTATTGGTCTGCTAAATTGGAT  894

seq1  AAAACCCAGGCCAGTATAGAGAAGCTATCATCCTAAGCACAGAAATAGGC  950
       |||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  -AAACCCAGGCCA-TATAGAGAAGCTATCATCCTAAGCAC-GAAATAGGC  941

seq1  ACTTGGCTTCTTAAAAATGTAACCCCAACAATCTCTTGGAATGTTCGTGG  1000
      |||  ||||||   ||||||| || | |||||||| ||||||| ||||| 
seq2  ACT--GCTTCT---AAATGTATCCTC-ACAATCTC-TGGAATG-TCGTG-  982

seq1  AAATTCTGCACAGCAGAGTCTCAGCACATCT  1031
       || |||||||||| ||  ||||||||||||
seq2  -AAATCTGCACAGC-GAAGCTCAGCACATCT  1011