BAC Information

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BAC

Clone NameB6Ng01-050C09
Chromosome8 (Build37)
Map Location 112,988,599 - 113,129,227
singlet/doubletdoublet
Overlap geneHydin
Upstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, LOC672398
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C09.bB6Ng01-050C09.g
ACCDH874188DH874189
length945955
definitionDH874188|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C09, 5' end.DH874189|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,128,251 - 113,129,227)(112,988,599 - 112,989,580)
sequence
gaattccattaaaaaatccctgagttcttttctttgcctttatttttttc
tgagcaacttggcctcaagatttgcatagaaataaagagtcaagaatagc
tgacataatcctgaatagtaataagagtataagccatcacgagagttaac
gagagttaactcagtggctgcagctttacttgctgtcaacaagcccttct
ctaagctgatgtgcataagacacatcaattccctattcccagagatggga
gatcaagtaggctcagaataacaagagcaagctaacgtctataatgaaac
agagagtaaaggcaacttcagactcaaacgttgggagagccaaatgacat
gaacctggtgtcattctagctcctgcttggttgggatcatcaacactgag
agccagagaacccagctcaccccttaactgaggggatccacgtgacctgg
aaaccttggtgggataatctgacaaaggcaggggaagctggaggactggt
ttgtttgactctgaggtgcagtcatagaattagcctagtgggggcagtag
agaacatttgattactcaaaaactgagaggctaggacaaaaataggaaga
tcatgagtttgaggccatcctgggtgacccagggagacactgcctcagag
aagccaacccaaacccaacttaaagcaaaacaccatggacaagaactgac
caatggctggatcctacttctgaaacagcccagctggagagaaatctctg
agtagagcttactggatcacaccaaagacacaggagacaaaggacagatt
aaaccccactgacatggcagtgtgcaaaggaaactaagtaatcctgagca
aagagagctgagtagtgagggacagcagagcgacagagctgagaggacgt
agagcagattcataacattagacagtgattgatgataactgatag
gaattcactttcaataggtttccaggtagcatttccatacatacttggtt
cctcttcttccttactcccatccctagtctccctgcctttctgtctactt
aatctacatagatggtttggttgcgatggggggggaacatgctatgcaga
agctttttcccccccttcatatagtcagtccctttgtcagttctcagagc
agttgcctgtgctagtaggtgtccgttcagaaatctgtaacctagaccca
tgcctgtactgtcactgtctcaagcttcaaattaacatctctgctccagc
ttgaactgatttctgtacaggatgcgacatggatctaattcccctcttct
gcgggcatctgtggtttctaagatagtctctcactagcctggagcttttc
aaagaagctaggctgactggccagtgagcctctggaatgtgctaccttcc
ctatgctgggattgcaggcatgtgccaccataccatgctttctgggtgtg
atctgtgtcttcatgctcttacagcaaacacttgaccagccgagctttcc
tcctctgcctctacagtttgatgtttcactttattttagtttttgggtgg
ggtgcaggccatggcatgcacgtggaggtcagggtatagctttacaggag
ttggttcattccttctatgtgagtccaggggatcaaactcaggtcgtcag
ggcttacaacaggtccctttaactgatgggccatctagttttcctaatag
cacttcaacccaacatatggagtatgctctgagtgtccagcccgttgcac
ttcatattgcttgttcctgacgcttggaggtttctgttctggaccatact
tccttatgtctaacatgcacgagctaaaacgtagagatggtgacatttct
agcctgtacaggactgagagtatgaactacccctgcatgtttggcgccgt
ggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113128251_113129227
seq2: B6Ng01-050C09.b_44_988 (reverse)

seq1  CTATCAGTTTATCATTCCAAAATTCACTGTCTAAATGTTATTGAAATCCC  50
      ||||||| |||||||  |||   ||||||||| ||||||| ||||    |
seq2  CTATCAG-TTATCAT--CAA---TCACTGTCT-AATGTTA-TGAA---TC  39

seq1  TGCTCTAACGTCCCTCCTCAGCTCTTGTCCGGCTCTGCCTTGTCCCCTTC  100
      |||||| ||||||   |||||||| ||||  |||||||  ||||||  ||
seq2  TGCTCT-ACGTCC--TCTCAGCTC-TGTC--GCTCTGC--TGTCCC--TC  79

seq1  ACTACTCCAGCCTCTTCCTTTGCCTCCAGGATTTAACTTAGTTTCCTTTG  150
      |||||| ||| ||||  ||||||   |||||||  |||||||||||||||
seq2  ACTACT-CAG-CTCT--CTTTGC--TCAGGATT--ACTTAGTTTCCTTTG  121

seq1  CACACCTGCCCATTGTCAGTGGGGTTTAATCTGTCCTTTGTCTCCTGTGT  200
      |||| |||||   |||||||||||||||||||||||||||||||||||||
seq2  CACA-CTGCC--ATGTCAGTGGGGTTTAATCTGTCCTTTGTCTCCTGTGT  168

seq1  CTTTGGTGTGATCCAGTAAGCTCTACTCAGAGATTTCTCTCCAGCTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTGATCCAGTAAGCTCTACTCAGAGATTTCTCTCCAGCTGGGC  218

seq1  TGTTTCAGAAGTAGGATCCAGCCATTGGTCAGTTCTTGTCCATGGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAAGTAGGATCCAGCCATTGGTCAGTTCTTGTCCATGGTGTTT  268

seq1  TGCTTTAAGTTGGGTTTGGGTTGGCTTCTCTGAGGCAGTGTCTCCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGTTGGGTTTGGGTTGGCTTCTCTGAGGCAGTGTCTCCCTGGG  318

seq1  TCACCCAGGATGGCCTCAAACTCATGATCTTCCTATTTTTGTCCTAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGGATGGCCTCAAACTCATGATCTTCCTATTTTTGTCCTAGCCT  368

seq1  CTCAGTTTTTGAGTAATCAAATGTTCTCTACTGCCCCCACTAGGCTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTTTGAGTAATCAAATGTTCTCTACTGCCCCCACTAGGCTAATT  418

seq1  CTATGACTGCACCTCAGAGTCAAACAAACCAGTCCTCCAGCTTCCCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTGCACCTCAGAGTCAAACAAACCAGTCCTCCAGCTTCCCCTGC  468

seq1  CTTTGTCAGATTATCCCACCAAGGTTTCCAGGTCACGTGGATCCCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAGATTATCCCACCAAGGTTTCCAGGTCACGTGGATCCCCTCAG  518

seq1  TTAAGGGGTGAGCTGGGTTCTCTGGCTCTCAGTGTTGATGATCCCAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGGTGAGCTGGGTTCTCTGGCTCTCAGTGTTGATGATCCCAACCA  568

seq1  AGCAGGAGCTAGAATGACACCAGGTTCATGTCATTTGGCTCTCCCAACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCTAGAATGACACCAGGTTCATGTCATTTGGCTCTCCCAACGT  618

seq1  TTGAGTCTGAAGTTGCCTTTACTCTCTGTTTCATTATAGACGTTAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGAAGTTGCCTTTACTCTCTGTTTCATTATAGACGTTAGCTTG  668

seq1  CTCTTGTTATTCTGAGCCTACTTGATCTCCCATCTCTGGGAATAGGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTATTCTGAGCCTACTTGATCTCCCATCTCTGGGAATAGGGAAT  718

seq1  TGATGTGTCTTATGCACATCAGCTTAGAGAAGGGCTTGTTGACAGCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTCTTATGCACATCAGCTTAGAGAAGGGCTTGTTGACAGCAAGT  768

seq1  AAAGCTGCAGCCACTGAGTTAACTCTCGTTAACTCTCGTGATGGCTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCAGCCACTGAGTTAACTCTCGTTAACTCTCGTGATGGCTTATA  818

seq1  CTCTTATTACTATTCAGGATTATGTCAGCTATTCTTGACTCTTTATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTACTATTCAGGATTATGTCAGCTATTCTTGACTCTTTATTTCT  868

seq1  ATGCAAATCTTGAGGCCAAGTTGCTCAGAAAAAAATAAAGGCAAAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATCTTGAGGCCAAGTTGCTCAGAAAAAAATAAAGGCAAAGAAAA  918

seq1  GAACTCAGGGATTTTTTAATGGAATTC  977
      |||||||||||||||||||||||||||
seq2  GAACTCAGGGATTTTTTAATGGAATTC  945

seq1: chr8_112988599_112989580
seq2: B6Ng01-050C09.g_66_1020

seq1  GAATTCACTTTCAATAGGTTTCCAGGTAGCATTTCCATACATACTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCAATAGGTTTCCAGGTAGCATTTCCATACATACTTGGTT  50

seq1  CCTCTTCTTCCTTACTCCCATCCCTAGTCTCCCTGCCTTTCTGTCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTCCTTACTCCCATCCCTAGTCTCCCTGCCTTTCTGTCTACTT  100

seq1  AATCTACATAGATGGTTTGGTTGCGATGGGGGGGGAACATGCTATGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACATAGATGGTTTGGTTGCGATGGGGGGGGAACATGCTATGCAGA  150

seq1  AGCTTTTTCCCCCCCTTCATATAGTCAGTCCCTTTGTCAGTTCTCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCCCCCCCTTCATATAGTCAGTCCCTTTGTCAGTTCTCAGAGC  200

seq1  AGTTGCCTGTGCTAGTAGGTGTCCGTTCAGAAATCTGTAACCTAGACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTGTGCTAGTAGGTGTCCGTTCAGAAATCTGTAACCTAGACCCA  250

seq1  TGCCTGTACTGTCACTGTCTCAAGCTTCAAATTAACATCTCTGCTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACTGTCACTGTCTCAAGCTTCAAATTAACATCTCTGCTCCAGC  300

seq1  TTGAACTGATTTCTGTACAGGATGCGACATGGATCTAATTCCCCTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGATTTCTGTACAGGATGCGACATGGATCTAATTCCCCTCTTCT  350

seq1  GCGGGCATCTGTGGTTTCTAAGATAGTCTCTCACTAGCCTGGAGCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCATCTGTGGTTTCTAAGATAGTCTCTCACTAGCCTGGAGCTTTTC  400

seq1  AAAGAAGCTAGGCTGACTGGCCAGTGAGCCTCTGGAATGTGCTACCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTAGGCTGACTGGCCAGTGAGCCTCTGGAATGTGCTACCTTCC  450

seq1  CTATGCTGGGATTGCAGGCATGTGCCACCATACCATGCTTTCTGGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGGGATTGCAGGCATGTGCCACCATACCATGCTTTCTGGGTGTG  500

seq1  ATCTGTGTCTTCATGCTCTTACAGCAAACACTTGACCAGCCGAGCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTCTTCATGCTCTTACAGCAAACACTTGACCAGCCGAGCTTTCC  550

seq1  TCCTCTGCCTCTACAGTTTGATGTTTCACTTTA-TTTAGTTTTTGGGTGG  599
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCTCTGCCTCTACAGTTTGATGTTTCACTTTATTTTAGTTTTTGGGTGG  600

seq1  GGTGCAGGCCATGGCATGCACGTGGAGGTCAGGGTATAGC-TTACAGGAG  648
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTGCAGGCCATGGCATGCACGTGGAGGTCAGGGTATAGCTTTACAGGAG  650

seq1  TTGGTTCATTCCTTCTATGTGAGTCCAGGGGATCAAACTCAGGTCGTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCATTCCTTCTATGTGAGTCCAGGGGATCAAACTCAGGTCGTCAG  700

seq1  GGCTTAGCAGCAGGTCCCTTTAACTGATGGGCCATCTTAGTTTTCCTAAT  748
      |||||| || |||||||||||||||||||||||||| |||||||||||||
seq2  GGCTTA-CAACAGGTCCCTTTAACTGATGGGCCATC-TAGTTTTCCTAAT  748

seq1  AAGCACGTCAAACCCAACATATGGAGTATGCTCTGAGTGTCCAAGCCCGT  798
       ||||| || |||||||||||||||||||||||||||||||| |||||||
seq2  -AGCACTTC-AACCCAACATATGGAGTATGCTCTGAGTGTCC-AGCCCGT  795

seq1  TGCACTTCATATTGCTTGTTCTGAACGCTTGGAAGGGTTTCTGTTTCTGG  848
      |||||||||||||||||||||   |||||||||  |||||||| ||||||
seq2  TGCACTTCATATTGCTTGTTCCTGACGCTTGGA--GGTTTCTG-TTCTGG  842

seq1  ACCATACCTTCTTTATGTCTAGACATGCACAGAGCTAGAAAACAGTAGAA  898
      |||||| |||| ||||||||| |||||||| |||||  ||||| |||| |
seq2  ACCATA-CTTCCTTATGTCTA-ACATGCAC-GAGCT--AAAAC-GTAG-A  885

seq1  GATGGTGACCATTTTCTTAGTCTGTGACAAGGACTGATGAAGTAATGTAC  948
      |||||||| |||||   ||| |||| || ||||||||   ||| ||| ||
seq2  GATGGTGA-CATTT--CTAGCCTGT-AC-AGGACTGA--GAGT-ATGAAC  927

seq1  ACTTACTCCCTGCATGTTTTGACAGCCGTGGAGG  982
         ||| |||||||||||| |   ||||||||||
seq2  ---TAC-CCCTGCATGTTTGG--CGCCGTGGAGG  955