BAC Information

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BAC

Clone NameB6Ng01-050F04
Chromosome8 (Build37)
Map Location 104,725,554 - 104,860,280
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F04.bB6Ng01-050F04.g
ACCDH874304DH874305
length1,1211,029
definitionDH874304|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F04, 5' end.DH874305|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,725,554 - 104,726,714)(104,859,222 - 104,860,280)
sequence
gaattctttgttggcctactcagtagcagccaaggcaaatggctctaata
taacagagaaaagacaacgtttacaagaataatggacagtaatgatcaca
gccaacatggaggtctttcaaaccatcattatggtaagacagggaatcac
atgtccaggtatgagtttcacttctagttaatcttccagagttttacagt
gtttactgattatcattctcccttcacgtctctgaactcccagtgatccc
acacaaggccacatcccacatttgtcttataattttgttgttgttgttgt
ttattctatggtttattgagcttaacaagtaccatccatttcactatgga
ttgagaactaataattggagcctagaagatctagaaaagcattggtattt
gaaaactataatcttataattcttgagtcccctattgatgtaatgttcgg
gtgtgtattcaggtaggcaggtgaaattaaatttactgatgctgaagaag
taaattttacatttccatagaaatgtggtttggggaaaaataaaccatct
gttaagggaactaataaattattatgaaatatcctgttcttgggacatta
attagaaataaactgaagttactaggaaatttccactgaatttagattct
gagagttatctcttaggaacccaattttttaataataactaaaatatttt
caacactctttaagaaatgagctgggctgtctttaaaatgcggtgaagaa
taagagaaaggtttcatattttaagtgacaaactaaaattagaaaaatga
aggtatatttcaggtactttaaacatcagccccttaaatttccatgacca
tatgatagtgaagatggaaaaaaagagcagagaaattaaacagagataga
tggggatgcttgataaagtgatgagatatgatagaataaaaatgatgata
tgtgatagcagtggtatataacatgggtgcacagtcatgagcagctagga
gacatacacacagatccaggtattaaacgactccatgccacctgtttctc
cttcaatacatactctgcttggcagaatggatgggtctggagatagactg
cctaaatttcatgtattattg
gaattctagtgattttccagtttttccattttagacttgaagcactgtac
attcctttacaatttgtcatttaatagattgaagtgtgaacttttcagag
atatgatttcccacatctcctggtatcttcataagtattttgacagaaag
atgtgaagaataattatcaaaggccatcataagacaactttataactttc
ttttgataaggaatgggcagaagaatattctatactcaactttagagtat
tctattttccttttatgtatgccattccatgtcatgataagagtttatat
aaaattaatgtgttccctctaccaagcctaaatgacttaattttggatat
atagacattttcaatgattaaatattagtatgtggaaattgatgggcctc
ctaagaaccagagagctcccaaccctcctttatgttttgtctaaggcaga
atttagagggttttaatagacttcagaagggctagaaatctccatatata
ctgtctacccagacctgatttatagctaagtttcctgtggaatttttatg
tgactctttattttccctgagggtgacttgttaactcttggttgggaaat
gttaatttctaagcacaaacaaagcaaaattcattcattttaataaggag
cattgaagttttgatggccaacatattcttttgcaaataaacttgtttgc
cagatttctaaggaattgaggagcacaaaaacaaatgtaattctttaact
tctagattattcacacagtggacagattcaagcatctgtgaaactgcagc
acttctcattctgtggctcatagaaaaaaaaagttgggagatatataatt
tctcttctggactttacttctttcttctcaaatgagtatacttatgctct
cataaagatttaatttctagccacagaaaatctatacatgttggtagtag
acacaaatgctctatttacatcttttcacttttattctctccacaagaat
gctgattaatatgagttttgcaccacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104725554_104726714
seq2: B6Ng01-050F04.b_46_1166

seq1  GAATTCTTTGTTGGCCTACTCAGTAGCAGCCAAGGCAAATGGCTCTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTGGCCTACTCAGTAGCAGCCAAGGCAAATGGCTCTAATA  50

seq1  TAACAGAGAAAAGACAACGTTTACAAGAATAATGGACAGTAATGATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGAAAAGACAACGTTTACAAGAATAATGGACAGTAATGATCACA  100

seq1  GCCAACATGGAGGTCTTTCAAACCATCATTATGGTAAGACAGGGAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATGGAGGTCTTTCAAACCATCATTATGGTAAGACAGGGAATCAC  150

seq1  ATGTCCAGGTATGAGTTTCACTTCTAGTTAATCTTCCAGAGTTTTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGTATGAGTTTCACTTCTAGTTAATCTTCCAGAGTTTTACAGT  200

seq1  GTTTACTGATTATCATTCTCCCTTCACGTCTCTGAACTCCCAGTGATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGATTATCATTCTCCCTTCACGTCTCTGAACTCCCAGTGATCCC  250

seq1  ACACAAGGCCACATCCCACATTTGTCTTATAATTTTGTTGTTGTTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGCCACATCCCACATTTGTCTTATAATTTTGTTGTTGTTGTTGT  300

seq1  TTATTCTATGGTTTATTGAGCTTAACAAGTACCATCCATTTCACTATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTATGGTTTATTGAGCTTAACAAGTACCATCCATTTCACTATGGA  350

seq1  TTGAGAACTAATAATTGGAGCCTAGAAGATCTAGAAAAGCATTGGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACTAATAATTGGAGCCTAGAAGATCTAGAAAAGCATTGGTATTT  400

seq1  GAAAACTATAATCTTATAATTCTTGAGTCCCCTATTGATGTAATGTTCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATAATCTTATAATTCTTGAGTCCCCTATTGATGTAATGTTCGG  450

seq1  GTGTGTATTCAGGTAGGCAGGTGAAATTAAATTTACTGATGCTGAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTCAGGTAGGCAGGTGAAATTAAATTTACTGATGCTGAAGAAG  500

seq1  TAAATTTTACATTTCCATAGAAATGTGGTTTGGGGAAAAATAAACCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTACATTTCCATAGAAATGTGGTTTGGGGAAAAATAAACCATCT  550

seq1  GTTAAGGGAACTAATAAATTATTATGAAATATCCTGTTCTTGGGACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGGAACTAATAAATTATTATGAAATATCCTGTTCTTGGGACATTA  600

seq1  ATTAGAAATAAACTGAAGTTACTAGGAAATTTCCACTGAATTTAGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATAAACTGAAGTTACTAGGAAATTTCCACTGAATTTAGATTCT  650

seq1  GAGAGTTATCTCTTAGGAACCCAATTTTTTAATAATAACTAAAATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTATCTCTTAGGAACCCAATTTTTTAATAATAACTAAAATATTTT  700

seq1  CAACACTCTTTAAGAAATGAGCTGGGCTGTCTTTAAAATGCGGTGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCTTTAAGAAATGAGCTGGGCTGTCTTTAAAATGCGGTGAAGAA  750

seq1  TAAGAGAAAGGTTTCATATTTTAAGTGACAAACTAAAATTAGAAAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAGGTTTCATATTTTAAGTGACAAACTAAAATTAGAAAAATGA  800

seq1  AGGTATATTTCAGGTACTTTAAACATCAGCCCCTTAAATTTTCCATGACC  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTATATTTCAGGTACTTTAAACATCAGCCCCTTAAA-TTTCCATGACC  849

seq1  ATATGATAGTGAAGATGGAAAAAAAAGAGCAAGAAGAAATTAAACAAGGA  900
      |||||||||||||||||| ||||||||||||   ||||||||||||  | 
seq2  ATATGATAGTGAAGATGG-AAAAAAAGAGCA--GAGAAATTAAACAGAG-  895

seq1  AGAATAGAATGGGGATGCTTGATAAAGGTGATGAAGAATATGATAGAAAA  950
         |||| |||||||||||||||||| |||||||   ||||||||||| |
seq2  ---ATAG-ATGGGGATGCTTGATAAA-GTGATGA--GATATGATAGAATA  938

seq1  AAAATGATGATATTGGTGATAGCAGTGGTAATATAACAATGGGTGCAACA  1000
      |||||||||||||  |||||||||||||| ||||||| |||||||| |||
seq2  AAAATGATGATAT--GTGATAGCAGTGGT-ATATAAC-ATGGGTGC-ACA  983

seq1  GGTCATGAAGCAGGCTAAGGAGACATTACACACAGAATCCCAGGGTATTA  1050
       |||||| |||| ||| |||||||| ||||||||| ||||   |||||| 
seq2  -GTCATG-AGCA-GCT-AGGAGACA-TACACACAG-ATCC--AGGTATT-  1024

seq1  AAACGACTCCATGCACCCCTGTTTCTCCTTCAAATACATACTCTGGCTTT  1100
      |||||||||||||| | |||||||||||||| |||||||||||| |||| 
seq2  AAACGACTCCATGC-CACCTGTTTCTCCTTC-AATACATACTCT-GCTT-  1070

seq1  GGGCAGGATTGAGATGTGTCCTGGAAGATAGACTGCCCTAAATTTTCATG  1150
       ||||| ||   |||| || |||| |||||||||| |||||| |||||||
seq2  -GGCAGAAT--GGATGGGT-CTGG-AGATAGACTG-CCTAAA-TTTCATG  1113

seq1  TTAATTTATTG  1161
      |    ||||||
seq2  T---ATTATTG  1121

seq1: chr8_104859222_104860280
seq2: B6Ng01-050F04.g_67_1095 (reverse)

seq1  GTTGTGATGCAAAAAGACTTCACTATTAAATCAGCCATCTTTGTGGGAGA  50
      |||||| |||||||     ||| |||| |||||| |||  |||| |||||
seq2  GTTGTGGTGCAAAA----CTCA-TATT-AATCAG-CATTCTTGT-GGAGA  42

seq1  G-ATAAAAGTTGGAAATAGATGTAAATAGAGCATTTTGTGTCTACTACAC  99
      | ||||||||  |||| |||||||||||||||| ||||||||||||||  
seq2  GAATAAAAGT--GAAA-AGATGTAAATAGAGCA-TTTGTGTCTACTACCA  88

seq1  ACATGTTATTAGATTTTCTGTGGCTAGGAAATTTAAATTCCTTTTTAATG  149
      ||||||   ||||||||||||||||||  || ||||||  ||||   |||
seq2  ACATGT--ATAGATTTTCTGTGGCTAG--AAATTAAAT--CTTT---ATG  129

seq1  AGGAGCATAAGTATAACTCATTTGGAGAAGAAAGAAGTAAAGTCCAAGAA  199
      | |||||||||||| |||||||| ||||||||||||||||||||| ||||
seq2  A-GAGCATAAGTAT-ACTCATTT-GAGAAGAAAGAAGTAAAGTCC-AGAA  175

seq1  GGAGGAAATTAATATATCTCCCAACTTTTTTTTTCTATGAGCCACAGAAT  249
      |   |||||| |||||||||||||||||||||||||||||||||||||||
seq2  G--AGAAATT-ATATATCTCCCAACTTTTTTTTTCTATGAGCCACAGAAT  222

seq1  GAGAAGTGCTGCAGTTTCAACAGATGCTTGAATCTTGTCCCACTGTGTGA  299
      |||||||||||||||||| ||||||||||||||| ||| |||||||||||
seq2  GAGAAGTGCTGCAGTTTC-ACAGATGCTTGAATC-TGT-CCACTGTGTGA  269

seq1  ATAATCTAGAAGTTAAAGAATTACATTTGTTTTTGTGCTCCTCAATTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAGAAGTTAAAGAATTACATTTGTTTTTGTGCTCCTCAATTCCT  319

seq1  TAGAAATCTGGCAAACAAGTTTATTTGCAAAAGAATATGTTGGCCATCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCTGGCAAACAAGTTTATTTGCAAAAGAATATGTTGGCCATCAA  369

seq1  AACTTCAATGCTCCTTATTAAAATGAATGAATTTTGCTTTGTTTGTGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAATGCTCCTTATTAAAATGAATGAATTTTGCTTTGTTTGTGCTT  419

seq1  AGAAATTAACATTTCCCAACCAAGAGTTAACAAGTCACCCTCAGGGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAACATTTCCCAACCAAGAGTTAACAAGTCACCCTCAGGGAAAA  469

seq1  TAAAGAGTCACATAAAAATTCCACAGGAAACTTAGCTATAAATCAGGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCACATAAAAATTCCACAGGAAACTTAGCTATAAATCAGGTCT  519

seq1  GGGTAGACAGTATATATGGAGATTTCTAGCCCTTCTGAAGTCTATTAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGACAGTATATATGGAGATTTCTAGCCCTTCTGAAGTCTATTAAAA  569

seq1  CCCTCTAAATTCTGCCTTAGACAAAACATAAAGGAGGGTTGGGAGCTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAATTCTGCCTTAGACAAAACATAAAGGAGGGTTGGGAGCTCTC  619

seq1  TGGTTCTTAGGAGGCCCATCAATTTCCACATACTAATATTTAATCATTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTAGGAGGCCCATCAATTTCCACATACTAATATTTAATCATTGA  669

seq1  AAATGTCTATATATCCAAAATTAAGTCATTTAGGCTTGGTAGAGGGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTATATATCCAAAATTAAGTCATTTAGGCTTGGTAGAGGGAACA  719

seq1  CATTAATTTTATATAAACTCTTATCATGACATGGAATGGCATACATAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTATATAAACTCTTATCATGACATGGAATGGCATACATAAAA  769

seq1  GGAAAATAGAATACTCTAAAGTTGAGTATAGAATATTCTTCTGCCCATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAGAATACTCTAAAGTTGAGTATAGAATATTCTTCTGCCCATTC  819

seq1  CTTATCAAAAGAAAGTTATAAAGTTGTCTTATGATGGCCTTTGATAATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAAAAGAAAGTTATAAAGTTGTCTTATGATGGCCTTTGATAATTA  869

seq1  TTCTTCACATCTTTCTGTCAAAATACTTATGAAGATACCAGGAGATGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACATCTTTCTGTCAAAATACTTATGAAGATACCAGGAGATGTGG  919

seq1  GAAATCATATCTCTGAAAAGTTCACACTTCAATCTATTAAATGACAAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATATCTCTGAAAAGTTCACACTTCAATCTATTAAATGACAAATT  969

seq1  GTAAAGGAATGTACAGTGCTTCAAGTCTAAAATGGAAAAACTGGAAAATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAATGTACAGTGCTTCAAGTCTAAAATGGAAAAACTGGAAAATC  1019

seq1  ACTAGAATTC  1059
      ||||||||||
seq2  ACTAGAATTC  1029