BAC Information

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BAC

Clone NameB6Ng01-050L04
Chromosome8 (Build37)
Map Location 114,526,922 - 114,527,940
singlet/doubletsinglet
Overlap geneKars
Upstream geneDdx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1
Downstream geneTerf2ip, EG627828, LOC672498, LOC100042040, Cntnap4, LOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L04.bB6Ng01-050L04.g
ACCDH874565DH874566
length1,1961,004
definitionDH874565|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L04, 5' end.DH874566|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaccgcgagaacctcccacaaaaagcctagcatggcggtatgt
gcttataatctcagggtagaagaggaggagacaagtgaacctctgaggct
cactggccagccaatccagtttacacagcaactccagcccaacaaaacca
ggtggagccggtgggatgactcattgggtaacggaatttgccaagcctga
ggacctgagagtaattcccaaaacctatatggcagaaggatagaatcaac
tcctaaaaatttccctctgactttcatacatagaccacagcgtgcacatg
tgtgcatatacacacattcaataatataatagacattttaaaagagtggt
acattatttatttaaaagaaaaaaaacagaatggtgcctgaggaacaata
gccaaggttgacttctgccttgcacacacacacacacatgaatatgtacc
caacgcacacacatgccctcacacacacacatgaatatgtacccaaagca
cacagtccccgcatgcaaatgcctcaccagggctttgtttcctggatgct
caaagaattccttatcattaacgtctaatgggttttctagaatatatggt
cccgtgttgaccattctggccagttttctctggtttgtttttgtcccctt
tccataggtagatcctacccatccttttatttcccgaaatattcctgttt
ctttttcttctttttttactacttggggacaagctcaggtcttgcccatg
ctaggcgggtggttcatctactaagctgcctccctgcccagggcagtttt
ccttaaatgacattcttcgttgcattctttttgtgtaagtgtcttcaaaa
cttcagaacaatggaagcctccctgcctgttttggtttctcaagatgctg
ttgaagtgattccctggaaaagtgtgctaactggatgcatggagggaaga
ttacagtaagaacattcgaaggagacagagtccatatgcagacgagactt
catttgataattcaagctctggctgagtaggatatggctaatacgaatat
ggaaaaaatcgactgatgacagaccttcaataaagcttgagtcatatgct
tggaaatttgaagctacaatctgagtacaggaatctagctaacatgtccg
tatcaacaatatcagtagtactcagtagagtagactatgctcgatg
gaattccacccatgccccagggctgctctattctctgtgagtagatagaa
aggcaccgtctatccccaccagctgggacagtgcagcatgagatctcaag
tttgaggccaggctagggcacacagcaatatctggactcaaaaaaaccaa
aaggggcagagggtgcaagaccagcccaggccctcctctgtgttagcata
gaagcctgcccttgtgagctgagaggcgagtgaactgtcagggacctgcc
tacctgccactttgagggtgacatcagtcaggtggtccccaggctgcagg
tgactatattcttggatgaactgagtgagtgagatgtccacgtggaactt
gtgtgggtacggatcctccccagtgaccttcagctgctggacggcttgac
ttcggatcttgtagtattgctgttaaaaaaagaaaaagaaaaaagagcta
gtccttctgaagtggaaccctgtcaggtgtggcttcttcagcagagtatc
acatttaattacgtttccttgtcacaatgacagaataccttacagggagt
attctagtttaagagaatatggttacagcagggaaagcgagacagcacag
tggcttgtccaggccttcagaggtttatgaccgtcatctctgcagatcgt
gcagacacacacacatgtttgggaagaatgaagctgaaccccacccatta
agactcacagcagggggctgggtgagattggcggctggaaagatggctca
gaccacggactggctcttccaagggtcctgaggttcaattcttagcaaca
ccatggtgggcttacaccacccgtaatgagaatctgacgccctctttctg
gtgggtttgagatagctacgtgtactctatcatgaaataaataaaatacc
ttttaaaaaatgaatgttagattcacgatgattttaaatacaggtcactg
attaaaaaaaaagaggtctcctaataccaacttatgctgcagacgtctcc
cttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114526922_114527940
seq2: B6Ng01-050L04.g_70_1073

seq1  GAATTCCACCCATGCCCCAGGGCTGCTCTATTCTCTGTGAGTAGATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCATGCCCCAGGGCTGCTCTATTCTCTGTGAGTAGATAGAA  50

seq1  AGGCACCGTCTATCCCCACCAGCTGGGACAGTGCAGCATGAGATCTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCGTCTATCCCCACCAGCTGGGACAGTGCAGCATGAGATCTCAAG  100

seq1  TTTGAGGCCAGGCTAGGGCACACAGCAATATCTGGACTCAAAAAAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGGCTAGGGCACACAGCAATATCTGGACTCAAAAAAACCAA  150

seq1  AAGGGGCAGAGGGTGCAAGACCAGCCCAGGCCCTCCTCTGTGTTAGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCAGAGGGTGCAAGACCAGCCCAGGCCCTCCTCTGTGTTAGCATA  200

seq1  GAAGCCTGCCCTTGTGAGCTGAGAGGCGAGTGAACTGTCAGGGACCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGCCCTTGTGAGCTGAGAGGCGAGTGAACTGTCAGGGACCTGCC  250

seq1  TACCTGCCACTTTGAGGGTGACATCAGTCAGGTGGTCCCCAGGCTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCCACTTTGAGGGTGACATCAGTCAGGTGGTCCCCAGGCTGCAGG  300

seq1  TGACTATATTCTTGGATGAACTGAGTGAGTGAGATGTCCACGTGGAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATATTCTTGGATGAACTGAGTGAGTGAGATGTCCACGTGGAACTT  350

seq1  GTGTGGGTACGGATCCTCCCCAGTGACCTTCAGCTGCTGGACGGCTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTACGGATCCTCCCCAGTGACCTTCAGCTGCTGGACGGCTTGAC  400

seq1  TTCGGATCTTGTAGTATTGCTGTTAAAAAAAGAAAAAGAAAAAAGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGATCTTGTAGTATTGCTGTTAAAAAAAGAAAAAGAAAAAAGAGCTA  450

seq1  GTCCTTCTGAAGTGGAACCCTGTCAGGTGTGGCTTCTTCAGCAGAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGAAGTGGAACCCTGTCAGGTGTGGCTTCTTCAGCAGAGTATC  500

seq1  ACA-TTAATTACG-TTCCTTGTCACAATGACAGAATACCTTACA-GGAGT  547
      ||| ||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ACATTTAATTACGTTTCCTTGTCACAATGACAGAATACCTTACAGGGAGT  550

seq1  ATTCTAGTTTAAGAGAATATGGTTACAGCAGGGAAAGCGAGACAGCACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTTAAGAGAATATGGTTACAGCAGGGAAAGCGAGACAGCACAG  600

seq1  TGGCTTGTCCAGGCCTTCAGAGGTTTATGACCGTCATCTCTGCAGATCGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTCCAGGCCTTCAGAGGTTTATGACCGTCATCTCTGCAGATCGT  650

seq1  GCAAGACACACACACATG-TTGGGAAGAATGAAGCTGAACCACAACCCAT  696
      || ||||||||||||||| |||||||||||||||||||||| | ||||||
seq2  GC-AGACACACACACATGTTTGGGAAGAATGAAGCTGAACC-CCACCCAT  698

seq1  TAAGACTCGACAGCAGGGGGCT-GGTGAGATTGGCGGCTGGAGAGATGGC  745
      |||||||| ||||||||||||| ||||||||||||||||||| |||||||
seq2  TAAGACTC-ACAGCAGGGGGCTGGGTGAGATTGGCGGCTGGAAAGATGGC  747

seq1  TCAGACCACTGACT-GCTCTTCCAAAGGTCCTGA-GTTCAAATCTTAGCA  793
      ||||||||| |||| |||||||||| |||||||| |||||| ||||||||
seq2  TCAGACCACGGACTGGCTCTTCCAAGGGTCCTGAGGTTCAATTCTTAGCA  797

seq1  ACCACATGGT-GGCTTACAACCACCCGTAATGAG-ATCTGACGCCCTC-T  840
      ||  |||||| ||||||| ||||||||||||||| ||||||||||||| |
seq2  ACACCATGGTGGGCTTAC-ACCACCCGTAATGAGAATCTGACGCCCTCTT  846

seq1  TCTGGTGTGTCTGAAGATAGCTACAGTGTACTCATACATGAAATAAATAA  890
      ||||||| || || |||||||||| ||||||||   ||||||||||||||
seq2  TCTGGTGGGTTTG-AGATAGCTAC-GTGTACTCTATCATGAAATAAATAA  894

seq1  AATAAACCTTTAAAAAAATGAATG-TAGATTCACAGAATGAATTTAAAAT  939
      |||  |||||| |||||||||||| |||||||||   ||| |||| ||||
seq2  AAT--ACCTTTTAAAAAATGAATGTTAGATTCAC--GATG-ATTTTAAAT  939

seq1  ACAAGGTTCAACAGAATTAAAAAAAAAAAAGAGGTTCACCCAAAATAACA  989
      || ||||   || || |    ||||||||||||||   | |  |||| | 
seq2  AC-AGGT--CACTGATT----AAAAAAAAAGAGGT---CTCCTAATACC-  978

seq1  AAACTTAATTGCTGCAGACAGTCTCTCTTG  1019
       ||||||  |||||||||| ||||| ||||
seq2  -AACTTA--TGCTGCAGAC-GTCTCCCTTG  1004