BAC Information

Click to search

BAC

Clone NameB6Ng01-050L13
Chromosome8 (Build37)
Map Location 55,872,776 - 56,007,793
singlet/doubletdoublet
Overlap genenone
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L13.bB6Ng01-050L13.g
ACCDH874580DH874581
length1,1141,029
definitionDH874580|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L13, 5' end.DH874581|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,006,666 - 56,007,793)(55,872,776 - 55,873,401)
sequence
gaattctcagtactcctactcagggatacaggctgctagcaaatctacag
tgcctgagctctgaccttcccacattgttttctcagccttcctgcttttg
tattgagagtgcatggtaaacttacacagctcagttatgcagacaaggct
tccattatatttctaatccacaatggaagggattaagctatcagcattct
ctcctcacctgtccacatttcccttaacaagaatttaaaacaagttaagg
aaaaaaaaagaaagaaagcagacattatacatttacaataacatggcctg
agaggacctaccatagaaaataataactgtaatataaattagaattataa
ttgccataattactattaaggaaaatccctttattttactgaaactctga
atgttttacactacatgtctctctcaaagatatgtttggataatgaaaca
ctaaggtgaattacttgatttctttgcatcctttatattgcaaaggagat
aaccagcgctgctgtgtccaggctctggtcttcctgctctccctgcttcc
tgtcccttctatgaatctctcccagtttcatgctaactctcatggttcta
cctagtatgtgtccctggctggtgaaggcagggccacagaggcatgtcac
attgtcttgggtgcttatgaacttagccaggtgtctctgttctaataagc
ccacaaatctagtgtttcaccttgggaaaataccaatatgaagacagcat
aggagagtatcatttactgaggcccacttaagtgattaagcatcaaatcg
aaaaatattttcttgcttagccattagcttctatatttacacacacacac
acaaaattgttctactcccttgaaaaagactgccttgggacacagatatt
catctattttattttttttttagtatttacacacaccacccgcacgtgca
atgcacacatgctcacacagctttctatgctgttctgtctgtagtacact
tatatgtcatgcatactatgagagcagacaggcacaactctcagaatctg
agctaaggatcattgtgagctactatgtggtctgacgaagaaggatcctc
tgcaaaagcagaaa
gaattcttttgaaatgtgaataaaataaaaaataagaggaaacaaacaaa
caaacaaacaaccctcaacaaatatgagacaagaaacctctaaagatacc
attgagttcattgtctgttggccatctacttttcgacatgcaatctaccc
ttaggagtagtttgtttccctagtatgttttccatcttgtgatgtgggtc
ttgagtcaaatcagatactggttggttacccccacaaactttgagccatc
attgcactagcatatcttgcagataggataccattatagattaaggggtt
tgtcattgggttggtgtttatatttctttttggtagcaggcagagtttct
ccctgtaccaaagatgctagtgaacattgggtaaaggagctatgtaaggc
accagctgaactcctccattttcaatgagttctagagtccttatattctg
caatggggtcttgccatcagtttgtggagagcaaaataaaaccttagcag
caacctgaattatttgatggttcccgtgggatccttttggccaattagat
gtaacacactcctggtactagaatctttggtgacaaatgatagccacctg
aggatcttccccctttacttggcaatttcatttagatcgtcttcttatat
gtatatattttaggaaacttctactgtatttcattttcacactactcctc
aataacctttactttccctgtattccctcccttactcccttccttccctc
tcctctcttgatcctcctattgtttgttgttttgtttgcttttccaagat
gatagccccactatgtagtcctgggtgtcctggaactgactatgaatact
aatctggctttaaatccagtgacccgctagctggtattaaaggtgtgcac
cccggggcagactctttaaatctagttttgaaagtaaaataaatttactc
ataaaatgttgatagcttctacgacttttttatgactaatacaccattcc
cggtgactgtatacacttattttctagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_56006666_56007793
seq2: B6Ng01-050L13.b_47_1160 (reverse)

seq1  TTTCTGCTCTTGCAGAGGATCCTCTTTCGGTTCCAGGACCCACATAGTAG  50
      |||||||| ||||||||||||||  ||||    |||   |||||||||||
seq2  TTTCTGCTTTTGCAGAGGATCCTTCTTCG---TCAG--ACCACATAGTAG  45

seq1  CTCACAATGATCTCTAGCTCAGATTCTGAGAGTTTTGGTGCCCTGTCTTG  100
      ||||||||||||  |||||||||||||||||||| ||    |||||| ||
seq2  CTCACAATGATCCTTAGCTCAGATTCTGAGAGTTGTG----CCTGTC-TG  90

seq1  CTCTCCATAAGTATGCATAGACATAT-AGTGTACTTACAGACAGACAAGC  149
      |||| ||| ||||||||| ||||||| ||||||| ||||||||||  |||
seq2  CTCT-CAT-AGTATGCAT-GACATATAAGTGTAC-TACAGACAGAACAGC  136

seq1  ATAGAAAGCTTGTGTGAGCATGTGTGCATGTGCACGTGCGTGT-GTGTGT  198
      ||||||||| ||||||||||||||||||| |||||||||| || ||||||
seq2  ATAGAAAGC-TGTGTGAGCATGTGTGCAT-TGCACGTGCGGGTGGTGTGT  184

seq1  GTAAATTACT-AAAAATAAATAAAATAGATG-ATATCTGTTGTCCCAAGG  246
      ||||| |||| ||||| |||||||||||||| ||||||| ||||||||||
seq2  GTAAA-TACTAAAAAAAAAATAAAATAGATGAATATCTG-TGTCCCAAGG  232

seq1  CAGTCTTCTTCAAGGGAGTAGAACATTTTTGTGTGTGTGTGTGTAAATAT  296
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGTCTTTTTCAAGGGAGTAGAACAATTTTGTGTGTGTGTGTGTAAATAT  282

seq1  AGAAGCTAATGGCTAAGCAAGAAAATATTTTTCGATTTGATGCTTAATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAATGGCTAAGCAAGAAAATATTTTTCGATTTGATGCTTAATCA  332

seq1  CTTAAGTGGGCCTCAGTAAATGATACTCTCCTATGCTGTCTTCATATTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGGGCCTCAGTAAATGATACTCTCCTATGCTGTCTTCATATTGG  382

seq1  TATTTTCCCAAGGTGAAACACTAGATTTGTGGGCTTATTAGAACAGAGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCAAGGTGAAACACTAGATTTGTGGGCTTATTAGAACAGAGAC  432

seq1  ACCTGGCTAAGTTCATAAGCACCCAAGACAATGTGACATGCCTCTGTGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTAAGTTCATAAGCACCCAAGACAATGTGACATGCCTCTGTGGC  482

seq1  CCTGCCTTCACCAGCCAGGGACACATACTAGGTAGAACCATGAGAGTTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTCACCAGCCAGGGACACATACTAGGTAGAACCATGAGAGTTAG  532

seq1  CATGAAACTGGGAGAGATTCATAGAAGGGACAGGAAGCAGGGAGAGCAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACTGGGAGAGATTCATAGAAGGGACAGGAAGCAGGGAGAGCAGG  582

seq1  AAGACCAGAGCCTGGACACAGCAGCGCTGGTTATCTCCTTTGCAATATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGAGCCTGGACACAGCAGCGCTGGTTATCTCCTTTGCAATATAA  632

seq1  AGGATGCAAAGAAATCAAGTAATTCACCTTAGTGTTTCATTATCCAAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAAAGAAATCAAGTAATTCACCTTAGTGTTTCATTATCCAAACA  682

seq1  TATCTTTGAGAGAGACATGTAGTGTAAAACATTCAGAGTTTCAGTAAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGAGAGAGACATGTAGTGTAAAACATTCAGAGTTTCAGTAAAAT  732

seq1  AAAGGGATTTTCCTTAATAGTAATTATGGCAATTATAATTCTAATTTATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATTTTCCTTAATAGTAATTATGGCAATTATAATTCTAATTTATA  782

seq1  TTACAGTTATTATTTTCTATGGTAGGTCCTCTCAGGCCATGTTATTGTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTATTATTTTCTATGGTAGGTCCTCTCAGGCCATGTTATTGTAA  832

seq1  ATGTATAATGTCTGCTTTCTTTCTTTTTTTTTCCTTAACTTGTTTTAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAATGTCTGCTTTCTTTCTTTTTTTTTCCTTAACTTGTTTTAAAT  882

seq1  TCTTGTTAAGGGAAATGTGGACAGGTGAGGAGAGAATGCTGATAGCTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAAGGGAAATGTGGACAGGTGAGGAGAGAATGCTGATAGCTTAA  932

seq1  TCCCTTCCATTGTGGATTAGAAATATAATGGAAGCCTTGTCTGCATAACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCATTGTGGATTAGAAATATAATGGAAGCCTTGTCTGCATAACT  982

seq1  GAGCTGTGTAAGTTTACCATGCACTCTCAATACAAAAGCAGGAAGGCTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTAAGTTTACCATGCACTCTCAATACAAAAGCAGGAAGGCTGA  1032

seq1  GAAAACAATGTGGGAAGGTCAGAGCTCAGGCACTGTAGATTTGCTAGCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATGTGGGAAGGTCAGAGCTCAGGCACTGTAGATTTGCTAGCAG  1082

seq1  CCTGTATCCCTGAGTAGGAGTACTGAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  CCTGTATCCCTGAGTAGGAGTACTGAGAATTC  1114

seq1: chr8_55872776_55873401
seq2: B6Ng01-050L13.g_484_1097

seq1  CCATTTTCAATGAGTTCTAGAGTCCTTATATTCTGCAATGGGGTCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCAATGAGTTCTAGAGTCCTTATATTCTGCAATGGGGTCTTGCC  50

seq1  ATCAGTTTGTGGAGAGCAAAATAAAACCTTAGCAGCAACCTGAATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTGTGGAGAGCAAAATAAAACCTTAGCAGCAACCTGAATTATTT  100

seq1  GATGGTTCCCGTGGGATCCTTTTGGCCAATTAGATGTAACACACTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCCCGTGGGATCCTTTTGGCCAATTAGATGTAACACACTCCTGG  150

seq1  TACTAGAATCTTTGGTGACAAATGATAGCCACCTGAGGATCTTCCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAATCTTTGGTGACAAATGATAGCCACCTGAGGATCTTCCCCCTT  200

seq1  TACTTGGCAATTTCATTTAGATCGTCTTCTTATATGTATATATTTTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGCAATTTCATTTAGATCGTCTTCTTATATGTATATATTTTAGGA  250

seq1  AACTTCTACTGTATTTCATTTTCACACTACTCCTCAATAACCTTTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACTGTATTTCATTTTCACACTACTCCTCAATAACCTTTACTTT  300

seq1  CCCTGTATTCCCTCCCTTACTCCCTTCCTTCCCTCTCCTCTCTTGATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATTCCCTCCCTTACTCCCTTCCTTCCCTCTCCTCTCTTGATCCT  350

seq1  CCTATTGTTTGTTTGTTTTTGTTTTGCTTTTCCAAGATGATAG-CTCACT  399
      ||||||||||| |||||||   ||||||||||||||||||||| | ||||
seq2  CCTATTGTTTG-TTGTTTT--GTTTGCTTTTCCAAGATGATAGCCCCACT  397

seq1  ATGTAGTCCTGGGTGTCCTGGAACTGACTATGAATACTAATCTGGCTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCCTGGGTGTCCTGGAACTGACTATGAATACTAATCTGGCTTTA  447

seq1  AATCCAGTGACCCGCTAGCTGGTATTAAAGGTGTGCACCCCGTGCCAGAC  499
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  AATCCAGTGACCCGCTAGCTGGTATTAAAGGTGTGCACCCCGGGGCAGAC  497

seq1  TCTTTAAATCTAGTTTTGAAAGTAAAAATAAATTTACTCATAAAAATGTT  549
      ||||||||||||||||||||||| ||||||||||||||||| |||||| |
seq2  TCTTTAAATCTAGTTTTGAAAGT-AAAATAAATTTACTCAT-AAAATG-T  544

seq1  TGATAGCATCTAAGGACTTTTTAAATGGACTAATAACACCCATTCCC-GT  598
      ||||||| ||| | |||||||| |   ||||||| ||| |||||||| ||
seq2  TGATAGCTTCT-ACGACTTTTTTA--TGACTAAT-ACA-CCATTCCCGGT  589

seq1  GACTGTATTACACTTATTATTCTTAGTA  626
      ||||||| |||||||||| ||| |||||
seq2  GACTGTA-TACACTTATT-TTC-TAGTA  614