BAC Information

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BAC

Clone NameB6Ng01-052F12
Chromosome8 (Build37)
Map Location 6,028,057 - 6,146,045
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC436026, Slc10a2, LOC434275, LOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F12.bB6Ng01-052F12.g
ACCDH875727DH875728
length1751,150
definitionDH875727|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F12, 5' end.DH875728|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,028,057 - 6,028,231)(6,144,875 - 6,146,045)
sequence
gaattcttgaaaggaagctgagaaatctacacaatgtgggaaactcaact
atagatgtttctcacaaaggctttttaaaaatatatctagtaagacatat
tttataaatagagagcaagaaaggagacagtaaaagagagagggagagga
agagggtgagaggaagggggaaggg
gaattcattgaatatagatttatttgggcatggttaagtaacatcaataa
aatcctcagtaaatgcacaaaaatatacattttggggaaaaactagagtt
tggtttttcttgatatcagctgagtagtggatatatgtaatatgacatat
ctttcatacaatgatattcttctgagattaagtaaaagcaagtctttgta
tagaaaaatccactatttgaaggtgtgcttaaattaaattgtaaaattaa
tggtgtttaattcaatttctagattaattgatccatttaagtaaatttct
tttaatatgccatattgaatatgacaaaatatctttaattcgacttcaga
aaagagatttatccaattacaactttcttccattcttcatttgtcctgta
acatcagttttctcatcatgatcagggtgcactactccacagatggatgc
tttcaaagacagttcctgtaacatgcttctcactgcagcagggatgtaaa
gagcttccaatgtaggtcagaatgtaagatgtaagagagatatttgaagt
tttcaattgagaataattaggtttattttcagtgttctctgacctagtct
ggaatctaatgtaataggaaatggttaagtttcatttggccttatttagc
accaataattcattctgtatcctggtagaatacttattaccccaggaaac
ttctagtaacatgtgcattggtaactcaaccacaatataagaatccaaac
tgataagtagcaaagaaagaaagaaagaagaagaagaagaaagaaagaag
aaagaagaaaggaatgaagggaggaagaaaggaaggagaaggaaggaaga
aagaaagaatactaagcaacaattgactatattatttggcttaaaatgtc
agtataattaatactcaaaagtaatacagttactacaactgtcagtacaa
agcttaaatatccctgactagaaagcagttgaattggatattcttgttca
tttctatagtattcgtccaaagagataacttcatctgcatccgtgtaaag
agtcaagcaaacctacattagaagaaggatcctctcagtttgaggctgga
atgaccatggtacactacgttgtttaggcaatttcactctttcctacaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6028057_6028231
seq2: B6Ng01-052F12.b_43_217

seq1  GAATTCTTGAAAGGAAGCTGAGAAATCTACACAATGTGGGAAACTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAGGAAGCTGAGAAATCTACACAATGTGGGAAACTCAACT  50

seq1  ATAGATGTTTCTCACAAAGGCTTTTTAAAAATATATCTAGTAAGACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTTTCTCACAAAGGCTTTTTAAAAATATATCTAGTAAGACATAT  100

seq1  TTTATAAATAGAGAGCAAGAAAGGAGACAGTAAAAGAGAGAGGGAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATAGAGAGCAAGAAAGGAGACAGTAAAAGAGAGAGGGAGAGGA  150

seq1  AGAGGGTGAGAGGAAGGGGGAAGGG  175
      |||||||||||||||||||||||||
seq2  AGAGGGTGAGAGGAAGGGGGAAGGG  175

seq1: chr8_6144875_6146045
seq2: B6Ng01-052F12.g_70_1219 (reverse)

seq1  ATTGTA-GAAAGAGTTGAAATATTGCTAAACAACGTAGTTGGTA-CATGT  48
      |||||| ||||||| |||||| |  ||||||||||||||  ||| |||| 
seq2  ATTGTAGGAAAGAG-TGAAAT-TGCCTAAACAACGTAGT--GTACCATG-  45

seq1  GTCATTTCAGCCTCTAAACTGAGAGGGATCCCTTCTTCTAATGTAGGTTT  98
      |||||| ||||||| ||||||||| |||| ||||||||||||||||||||
seq2  GTCATTCCAGCCTC-AAACTGAGA-GGAT-CCTTCTTCTAATGTAGGTTT  92

seq1  GCTTTGACTTCTGTGACAACGGATGCAGACTGAAGTTATCTCTTTGGACG  148
      || ||||| ||| | || ||||||||||| ||||||||||||||||||||
seq2  GC-TTGAC-TCT-TTAC-ACGGATGCAGA-TGAAGTTATCTCTTTGGACG  137

seq1  AATACTATAGACATTAAACAAGAATATCCAATTCAACTGCTTTCTAGTCA  198
      ||||||||||| | | ||||||||||||||||||||||||||||||||| 
seq2  AATACTATAGA-AATGAACAAGAATATCCAATTCAACTGCTTTCTAGTC-  185

seq1  AGGAATATTTAAGCTTTGTACTGACAGTTGTAGTAACTGTATTACTTTTG  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTTAAGCTTTGTACTGACAGTTGTAGTAACTGTATTACTTTTG  235

seq1  AGTA-TAATTATACTGACATTTTAAGCCAAAATAATATAGTCAATTGTTG  297
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTATTAATTATACTGACATTTTAAGCC-AAATAATATAGTCAATTGTTG  284

seq1  CTTAGTATTCTTTCTTTCTTCCTTCCTTTCTTCCTTCCTTTCTTCCTCCC  347
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CTTAGTATTCTTTCTTTCTTCCTTCCTT--CTCCTTCCTTTCTTCCTCCC  332

seq1  TTCATTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  397
      |||||||||||| ||||||| |||||||||||||   |||||   |||||
seq2  TTCATTCCTTTC-TTCTTTC-TTCTTTCTTTCTT--CTTCTT--CTTCTT  376

seq1  TCTTTCTTTCTTTGCTACTTATCAGTTTGGATTCTTATATTGTGGTTGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTGCTACTTATCAGTTTGGATTCTTATATTGTGGTTGAG  426

seq1  TTACCAATGCACATGTTACTAGAAGTTTCCTGGGGTAATAAGTATTCTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATGCACATGTTACTAGAAGTTTCCTGGGGTAATAAGTATTCTAC  476

seq1  CAGGATACAGAATGAATTATTGGTGCTAAATAAGGCCAAATGAAACTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACAGAATGAATTATTGGTGCTAAATAAGGCCAAATGAAACTTAA  526

seq1  CCATTTCCTATTACATTAGATTCCAGACTAGGTCAGAGAACACTGAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTATTACATTAGATTCCAGACTAGGTCAGAGAACACTGAAAAT  576

seq1  AAACCTAATTATTCTCAATTGAAAACTTCAAATATCTCTCTTACATCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAATTATTCTCAATTGAAAACTTCAAATATCTCTCTTACATCTTA  626

seq1  CATTCTGACCTACATTGGAAGCTCTTTACATCCCTGCTGCAGTGAGAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGACCTACATTGGAAGCTCTTTACATCCCTGCTGCAGTGAGAAGC  676

seq1  ATGTTACAGGAACTGTCTTTGAAAGCATCCATCTGTGGAGTAGTGCACCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAGGAACTGTCTTTGAAAGCATCCATCTGTGGAGTAGTGCACCC  726

seq1  TGATCATGATGAGAAAACTGATGTTACAGGACAAATGAAGAATGGAAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGATGAGAAAACTGATGTTACAGGACAAATGAAGAATGGAAGAA  776

seq1  AGTTGTAATTGGATAAATCTCTTTTCTGAAGTCGAATTAAAGATATTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAATTGGATAAATCTCTTTTCTGAAGTCGAATTAAAGATATTTTG  826

seq1  TCATATTCAATATGGCATATTAAAAGAAATTTACTTAAATGGATCAATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCAATATGGCATATTAAAAGAAATTTACTTAAATGGATCAATTA  876

seq1  ATCTAGAAATTGAATTAAACACCATTAATTTTACAATTTAATTTAAGCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAATTGAATTAAACACCATTAATTTTACAATTTAATTTAAGCAC  926

seq1  ACCTTCAAATAGTGGATTTTTCTATACAAAGACTTGCTTTTACTTAATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAATAGTGGATTTTTCTATACAAAGACTTGCTTTTACTTAATCT  976

seq1  CAGAAGAATATCATTGTATGAAAGATATGTCATATTACATATATCCACTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAATATCATTGTATGAAAGATATGTCATATTACATATATCCACTA  1026

seq1  CTCAGCTGATATCAAGAAAAACCAAACTCTAGTTTTTCCCCAAAATGTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGATATCAAGAAAAACCAAACTCTAGTTTTTCCCCAAAATGTAT  1076

seq1  ATTTTTGTGCATTTACTGAGGATTTTATTGATGTTACTTAACCATGCCCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGCATTTACTGAGGATTTTATTGATGTTACTTAACCATGCCCA  1126

seq1  AATAAATCTATATTCAATGAATTC  1171
      ||||||||||||||||||||||||
seq2  AATAAATCTATATTCAATGAATTC  1150