BAC Information

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BAC

Clone NameB6Ng01-052P20
Chromosome8 (Build37)
Map Location 18,402,809 - 18,419,720
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052P20.bB6Ng01-052P20.g
ACCDH876173DH876174
length1,116256
definitionDH876173|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P20, 5' end.DH876174|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,418,589 - 18,419,720)(18,402,809 - 18,403,064)
sequence
gaattcttatttttcttcctctttttctggctccaaaagaaacatcttgg
ggcaaaatttagtcagaagaagttaaaaatcttaataaaaataaaacccc
caggcagacacaaactatttaaaagacctctttactaggaaactgtctga
gcgccatctcttctctcctgctgcatgtgtcggtggaggacacattctct
tgcaacaccagtgcttgttgagtgccctgcatcccaggaactgtgtgaga
atcataagacaggtgaacacggtgatgaagaagatatgcataatacagag
ataagggagatgcaaaagaagacattttacacaatggtttatagttaact
ctttgagaatctcatgtaatgtattttgaacccattcacacctacaattc
cttttataaccaccttctgcactcttaacctccctacccacccaactttg
agtttatgccccacacctgtaggttacatccttaaggaaagctggctatc
acactatcactcccaaaacctactaaaatatcagtagctcttcagttaga
ggtagaattttgtgcccgtgtgtctgagaagagacatctgagggaaaatg
agagctaagccaggaggaactgagatcccttaggccagatggaggctcat
ggttgctagagtctctgcagagatttgacagtaaggagaaactttgcact
ttgcataggtatcatggaaaggttctctgagggtaaaaccttacccattt
aagccccagcttgtagagacataaattcattggagggaggtggggcttga
actgaaaattctaccacagaagtttcctgctccaaaatggtttcctataa
gtgttttcacaagctccttgttgcaaatacacagaggctgctgcacctct
gggcccaggggccaggctacatcttgagctgccagcagaacttgacagta
ttgtatgtgaggtactgatttttcagcatgctagacccaagagtgagagc
atgtggagtacttgctccaagttctagaagttctgaagaagactgcagca
gtcgatcagacaagagctattggtgtgaaactacaagtgaagcctcagtt
gattccacacactaga
acatttgtccacggctttgttttgaagacagaatgagataatctgtgatt
ccctcctaaggagatgcacaaatgagcgatgcagaagttgcatccttctg
aaacatgctgaggaggatgaagatgcaacactgataaagggttcttctat
gttctctccacggtgagttcagggagtacatagatttagagatgtaaggg
atggagagagggaagaagacagaaaggagaggtggtggaggttgagagga
agaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18418589_18419720
seq2: B6Ng01-052P20.b_43_1158 (reverse)

seq1  TCTAGTGTGTGGATTACAACTGAGGCTTCACCTTTGTAGTTTCACA-CAA  49
      ||||||||||||| | |||||||||||||||  ||||||||||||| |||
seq2  TCTAGTGTGTGGAAT-CAACTGAGGCTTCAC--TTGTAGTTTCACACCAA  47

seq1  TAGCTCTTTGTCTGGATTCGAACCTTGCTGCAGTCTGTCTTCAGAAACCT  99
      |||||| |||||||   ||||    ||||||||||| |||||||||  ||
seq2  TAGCTC-TTGTCTG--ATCGA---CTGCTGCAGTCT-TCTTCAGAA--CT  88

seq1  TCTAGAACTTGGGAGCAAGTACTTCCCACATGCTCCTCACTCTTGGGTCT  149
      |||||||||| ||||||||||||  ||||||||| |||||||||||||||
seq2  TCTAGAACTT-GGAGCAAGTACT--CCACATGCT-CTCACTCTTGGGTCT  134

seq1  AGCATGCCTGAAAAATCAGTACCTCACATACAATACTGTCAAGTTCTGCT  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATG-CTGAAAAATCAGTACCTCACATACAATACTGTCAAGTTCTGCT  183

seq1  GGCAGCTCAAGATGTAGCCTGGCCCCTGGGGCCAGAGGTGCAGCAGCCTC  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCAGCTCAAGATGTAGCCTGGCCCCTGGGCCCAGAGGTGCAGCAGCCTC  233

seq1  TGTGTATTTGCAACAAGGAGCTTGTGAAAACACTTATAGGAAACCATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTGCAACAAGGAGCTTGTGAAAACACTTATAGGAAACCATTTT  283

seq1  GGAGCAGGAAACTTCTGTGGTAGAATTTTCAGTTCAAGCCCCACCTCCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGAAACTTCTGTGGTAGAATTTTCAGTTCAAGCCCCACCTCCCT  333

seq1  CCAATGAATTTATGTCTCTACAAGCTGGGGCTTAAATGGGTAAGGTTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAATTTATGTCTCTACAAGCTGGGGCTTAAATGGGTAAGGTTTTA  383

seq1  CCCTCAGAGAACCTTTCCATGATACCTATGCAAAGTGCAAAGTTTCTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAGAACCTTTCCATGATACCTATGCAAAGTGCAAAGTTTCTCCT  433

seq1  TACTGTCAAATCTCTGCAGAGACTCTAGCAACCATGAGCCTCCATCTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAAATCTCTGCAGAGACTCTAGCAACCATGAGCCTCCATCTGGC  483

seq1  CTAAGGGATCTCAGTTCCTCCTGGCTTAGCTCTCATTTTCCCTCAGATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGATCTCAGTTCCTCCTGGCTTAGCTCTCATTTTCCCTCAGATGT  533

seq1  CTCTTCTCAGACACACGGGCACAAAATTCTACCTCTAACTGAAGAGCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCAGACACACGGGCACAAAATTCTACCTCTAACTGAAGAGCTAC  583

seq1  TGATATTTTAGTAGGTTTTGGGAGTGATAGTGTGATAGCCAGCTTTCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTAGTAGGTTTTGGGAGTGATAGTGTGATAGCCAGCTTTCCTT  633

seq1  AAGGATGTAACCTACAGGTGTGGGGCATAAACTCAAAGTTGGGTGGGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAACCTACAGGTGTGGGGCATAAACTCAAAGTTGGGTGGGTAG  683

seq1  GGAGGTTAAGAGTGCAGAAGGTGGTTATAAAAGGAATTGTAGGTGTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTAAGAGTGCAGAAGGTGGTTATAAAAGGAATTGTAGGTGTGAAT  733

seq1  GGGTTCAAAATACATTACATGAGATTCTCAAAGAGTTAACTATAAACCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAAAATACATTACATGAGATTCTCAAAGAGTTAACTATAAACCAT  783

seq1  TGTGTAAAATGTCTTCTTTTGCATCTCCCTTATCTCTGTATTATGCATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAATGTCTTCTTTTGCATCTCCCTTATCTCTGTATTATGCATAT  833

seq1  CTTCTTCATCACCGTGTTCACCTGTCTTATGATTCTCACACAGTTCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATCACCGTGTTCACCTGTCTTATGATTCTCACACAGTTCCTGG  883

seq1  GATGCAGGGCACTCAACAAGCACTGGTGTTGCAAGAGAATGTGTCCTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGGCACTCAACAAGCACTGGTGTTGCAAGAGAATGTGTCCTCCA  933

seq1  CCGACACATGCAGCAGGAGAGAAGAGATGGCGCTCAGACAGTTTCCTAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACACATGCAGCAGGAGAGAAGAGATGGCGCTCAGACAGTTTCCTAGT  983

seq1  AAAGAGGTCTTTTAAATAGTTTGTGTCTGCCTGGGGGTTTTATTTTTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTCTTTTAAATAGTTTGTGTCTGCCTGGGGGTTTTATTTTTATT  1033

seq1  AAGATTTTTAACTTCTTCTGACTAAATTTTGCCCCAAGATGTTTCTTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTAACTTCTTCTGACTAAATTTTGCCCCAAGATGTTTCTTTTG  1083

seq1  GAGCCAGAAAAAGAGGAAGAAAAATAAGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  GAGCCAGAAAAAGAGGAAGAAAAATAAGAATTC  1116

seq1: chr8_18402809_18403064
seq2: B6Ng01-052P20.g_74_329

seq1  ACATTTGTCCACGGCTTTGTTTTGAAGACAGAATGAGATAATCTGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTCCACGGCTTTGTTTTGAAGACAGAATGAGATAATCTGTGATT  50

seq1  CCCTCCTAAGGAGATGCACAAATGAGCGATGCAGAAGTTGCATCCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTAAGGAGATGCACAAATGAGCGATGCAGAAGTTGCATCCTTCTG  100

seq1  AAACATGCTGAGGAGGATGAAGATGCAACACTGATAAAGGGTTCTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTGAGGAGGATGAAGATGCAACACTGATAAAGGGTTCTTCTAT  150

seq1  GTTCTCTCCACGGTGAGTTCAGGGAGTACATAGATTTAGAGATGTAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCCACGGTGAGTTCAGGGAGTACATAGATTTAGAGATGTAAGGG  200

seq1  ATGGAGAGAGGGAAGAAGACAGAAAGGAGAGGTGGTGGAGGTTGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAGGGAAGAAGACAGAAAGGAGAGGTGGTGGAGGTTGAGAGGA  250

seq1  AGAATA  256
      ||||||
seq2  AGAATA  256