BAC Information

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BAC

Clone NameB6Ng01-053I22
Chromosome11 (Build37)8 (Build37)
Map Location 109,354,523 - 109,354,83840,302,705 - 40,303,818
singlet/doubletsingletsinglet
Overlap geneArsg
Upstream geneCcdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6
Downstream geneWipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053I22.bB6Ng01-053I22.g
ACCDH876569DH876570
length7631,104
definitionDH876569|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I22, 5' end.DH876570|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,354,523 - 109,354,838)(40,302,705 - 40,303,818)
sequence
gaattcctcttttcatcgggatccactatggggagccatggagaaggcct
tcgcctatagggccaccatctactcttggtagaaggtctcattgtgctcc
tagccacagcgccactaagccaagcctgccaccactgtcaaaccaaggat
tctcccggagggaccagctggcttcccccctttttaccccagccctaggc
tagatccagcctatatgcccccaccccattctcaactcttatgtggcacc
cagcagtgcctgggtgtacaaaagcccgagaaccagatggcccctggcct
ccttgcaggactggggaccccgtacctcagactgtacttccctgttccca
gagtgatgtcccaggactgcactacagccccacacctgccctacatgggg
taaacacagtcaaacttcctgcatcctgcctccccatgtggcagacccct
gtcatggagcagacactggaccctaaaaccttacataagccaaataaacc
ccttcatcctcaaaaaaaaaaaaaacaaagaaacaaaaaaacaaaacaaa
aacaaaaaaacaaaaacactattaagtcagacaaaacttagtcttctaaa
gaggtcctgcagcctctgtgcacatattttgctcagctcttccttccagt
tgtcttgttctttcatcatctctaactctggtaaatcagagattcaggaa
gctgaaagtacagttcatcatcatctccctctctctctctctctctctct
ctctctctctctc
gaattctgtgtccctaaactgctgcattttaagtgactcaatattcacag
gtgtagttgtagacataagtactatacttcaagttcttcccaaaccccat
ttactaacaacttagatttcaaccatggtatattctgcagagacgctgat
ttttgattaggttatcttgtaaagacagggttggatttaacccgttgcag
ataagacattttcttcaggaaacattctcactccgtttcctccaaaatat
atccatacatgaagctttactgtcttctaacctatcagtacttagcagat
ataaggtctgtcactcatcagtttccaagaatggaggggaaaatcctcag
gtgagagaacagaacagaagggcaatttgcagggacagagatgtgctacc
aaattcacatgggaaatgcagttttgtaagagtttatttgaagtgcattt
gagtctacccaaatttcattacatctatgcgtatttaaaaaaaaaagtct
tgaataaaagtaagtattcatagtgaagaatgtgatgaaacatctggttg
catctatctggtaagattctggaagcacagaaccaggaccatgcattttc
tgtaaataactgaacaagtcaggtggttgtggattcattaaatacaatgt
ttgaggtgctctgaactcattccatgaattgagaaaagtctacaacaatg
tttccttgataacaaaaagggcagaaaatgtaactatcttccaaagacta
ataaaattgcaactacgataatcacaagttcacaagacagccatcaactt
gaggattactatagtcatttaatgatgttgaaactgccgtgctgtctctt
aaacagttcagtgagtctgatgactgcggtgttcttaactttaagagata
gatttttactaacctttgagagcctgttcaaaaaagaaaaaaaaactcgt
agagagatttgaggagttagtggcttgaactgaaagcagtgaagggactg
gcactcctgtctactttaagctttcacattgaataacagttcttggtgag
aatcttgagtatatgtggaatggaataaagaattagggccttgaacctgc
agca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109354523_109354838
seq2: B6Ng01-053I22.b_587_804 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCCTTCCTAGCTCT  50
      ||||||||||||||||||||||||||||||||||||              
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG--------------  36

seq1  GGGCTTCAGAGAT-AAAAGTAACT-TGCCTTCCCACTCCTGGCACAAGCA  98
              ||||| |  |  |||| | | |||    |||||         
seq2  --------GAGATGATGATGAACTGTACTTTCAGCTTCCTG---------  69

seq1  CAAGGCTTCCTGTGTAACAAGCAATTACTATTCGCTCATCAATAGATGGG  148
       ||   |  |||  | || || | |||      | | || ||        
seq2  -AA---TCTCTGATTTACCAG-AGTTA----GAGATGATGAA--------  102

seq1  CCTTAGAGCCAGGCATCGTGGTGCTCACCTGTACTCTCCGCTTGCTAGAA  198
          ||| | || ||                 |||    |   |  || |
seq2  ----AGAACAAGACA-----------------ACT----GGAAGGAAG-A  126

seq1  GCTGAGTCAGGAAGACTGC----AAGCTTAAGGCCATCTTATCTAAAAAA  244
      |||||| ||  |    |||    | |||  ||| | ||||   || || |
seq2  GCTGAG-CAAAATATGTGCACAGAGGCTGCAGGACCTCTT---TAGAAGA  172

seq1  CTATAGGGTGTGTGGGAGCTGGCTGCAATAGTTTTTAAAATGTCATTTTT  294
      |  || | | |||     ||| ||  |||||| |||      |  |||||
seq2  C--TAAGTTTTGT-----CTGACT-TAATAGTGTTT------TTGTTTTT  208

seq1  TTTTTTTTGTTACTGTTTTTGT  316
      || |||||||            
seq2  TTGTTTTTGT------------  218

seq1: chr8_40302705_40303818
seq2: B6Ng01-053I22.g_68_1171

seq1  GAATTCTGTGTCCCTAAACTGCTGCATTTTAAGTGACTCAATATTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCCCTAAACTGCTGCATTTTAAGTGACTCAATATTCACAG  50

seq1  GTGTAGTTGTAGACATAAGTACTATACTTCAAGTTCTTCCCAAACCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTGTAGACATAAGTACTATACTTCAAGTTCTTCCCAAACCCCAT  100

seq1  TTACTAACAACTTAGATTTCAACCATGGTATATTCTGCAGAGACGCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACAACTTAGATTTCAACCATGGTATATTCTGCAGAGACGCTGAT  150

seq1  TTTTGATTAGGTTATCTTGTAAAGACAGGGTTGGATTTAACCCGTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTAGGTTATCTTGTAAAGACAGGGTTGGATTTAACCCGTTGCAG  200

seq1  ATAAGACATTTTCTTCAGGAAACATTCTCACTCCGTTTCCTCCAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATTTTCTTCAGGAAACATTCTCACTCCGTTTCCTCCAAAATAT  250

seq1  ATCCATACATGAAGCTTTACTGTCTTCTAACCTATCAGTACTTAGCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATACATGAAGCTTTACTGTCTTCTAACCTATCAGTACTTAGCAGAT  300

seq1  ATAAGGTCTGTCACTCATCAGTTTCCAAGAATGGAGGGGAAAATCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCTGTCACTCATCAGTTTCCAAGAATGGAGGGGAAAATCCTCAG  350

seq1  GTGAGAGAACAGAACAGAAGGGCAATTTGCAGGGACAGAGATGTGCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAACAGAACAGAAGGGCAATTTGCAGGGACAGAGATGTGCTACC  400

seq1  AAATTCACATGGGAAATGCAGTTTTGTAAGAGTTTATTTGAAGTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACATGGGAAATGCAGTTTTGTAAGAGTTTATTTGAAGTGCATTT  450

seq1  GAGTCTACCCAAATTTCATTACATCTATGCGTATTTAAAAAAAAAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACCCAAATTTCATTACATCTATGCGTATTTAAAAAAAAAAGTCT  500

seq1  TGAATAAAAGTAAGTATTCATAGTGAAGAATGTGATGAAACATCTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAGTAAGTATTCATAGTGAAGAATGTGATGAAACATCTGGTTG  550

seq1  CATCTATCTGGTAAGATTCTGGAAGCACAGAACCAGGACCATGCATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTGGTAAGATTCTGGAAGCACAGAACCAGGACCATGCATTTTC  600

seq1  TGTAAATAACTGAACAAGTCAGGTGGTTGTGGATTCATTAAATACAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAACTGAACAAGTCAGGTGGTTGTGGATTCATTAAATACAATGT  650

seq1  TTGAGGTGCTCTGAACTCATTCCATGAATTGAGAAAAGTCTACAACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGCTCTGAACTCATTCCATGAATTGAGAAAAGTCTACAACAATG  700

seq1  TTTCCTTGATAACAAAAAGGGCAGAAAATGTAACTATCTTCCAAAGACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGATAACAAAAAGGGCAGAAAATGTAACTATCTTCCAAAGACTA  750

seq1  ATAAAATTGCAACTACGATAATCACAAGTTCACAAGACAGCCATCAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGCAACTACGATAATCACAAGTTCACAAGACAGCCATCAACTT  800

seq1  GAGGATTACTATAGTCATTTAATGATGTTGAAACTGCCGTGCTGTCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTACTATAGTCATTTAATGATGTTGAAACTGCCGTGCTGTCTCTT  850

seq1  AAACAGTTCAGTGAGTCTGATGACTGCGGTGTTCCTTAACTTTTAAGAGA  900
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  AAACAGTTCAGTGAGTCTGATGACTGCGGTGTT-CTTAAC-TTTAAGAGA  898

seq1  TAGATTTTTACTAACCTTTGAGAGCCTGTTTCAAAAAAGAAAAAAAAACT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGATTTTTACTAACCTTTGAGAGCCTG-TTCAAAAAAGAAAAAAAAACT  947

seq1  CGTAGAGAGATTTGAGGAGTTAGTGGCGTGGAACTGAGAGGCAGTGAAGG  1000
      ||||||||||||||||||||||||||| | ||||||| | ||||||||||
seq2  CGTAGAGAGATTTGAGGAGTTAGTGGC-TTGAACTGA-AAGCAGTGAAGG  995

seq1  GACTGGCACTTCCTGTCTTACTTTAAGCTTTCACATTGGAATAACAGTCC  1050
      ||||||||| ||||||| ||||||||||||||||||| |||||||||| |
seq2  GACTGGCAC-TCCTGTC-TACTTTAAGCTTTCACATT-GAATAACAGTTC  1042

seq1  TTGGTGAAGAATCTTGAGTTAATATGT-GAATGGAATAAGGAATTAGGGG  1099
      |||||| ||||||||||||  |||||| ||||||||||| |||||| |||
seq2  TTGGTG-AGAATCTTGAGT--ATATGTGGAATGGAATAAAGAATTA-GGG  1088

seq1  CCTTGAA-CTGCAGCA  1114
      ||||||| ||||||||
seq2  CCTTGAACCTGCAGCA  1104