BAC Information

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BAC

Clone NameB6Ng01-054H09
Chromosome8 (Build37)
Map Location 18,772,368 - 18,869,198
singlet/doubletdoublet
Overlap geneMcph1, Agpat5
Upstream geneLOC665638, LOC100040466, Angpt2
Downstream geneLOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H09.bB6Ng01-054H09.g
ACCDH877197DH877198
length1,1301,121
definitionDH877197|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H09, 5' end.DH877198|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,868,045 - 18,869,198)(18,772,368 - 18,773,503)
sequence
gaattctaaataaaaatactagtaaaagtcgctttaaaaaatgtctgaac
taaggctgtcactcagtagcacacatatgaccccatgttcaatcacgggt
accataaaacaaacacataaacaaaaaaatcagatatagtttcattaaat
ggtgttaagtttgaaataaaagggcaaagacaaagtttacctgagcaaag
tagaacccatacagcggaagccattttaacttgtctttcagtacgtagcg
cacatgtcctagggcatcctgtctggcagccagcatgtccgcaacaatcc
agtcaactgtaaggcagacccaagtcagtacctcacaagtcagctccaac
cttccctcccaggaacaaaaactcatcttcacagcacagtctttgtaaca
tgtcctgagaatctaactatggaggcagaggcagaaggcgcacaggctca
gagtcaacccggtgtacagagcaagtcccaggaacactagggccacatag
caagacctagccttaaaaaagcttttagtttttttaaaaataaagtatga
ttaaaatgcttaaaacaaagccaactacagacacattaaaaaatataccc
cctccccaaaactcaaaaaaaaaaaacaaccaacaaacaaaaaaccctta
aatcaaggaggtgtgtgtttttcctgttttttgtattttttttttcctct
gtgtagccctggctctcctggaactatgtggacaagctggccttgaactc
agtgatccacttacctctgctgggattaaaggcttttctcatttcttaaa
aggccatttatttcaaggataaaacacaaaggtacaaaatacatggggct
gaagagattttgttcagtggttaaggattcagttggctgctttcgcagag
ggcccaggttcttgtacccataagccagctcttgcctctaactcagttcc
aacggatatgagcccttcatgagctccagtgcaccaggcacatgcacagt
gcacaggcatatatgcaggactcaaacttactcaggaaaagaagaacaat
gtttaaagctacaaatactagtacccacccaatctatactgttgaatata
ttattcagtaaaaaaataagaatttctttt
gaattctccgctgtgctctagtaatacagtcaaaggttggtggcacacgc
ctttaatcccagcacttggggagcagaggcaggtggatttctgagttctg
ggccagcctggtctacagaatgatttccaggacagccagggctacacaga
gaaaccctgtctcgaaaaaaaaaaaaaaaaaaaaagtttttttgggtttt
ttgagttgtcaatagaagcttttgaaataactgggaacaaacaagtcatt
ggatagacaggaatgagagaagcggtcatgaaggaacatcaaacccagcc
attaaaatagaataaaagccagaaacccatcccatggcctcttcgattca
caggtggagtgctagggactggaggaatggggtcacaccaccagtgcagt
gtgtatgcctctcctgatgtcactgtgtctgtgtccctgctcccatggct
gcaagccagtggagatgcagaaagggccagactcccctcacagtcccccc
cacccccataggtctcaggtgtaggagcagtgtgtattccttcctccaga
tgttggtgtccagtcaggagctctcctcaccagggctccctggctgctca
gttgctccccctcctcccatgctcctccctagctttcagcggctggcagc
agaggcacatgttcaccctgagggagcattccgaaaggtggcaaataaat
cgtggaaatgaactgcagagcagccctgaggcgtgcagcaccggctcctc
aggaagacaacagccctgctgtgaatggctggacagatgccaccatgctc
tgccctgcaagcttagattaccacccaggtgacagttgtggccactggcc
ctgcatcccagctcaaatttgaaaaaaaaaaaaaatcacagcaggtcgcc
tttgtattaaatctaaaaagtgtagtagtcactgagcattccagaaaggt
gaagagcgggaaggatcgggccatgcctcttctctcttctccggagactg
tctcgtgactactcaagtgtgactctacacctcagtgagaaattagctca
tgctgccttatccacacttatgcatgactatgcacgtgcattaaacttag
catgcatgaatctgaagcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18868045_18869198
seq2: B6Ng01-054H09.b_48_1177 (reverse)

seq1  AAAAGAAATATCTCTTATTTTTTTTACCTGTAATTAAATATTATTCAACA  50
      |||||||||   ||||||||||||   ||| |||  |||| |||||||||
seq2  AAAAGAAAT---TCTTATTTTTTT--ACTG-AAT--AATA-TATTCAACA  41

seq1  GTTATTTAGTATTTGGGTGTTGGGTTACTTAGTATTTTGTAGCTTTTAAA  100
      |   | |||   ||||||    || ||| ||||| |||||||| ||||||
seq2  G---TATAG--ATTGGGT----GGGTAC-TAGTA-TTTGTAGC-TTTAAA  79

seq1  CATTTGTTCTTTCTTTTCCTGAGTATGTTTGAGTCCCTGCATATATGCCT  150
      || |||||| ||||||||||||||| |||||||| |||||||||||||||
seq2  CA-TTGTTC-TTCTTTTCCTGAGTAAGTTTGAGT-CCTGCATATATGCCT  126

seq1  GTGCACTGTGCATGTGCCTGGTGCACTTGGGGCTCATGGAGGGCCTCATA  200
      |||||||||||||||||||||||||| ||| ||||||| |||| ||||||
seq2  GTGCACTGTGCATGTGCCTGGTGCAC-TGGAGCTCATGAAGGG-CTCATA  174

seq1  TCCGTTGGAACTGGAGTTAGAGGC-AGAGCTGGCTTATGGGTACCAG-AC  248
      |||||||||||| ||||||||||| ||||||||||||||||||| || ||
seq2  TCCGTTGGAACT-GAGTTAGAGGCAAGAGCTGGCTTATGGGTACAAGAAC  223

seq1  CTGGGCCCTCTGCGAAAGCAG-CAACTGAATCCTTAACCACTGAACAAAA  297
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGGGCCCTCTGCGAAAGCAGCCAACTGAATCCTTAACCACTGAACAAAA  273

seq1  TCTCTTCAGCCCCATGTATTTTGTACCTTTGTGTTTTATCCTTGAAATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGCCCCATGTATTTTGTACCTTTGTGTTTTATCCTTGAAATAA  323

seq1  ATGGCCTTTTAAGAAATGAGAAAAGCCTTTAATCCCAGCAGAGGTAAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTTTAAGAAATGAGAAAAGCCTTTAATCCCAGCAGAGGTAAGTG  373

seq1  GATCACTGAGTTCAAGGCCAGCTTGTCCACATAGTTCCAGGAGAGCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGAGTTCAAGGCCAGCTTGTCCACATAGTTCCAGGAGAGCCAGG  423

seq1  GCTACACAGAGGAAAAAAAAAATACAAAAAACAGGAAAAACACACACCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGGAAAAAAAAAATACAAAAAACAGGAAAAACACACACCTC  473

seq1  CTTGATTTAAGGGTTTTTTGTTTGTTGGTTGTTTTTTTTTTTTGAGTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTAAGGGTTTTTTGTTTGTTGGTTGTTTTTTTTTTTTGAGTTTT  523

seq1  GGGGAGGGGGTATATTTTTTAATGTGTCTGTAGTTGGCTTTGTTTTAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGGTATATTTTTTAATGTGTCTGTAGTTGGCTTTGTTTTAAGC  573

seq1  ATTTTAATCATACTTTATTTTTAAAAAAACTAAAAGCTTTTTTAAGGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCATACTTTATTTTTAAAAAAACTAAAAGCTTTTTTAAGGCTA  623

seq1  GGTCTTGCTATGTGGCCCTAGTGTTCCTGGGACTTGCTCTGTACACCGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCTATGTGGCCCTAGTGTTCCTGGGACTTGCTCTGTACACCGGG  673

seq1  TTGACTCTGAGCCTGTGCGCCTTCTGCCTCTGCCTCCATAGTTAGATTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTGAGCCTGTGCGCCTTCTGCCTCTGCCTCCATAGTTAGATTCT  723

seq1  CAGGACATGTTACAAAGACTGTGCTGTGAAGATGAGTTTTTGTTCCTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGTTACAAAGACTGTGCTGTGAAGATGAGTTTTTGTTCCTGGG  773

seq1  AGGGAAGGTTGGAGCTGACTTGTGAGGTACTGACTTGGGTCTGCCTTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGTTGGAGCTGACTTGTGAGGTACTGACTTGGGTCTGCCTTACA  823

seq1  GTTGACTGGATTGTTGCGGACATGCTGGCTGCCAGACAGGATGCCCTAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTGGATTGTTGCGGACATGCTGGCTGCCAGACAGGATGCCCTAGG  873

seq1  ACATGTGCGCTACGTACTGAAAGACAAGTTAAAATGGCTTCCGCTGTATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCGCTACGTACTGAAAGACAAGTTAAAATGGCTTCCGCTGTATG  923

seq1  GGTTCTACTTTGCTCAGGTAAACTTTGTCTTTGCCCTTTTATTTCAAACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTACTTTGCTCAGGTAAACTTTGTCTTTGCCCTTTTATTTCAAACT  973

seq1  TAACACCATTTAATGAAACTATATCTGATTTTTTTGTTTATGTGTTTGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCATTTAATGAAACTATATCTGATTTTTTTGTTTATGTGTTTGTT  1023

seq1  TTATGGTACCCGTGATTGAACATGGGGTCATATGTGTGCTACTGAGTGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTACCCGTGATTGAACATGGGGTCATATGTGTGCTACTGAGTGAC  1073

seq1  AGCCTTAGTTCAGACATTTTTTAAAGCGACTTTTACTAGTATTTTTATTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGTTCAGACATTTTTTAAAGCGACTTTTACTAGTATTTTTATTT  1123

seq1  AGAATTC  1154
      |||||||
seq2  AGAATTC  1130

seq1: chr8_18772368_18773503
seq2: B6Ng01-054H09.g_67_1187

seq1  GAATTCTCCGCTGTGCTCTAGTAATACAGTCAAAGGTTGGTGGCACACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCTGTGCTCTAGTAATACAGTCAAAGGTTGGTGGCACACGC  50

seq1  CTTTAATCCCAGCACTTGGGGAGCAGAGGCAGGTGGATTTCTGAGTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGGAGCAGAGGCAGGTGGATTTCTGAGTTCTG  100

seq1  GGCCAGCCTGGTCTACAGAATGATTTCCAGGACAGCCAGGGCTACACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAATGATTTCCAGGACAGCCAGGGCTACACAGA  150

seq1  GAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAGTTTTTTTGGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAGTTTTTTTGGGTTTT  200

seq1  TTGAGTTGTCAATAGAAGCTTTTGAAATAACTGGGAACAAACAAGTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGTCAATAGAAGCTTTTGAAATAACTGGGAACAAACAAGTCATT  250

seq1  GGATAGACAGGAATGAGAGAAGCGGTCATGAAGGAACATCAAACCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGACAGGAATGAGAGAAGCGGTCATGAAGGAACATCAAACCCAGCC  300

seq1  ATTAAAATAGAATAAAAGCCAGAAACCCATCCCATGGCCTCTTCGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGAATAAAAGCCAGAAACCCATCCCATGGCCTCTTCGATTCA  350

seq1  CAGGTGGAGTGCTAGGGACTGGAGGAATGGGGTCACACCACCAGTGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGAGTGCTAGGGACTGGAGGAATGGGGTCACACCACCAGTGCAGT  400

seq1  GTGTATGCCTCTCCTGATGTCACTGTGTCTGTGTCCCTGCTCCCATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCCTCTCCTGATGTCACTGTGTCTGTGTCCCTGCTCCCATGGCT  450

seq1  GCAAGCCAGTGGAGATGCAGAAAGGGCCAGACTCCCCTCACAGTCCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTGGAGATGCAGAAAGGGCCAGACTCCCCTCACAGTCCCCCC  500

seq1  CACCCCCATAGGTCTCAGGTGTAGGAGCAGTGTGTATTCCTTCCTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCATAGGTCTCAGGTGTAGGAGCAGTGTGTATTCCTTCCTCCAGA  550

seq1  TGTTGGTGTCCAGTCAGGAGCTCTCCTCACCAGGGCTCCCTGGCTGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGTCCAGTCAGGAGCTCTCCTCACCAGGGCTCCCTGGCTGCTCA  600

seq1  GTTGCTCCCCCTCCTCCCATGCTCCTCCCTAGCTTTCAGCGGCTGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCCCCTCCTCCCATGCTCCTCCCTAGCTTTCAGCGGCTGGCAGC  650

seq1  AGAGGCACATGTTCACCCTGAGGGAGCATTCCGAAAGGTGGCAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACATGTTCACCCTGAGGGAGCATTCCGAAAGGTGGCAAATAAAT  700

seq1  CGTGGAAATGAACTGCAGAGCAGCCCTGAGGCGTGCAGCACCGGCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAATGAACTGCAGAGCAGCCCTGAGGCGTGCAGCACCGGCTCCTC  750

seq1  AGGAAGACAACAGCCCTGCTGTGAATGGCTGGACAGATGCCACCATGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAACAGCCCTGCTGTGAATGGCTGGACAGATGCCACCATGCTC  800

seq1  TGCCCTGCAAGCTTAGATTACCACCCAGGTGACAGTTGTGGCCACTGG-C  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCCCTGCAAGCTTAGATTACCACCCAGGTGACAGTTGTGGCCACTGGCC  850

seq1  CTGCATCCCAGCTCAAATTTGAAAAAAAAAAAAAATCACAGCAGGTCGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCCAGCTCAAATTTGAAAAAAAAAAAAAATCACAGCAGGTCGCC  900

seq1  TTTGTATTAAAATCTTAAAAAGTGTAGTAGTCACTGAGCATTCCAGAAAG  949
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TTTGTATT-AAATC-TAAAAAGTGTAGTAGTCACTGAGCATTCCAGAAAG  948

seq1  GTGAAGAAGCGGGAAGGATCGGGCCATGCCTC-TCTCTCTTCTCCCGGAG  998
      |||||| ||||||||||||||||||||||||| |||||||||| ||||||
seq2  GTGAAG-AGCGGGAAGGATCGGGCCATGCCTCTTCTCTCTTCT-CCGGAG  996

seq1  ACATGTCTCGTGACTACCTCAAGGTGTGACCTCTACACCTCAGTGGAAGG  1048
      || ||||||||||||| ||||| |||||| |||||||||||||||  || 
seq2  AC-TGTCTCGTGACTA-CTCAA-GTGTGA-CTCTACACCTCAGTG--AG-  1039

seq1  AACATTAGCTCATGCCTGCCTTATCCACACTTATGCATGACTATGCACGT  1098
       | ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -AAATTAGCTCATG-CTGCCTTATCCACACTTATGCATGACTATGCACGT  1087

seq1  GCCATTAAAACTAAGCATGCAATGTATCCTGAAGCAGG  1136
      | |||| ||||| ||||||| ||| || ||||||||||
seq2  G-CATT-AAACTTAGCATGC-ATGAAT-CTGAAGCAGG  1121