BAC Information

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BAC

Clone NameB6Ng01-055A20
Chromosome5 (Build37)8 (Build37)
Map Location 90,452,486 - 90,452,81671,999,139 - 72,000,295
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A20.bB6Ng01-055A20.g
ACCDH877622DH877623
length5131,141
definitionDH877622|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A20, 5' end.DH877623|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,452,486 - 90,452,816)(71,999,139 - 72,000,295)
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttgattt
tctggagtccagcttcttgaattctttgtatatattggatattagtctcc
tattgaatttaggattggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgccttatagaagctttgtaattttat
gaggtcccatttgtcaattctcaatcttacagcacaatccattgctgttc
tgttcaggaatttttcccatgtgcccatatcttcgaggctttcccaattt
atcctctataagttttagtgtctctggttttatgtggagttccttgatct
acttagacttgagctttgtacaaggatataagaatggatcaattcacatt
cttctacatgctaactgccagttgagccagcaccatttgttgaaaatgct
gtatttctttccactggatggttttaggtcctttatcaaagatcaagtga
ccataggtgtgtg
gaattctatgcttccgaggaaagggacggaaaataggtggtttatttcct
cgcacctataaggaaaattggcaatgttacttttgatttaaagtttcact
gattttattcattttatcacctgtctgctaatgtcagaatcttgatttac
agtccccaaaatgtttctgtattcagaccaccttcatcactaaggacact
atctgatattcagcaacctctgcttcctttctgcatgatgagtaaaaggc
ccagcgtatctagaaatctttggtggggacctgcttagtgttatgctttt
atcttctgctctttgctacctcacatcatcattctctacaaaatggaaag
acataaaaagaaaggacaaaatgtgtcctctcctgtctttatgacctgaa
ttttgaattccagccagatgaagttaatagggcagtgaggtgctttgaga
acaaaaggaacctctctcttctgcactacactaacccttccccaatgaat
gatcttctacagttgtccattagatacctgggatatcagaacagtggggc
tgaattgtgaaatgcatgaataaagtatgtcactacctatagcagagggg
aattgctgagttccatttatggattctatatatgccttccaaaatctcac
ctgttaactctatgtcaaagtaacttttatgcactaggtgtaattgtaat
ctttgatgctagctacctccatctgagtgataacctaggcctagtcctgg
aagcttctcgcctctgtgaaactttagcataggcctagaatattgtcagc
ctctcatacttactgctgaataagcacaccgttatttctgggttcttttt
catctctggctgactggttcactcaggtgttctagctcaaagctgctccc
atgctaactgattcagcctggattctctcttggcctctgatgttttttgt
tctgcttgactcaactaactagcaatttttctatcttctgactcttcata
ttctctggtcattctgcctcacccgtgtctgctggttctctctcaatgaa
tctctctaaactttctgggttaaatgcttcctctctctgttctctctgcc
tatctctcaggtagctccttttcctttctctctgagagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90452486_90452816
seq2: B6Ng01-055A20.b_224_553 (reverse)

seq1  CACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTATAACCATCCAG  50
      |||||||||||||||||||||||||||| || ||| ||| ||||||||||
seq2  CACACACCTATGGTCACTTGATCTTTGATAAAGGACCTAAAACCATCCAG  50

seq1  TGGAAA-AAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGT  99
      |||||| ||| ||||||||||||||||||||||||||| |||||||||||
seq2  TGGAAAGAAATACAGCATTTTCAACAAATGGTGCTGGCTCAACTGGCAGT  100

seq1  TATCATGTAGAAGAATGCAAATTGATCCATTTCTATCTCCTTGTACTAAG  149
      || ||||||||||||||  ||||||||||||  ||| ||||||||| |||
seq2  TAGCATGTAGAAGAATGTGAATTGATCCATTCTTATATCCTTGTACAAAG  150

seq1  GTCAAATCTAAGTGGATTAAGGAACGCCACATAAAACCAGAGACACTGAA  199
       |||| ||||||| ||| ||||||| ||||||||||||||||||||| ||
seq2  CTCAAGTCTAAGTAGATCAAGGAACTCCACATAAAACCAGAGACACTAAA  200

seq1  ACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGG  249
      |||||||||||| ||| |  || ||||||||||||||||||| ||| |||
seq2  ACTTATAGAGGATAAATT--GGGAAAGCCTCGAAGATATGGGCACATGGG  248

seq1  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATC  299
      ||||||||||||| ||||||||||||| ||||||||||||||  ||||| 
seq2  AAAAATTCCTGAACAGAACAGCAATGGATTGTGCTGTAAGATTGAGAATT  298

seq1  GATAAATGGGACCTCATAAAATTGCAAAGCTT  331
      || |||||||||||||||||||| ||||||||
seq2  GACAAATGGGACCTCATAAAATTACAAAGCTT  330

seq1: chr8_71999139_72000295
seq2: B6Ng01-055A20.g_68_1208

seq1  GAATTCTATGCTTCCGAGGAAAGGGACGGAAAATAGGTGGTTTATTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCTTCCGAGGAAAGGGACGGAAAATAGGTGGTTTATTTCCT  50

seq1  CGCACCTATAAGGAAAATTGGCAATGTTACTTTTGATTTAAAGTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTATAAGGAAAATTGGCAATGTTACTTTTGATTTAAAGTTTCACT  100

seq1  GATTTTATTCATTTTATCACCTGTCTGCTAATGTCAGAATCTTGATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTCATTTTATCACCTGTCTGCTAATGTCAGAATCTTGATTTAC  150

seq1  AGTCCCCAAAATGTTTCTGTATTCAGACCACCTTCATCACTAAGGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAAAATGTTTCTGTATTCAGACCACCTTCATCACTAAGGACACT  200

seq1  ATCTGATATTCAGCAACCTCTGCTTCCTTTCTGCATGATGAGTAAAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTCAGCAACCTCTGCTTCCTTTCTGCATGATGAGTAAAAGGC  250

seq1  CCAGCGTATCTAGAAATCTTTGGTGGGGACCTGCTTAGTGTTATGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTATCTAGAAATCTTTGGTGGGGACCTGCTTAGTGTTATGCTTTT  300

seq1  ATCTTCTGCTCTTTGCTACCTCACATCATCATTCTCTACAAAATGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGCTCTTTGCTACCTCACATCATCATTCTCTACAAAATGGAAAG  350

seq1  ACATAAAAAGAAAGGACAAAATGTGTCCTCTCCTGTCTTTATGACCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAAGAAAGGACAAAATGTGTCCTCTCCTGTCTTTATGACCTGAA  400

seq1  TTTTGAATTCCAGCCAGATGAAGTTAATAGGGCAGTGAGGTGCTTTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTCCAGCCAGATGAAGTTAATAGGGCAGTGAGGTGCTTTGAGA  450

seq1  ACAAAAGGAACCTCTCTCTTCTGCACTACACTAACCCTTCCCCAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAACCTCTCTCTTCTGCACTACACTAACCCTTCCCCAATGAAT  500

seq1  GATCTTCTACAGTTGTCCATTAGATACCTGGGATATCAGAACAGTGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTACAGTTGTCCATTAGATACCTGGGATATCAGAACAGTGGGGC  550

seq1  TGAATTGTGAAATGCATGAATAAAGTATGTCACTACCTATAGCAGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTGAAATGCATGAATAAAGTATGTCACTACCTATAGCAGAGGGG  600

seq1  AATTGCTGAGTTCCATTTATGGATTCTATATATGCCTTCCAAAATCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGAGTTCCATTTATGGATTCTATATATGCCTTCCAAAATCTCAC  650

seq1  CTGTTAACTCTATGTCAAAGTAACTTTTATGCACTAGGTGTAATTGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACTCTATGTCAAAGTAACTTTTATGCACTAGGTGTAATTGTAAT  700

seq1  CTTTGATGCTAGCTACCTCCATCTGAGTGATAACCTAGGCCTAGTCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGCTAGCTACCTCCATCTGAGTGATAACCTAGGCCTAGTCCTGG  750

seq1  AAGCTTCTCGCCTCTGTGAAAC-TTAGCATAGGCCTAGAATATTGTCAGC  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGCTTCTCGCCTCTGTGAAACTTTAGCATAGGCCTAGAATATTGTCAGC  800

seq1  CTCTCATACTTACTGCTGAATAAGCACACCGTTATTTCT-GGTTCTTTTT  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTCATACTTACTGCTGAATAAGCACACCGTTATTTCTGGGTTCTTTTT  850

seq1  CATCTCTGGCTGACTGGTTCAACTCAGGTGTTCTAGCTCAAAGCTGCTCC  898
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  CATCTCTGGCTGACTGGTTC-ACTCAGGTGTTCTAGCTCAAAGCTGCT-C  898

seq1  CCATGCTAACTGATTCAGCCTGGATTCTCTCTTGGCCTCTGATGTTTTTT  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCATGCTAACTGATTCAGCCTGGATTCTCTCTTGGCCTCTGATG-TTTTT  947

seq1  TGTTCTGCTTGACCTCAAACTAACTAGCAATTTTTTCCTAATCTTCTGAC  998
      |||||||||||| ||| ||||||||||||||||||  || ||||||||||
seq2  TGTTCTGCTTGA-CTC-AACTAACTAGCAATTTTT--CT-ATCTTCTGAC  992

seq1  TCCTTCATATTCTCTGGTTCATTCTGCCTTCACCCGTGTCTTGCTGGTTC  1048
      | ||||||||||||||| |||||||||| ||||||||||| |||||||||
seq2  T-CTTCATATTCTCTGG-TCATTCTGCC-TCACCCGTGTC-TGCTGGTTC  1038

seq1  TCTCTTCAATGAATCTCTCTAAAACTTTCTGGGTAAAAATGCCTCCTCTC  1098
      |||| ||||||||||||||| |||||||||||||  |||||| |||||||
seq2  TCTC-TCAATGAATCTCTCT-AAACTTTCTGGGT-TAAATGCTTCCTCTC  1085

seq1  TCTGTTTCTCTCTGCACTACCTCTCAAGTAGCTTCCCTTTCCTTTCTTCT  1148
      |||| |||||||||| ||| |||||| ||||| ||| ||||||||||   
seq2  TCTG-TTCTCTCTGC-CTATCTCTCAGGTAGC-TCCTTTTCCTTTCTCTC  1132

seq1  TGAGAGAGT  1157
      |||||||||
seq2  TGAGAGAGT  1141