BAC Information

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BAC

Clone NameB6Ng01-055I19
Chromosome8 (Build37)
Map Location 17,250,849 - 17,373,481
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055I19.bB6Ng01-055I19.g
ACCDH877964DH877965
length1,13385
definitionDH877964|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I19, 5' end.DH877965|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,372,328 - 17,373,481)(17,250,849 - 17,250,933)
sequence
gaattctcaaggggaaaatttgcataacatttatttaagagtagaaaagt
gatgtcattggcaattaaacattctctacatttgtgctccttagcttgat
caattctataaagccattattatttaggccacagtcttgaataaatcatg
gatttatattataaaaaaaatcactaagaagttcaaataattttccttgt
gctataaatgttagaccacttgattagggtacctcatggtatatgagaga
ccaagaattcgtaagtcttactcttgcatgaattattcagcttgtgaaca
acctgttattcctgtgctagtgtttagttcagagtaacatctgagttgat
tttaagccatcacaactctccctctgaaagtgttggtcacaagaggcttg
actgaccattgttaggaatgatgcattgtttctgaatacaaactttagct
ttttaacacgcttatagtatgggagttgacaggttaaaatattgtgcttg
agtagatgctatttgtggctgattgttctaattttcttcatccagcactg
tatcaaatcattaagtattttcaattttcccctaatgctcccacattcac
aagcttcccacattaccatactacccctgatgatttatttctaatcacac
tgaaagcacatattcaacgtgatagctgaattatattaatttgatgacaa
acaaaacaatgcaatttaaaatattgattgcaaaagcattagcttttcat
aaataagccctgtaattccattgattttaagtatgattaaattgcttgtt
ttgattcagaaattatgctctgatcatataagaaaactgagaaagtggga
aattgcaatcttaagttgaaaagtaaaccaagcttcaatataataagcaa
taatgtcacacatgttgtaaagagctggatcattctgcaatgcctggaaa
gcccctttcctaggtgatgagttttactgctgctatgcaaacatatactg
tgctatgacatgctgtggatgagtcccatgggaccgacatttacatttga
gtattggagtttccttgtatataaatgcagaacataagaatgtctaagct
tataaacactttggtgtgtacctgacttatcag
tcttaactggtaagaatgaaggagtttagtgtggtagtgtgtgtgtgtgt
ttgtgtgtgtgtgtgagagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17372328_17373481
seq2: B6Ng01-055I19.b_48_1180 (reverse)

seq1  CTGATAAGTTCCAGGTTTACACAACCAAAGTGTTTATTAAGCTTTTAGAC  50
      |||||||||  ||||  ||||| ||||||||||||| |||||  ||||||
seq2  CTGATAAGT--CAGG--TACAC-ACCAAAGTGTTTA-TAAGC--TTAGAC  42

seq1  ATTTCTTATGGTCTGCAATTTTTATATACAAAGGGAAACT-CAATACCTC  99
      | |||||||| ||||||   |||||||||||  ||||||| ||||| |||
seq2  A-TTCTTATGTTCTGCA---TTTATATACAA--GGAAACTCCAATA-CTC  85

seq1  AAATGTAAATGTCGGTCCCATGGGAACTCATCCCACAAGCATTGTCATAG  149
      |||||||||||||||||||||||| |||||| |||| |||| ||||||||
seq2  AAATGTAAATGTCGGTCCCATGGG-ACTCAT-CCAC-AGCA-TGTCATAG  131

seq1  CACAGTATATGTTTGCATAGCAGCAGTAAAAACTTCATCACCTAGGAAAG  199
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  CACAGTATATGTTTGCATAGCAGCAGTAAAA--CTCATCACCTAGGAAAG  179

seq1  GGGCTTTCCAGGCATTGCAGAATGATCCAGCTCTTTACAACATGTGTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCCAGGCATTGCAGAATGATCCAGCTCTTTACAACATGTGTGAC  229

seq1  ATTATTGCTTTATTATATTGAAGCTTGGTTTACTTTTCAACTTAAGATTG  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGC-TTATTATATTGAAGCTTGGTTTACTTTTCAACTTAAGATTG  278

seq1  CAATTTCCCACTTTCTCAGTTTTCTTATATGATCAGAGCATAATTTCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCCACTTTCTCAGTTTTCTTATATGATCAGAGCATAATTTCTGA  328

seq1  ATCAAAACAAGCAATTTAATCATACTTAAAATCAATGGAATTACAGGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACAAGCAATTTAATCATACTTAAAATCAATGGAATTACAGGGCT  378

seq1  TATTTATGAAAAGCTAATGCTTTTGCAATCAATATTTTAAATTGCATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAAAAGCTAATGCTTTTGCAATCAATATTTTAAATTGCATTGT  428

seq1  TTTGTTTGTCATCAAATTAATATAATTCAGCTATCACGTTGAATATGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTCATCAAATTAATATAATTCAGCTATCACGTTGAATATGTGC  478

seq1  TTTCAGTGTGATTAGAAATAAATCATCAGGGGTAGTATGGTAATGTGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTGATTAGAAATAAATCATCAGGGGTAGTATGGTAATGTGGGA  528

seq1  AGCTTGTGAATGTGGGAGCATTAGGGGAAAATTGAAAATACTTAATGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGAATGTGGGAGCATTAGGGGAAAATTGAAAATACTTAATGATT  578

seq1  TGATACAGTGCTGGATGAAGAAAATTAGAACAATCAGCCACAAATAGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGTGCTGGATGAAGAAAATTAGAACAATCAGCCACAAATAGCAT  628

seq1  CTACTCAAGCACAATATTTTAACCTGTCAACTCCCATACTATAAGCGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAAGCACAATATTTTAACCTGTCAACTCCCATACTATAAGCGTGT  678

seq1  TAAAAAGCTAAAGTTTGTATTCAGAAACAATGCATCATTCCTAACAATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTAAAGTTTGTATTCAGAAACAATGCATCATTCCTAACAATGG  728

seq1  TCAGTCAAGCCTCTTGTGACCAACACTTTCAGAGGGAGAGTTGTGATGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAAGCCTCTTGTGACCAACACTTTCAGAGGGAGAGTTGTGATGGC  778

seq1  TTAAAATCAACTCAGATGTTACTCTGAACTAAACACTAGCACAGGAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCAACTCAGATGTTACTCTGAACTAAACACTAGCACAGGAATAA  828

seq1  CAGGTTGTTCACAAGCTGAATAATTCATGCAAGAGTAAGACTTACGAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTTCACAAGCTGAATAATTCATGCAAGAGTAAGACTTACGAATT  878

seq1  CTTGGTCTCTCATATACCATGAGGTACCCTAATCAAGTGGTCTAACATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTCTCATATACCATGAGGTACCCTAATCAAGTGGTCTAACATTT  928

seq1  ATAGCACAAGGAAAATTATTTGAACTTCTTAGTGATTTTTTTTATAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAAGGAAAATTATTTGAACTTCTTAGTGATTTTTTTTATAATAT  978

seq1  AAATCCATGATTTATTCAAGACTGTGGCCTAAATAATAATGGCTTTATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATGATTTATTCAAGACTGTGGCCTAAATAATAATGGCTTTATAG  1028

seq1  AATTGATCAAGCTAAGGAGCACAAATGTAGAGAATGTTTAATTGCCAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCAAGCTAAGGAGCACAAATGTAGAGAATGTTTAATTGCCAATG  1078

seq1  ACATCACTTTTCTACTCTTAAATAAATGTTATGCAAATTTTCCCCTTGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTTTTCTACTCTTAAATAAATGTTATGCAAATTTTCCCCTTGAG  1128

seq1  AATTC  1154
      |||||
seq2  AATTC  1133

seq1: chr8_17250849_17250933
seq2: B6Ng01-055I19.g_76_160

seq1  TCTTAACTGGTAAGAATGAAGGAGTTTAGTGTGGTAGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGGTAAGAATGAAGGAGTTTAGTGTGGTAGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAG  85
       ||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAG  85