BAC Information

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BAC

Clone NameB6Ng01-055K04
Chromosome8 (Build37)
Map Location 23,520,222 - 23,662,136
singlet/doubletdoublet
Overlap geneMrps31, AI316807, Slc20a2
Upstream geneLOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006
Downstream geneLOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055K04.bB6Ng01-055K04.g
ACCDH878025DH878026
length1,0841,055
definitionDH878025|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K04, 5' end.DH878026|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,520,222 - 23,521,318)(23,661,098 - 23,662,136)
sequence
gaattccacacccctaagccccttaccccataaaaacccctagcttctga
acctcatggccgacatccattatctcctgtgtaggctgcatgttggtccg
gagctccgtcattaaactacctcatgtaactacatcagggtggtctattc
atgattctttgggtgcccgctgaatctggaattgagtgggggtttcccca
ctaggttctatcagtgtcaacactaagacatgtagaagatagctttgatg
catctttatgttggaggaaaatggcataaaataagttttaatttaatgtt
tctgatattggaggaatatacttggagttataaactactgtgtgttgttg
ctcctgttcttacaaagatatatttggccagtacagagaaatgcaatata
tttgattataaatgccttctgccttgtaattaatatagtatattatatat
tagatctaacctcagtgataaatgcattttgaagcttgaaaagagttgta
ataaaattgtctgtaccgttgcaaaaaaaaaaaaaaatccctgagaaaat
aacactagctggtctgaattcaatgggtccatgcaggtactcagtttcca
ttcagagattcatcaggtgaaccggatctgtcttggatccccatatcgtg
gcgctataattgtccatgttaaaaacaaacaaacagaaaccctggtactc
ttatcctaaatggaatgagagatattttattctggagccattttgagaga
ctgtggctcagatacacagatcttgattaacccaagttcccacattcaaa
catggaagtagtttcattaaatttttatagttttacagaacaaggtaaat
tataaatcaaggttaaagtacatcggtgggttatatcagaggagtagata
cagcagttgggggaagcttttctaataggtctataggcctaagattcaaa
gggtagtccaacagagtggcaggactgggtgtccgggttggggaggtgct
agaaccagccaaatagatataattatttctagacctgcacattccaatct
ctctaagtactacggtctaatcagccgatcagtc
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttattgcttacatcttcaggagccagagtgcaagaagcaag
agagagcaagaagcaagagagagcaagaagcaagagagagagaaaacgaa
accccgtccctattaaggagaattatccttcgcctcggacgtgtcactcc
ctgattggctgcagcccatcggccgagttgacgtcacggggaaggcagag
cacatggagtgaagaaccaccctcggcacatgcgcagattatttgtttac
cacttagaacacagctgtcagcgccatcttgtaacggcgaatgtgggcgc
ggctcccaacaggaaaggccttatacaagtttgtttaaaggacattcccc
cctcaaatgtaatactttctcaaaatgtcaatttacagactcacaaccca
gaaaaccctcccaacaggagccagtattgcaatgagtagcaattagggtg
ggggctgcaggtggtccagtaacaggactgctacttagcacttcagtctt
tgtagctcagctatgagctgtatctagtttcttttctgtccctaggacag
cagataccgttcagaaatatctatatagaacttaaacatgtatgctcaca
catgaacgcctatacatacatagacatgaatgaataccttatcctggctc
taattttttcaaagattgtgtgtgtggtgtgtgcttgcacacatacacca
catgcagtcttcacacatttgagtatagttgcctgtaaaggttagaggtg
ttggatacttctggagctggaatacaggcatgtgcagctagttgtaaact
gacactatcttttacgtaaacttgtggccagtgttagctggaaggaggaa
gcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23520222_23521318
seq2: B6Ng01-055K04.b_45_1128

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTCTGA  50

seq1  ACCTCATGGCCGACATCCATTATCTCCTGTGTAGGCTGCATGTTGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGGCCGACATCCATTATCTCCTGTGTAGGCTGCATGTTGGTCCG  100

seq1  GAGCTCCGTCATTAAACTACCTCATGTAACTACATCAGGGTGGTCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTCATTAAACTACCTCATGTAACTACATCAGGGTGGTCTATTC  150

seq1  ATGATTCTTTGGGTGCCCGCTGAATCTGGAATTGAGTGGGGGTTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTTGGGTGCCCGCTGAATCTGGAATTGAGTGGGGGTTTCCCCA  200

seq1  CTAGGTTCTATCAGTGTCAACACTAAGACATGTAGAAGATAGCTTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCTATCAGTGTCAACACTAAGACATGTAGAAGATAGCTTTGATG  250

seq1  CATCTTTATGTTGGAGGAAAATGGCATAAAATAAGTTTTAATTTAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATGTTGGAGGAAAATGGCATAAAATAAGTTTTAATTTAATGTT  300

seq1  TCTGATATTGGAGGAATATACTTGGAGTTATAAACTACTGTGTGTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATTGGAGGAATATACTTGGAGTTATAAACTACTGTGTGTTGTTG  350

seq1  CTCCTGTTCTTACAAAGATATATTTGGCCAGTACAGAGAAATGCAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCTTACAAAGATATATTTGGCCAGTACAGAGAAATGCAATATA  400

seq1  TTTGATTATAAATGCCTTCTGCCTTGTAATTAATATAGTATATTATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATAAATGCCTTCTGCCTTGTAATTAATATAGTATATTATATAT  450

seq1  TAGATCTAACCTCAGTGATAAATGCATTTTGAAGCTTGAAAAGAGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTAACCTCAGTGATAAATGCATTTTGAAGCTTGAAAAGAGTTGTA  500

seq1  ATAAAATTGTCTGTACCGTTGCAAAAAAAAAAAAAAATCCCTGAGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGTCTGTACCGTTGCAAAAAAAAAAAAAAATCCCTGAGAAAAT  550

seq1  AACACTAGCTGGTCTGAATTCAATGGGTCCATGCAGGTACTCAGTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAGCTGGTCTGAATTCAATGGGTCCATGCAGGTACTCAGTTTCCA  600

seq1  TTCAGAGATTCATCAGGTGAACCGGATCTGTCTTGGATCCCCATATCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATTCATCAGGTGAACCGGATCTGTCTTGGATCCCCATATCGTG  650

seq1  GCGCTATAATTGTCCATGTTAAAAACAAACAAACAGAAACCCTGGTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTATAATTGTCCATGTTAAAAACAAACAAACAGAAACCCTGGTACTC  700

seq1  TTATCCTAAATGGAATGAGAGATATTTTATTCTGGAGCCATTTTGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAAATGGAATGAGAGATATTTTATTCTGGAGCCATTTTGAGAGA  750

seq1  CTGTGGCTCAGATACACAGATCTTGATTAACCCAAGTTCCCACATTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCAGATACACAGATCTTGATTAACCCAAGTTCCCACATTCAAA  800

seq1  CATGGAAGTAGTTTCATTAAATTTTTATAGTTTTACAGAACAAGGTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGTAGTTTCATTAAATTTTTATAGTTTTACAGAACAAGGTAAAT  850

seq1  TATAAATCAAGGTTAAAGTACATCGGTGGG-TATATCAGAGGAGTAGATA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATAAATCAAGGTTAAAGTACATCGGTGGGTTATATCAGAGGAGTAGATA  900

seq1  CAGCAAGTTGGGGAAGCTTTTCTAATAGGTCTATAGGCCTAAGATTCAAA  949
      |||||  | |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGGGGGAAGCTTTTCTAATAGGTCTATAGGCCTAAGATTCAAA  950

seq1  GGGTTAGTTCCAACAGAGGTGGCAAGGACTGGTTGTCCGGGTTGGGGAGG  999
      ||| ||| ||||||||| ||||| |||||||| |||||||||||||||||
seq2  GGG-TAG-TCCAACAGA-GTGGC-AGGACTGGGTGTCCGGGTTGGGGAGG  996

seq1  TGCTAGAACCAGCCCAAAATA-AGATAATTAAATTAATTTCTAGACCTGC  1048
      ||||||||||||||  ||||| | ||||||      ||||||||||||||
seq2  TGCTAGAACCAGCC--AAATAGATATAATT------ATTTCTAGACCTGC  1038

seq1  AACATTCCAATCTCTCTAAAGTACTACGGTTCTAATCAGCCGATCAGTC  1097
       |||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  -ACATTCCAATCTCTCT-AAGTACTACGG-TCTAATCAGCCGATCAGTC  1084

seq1: chr8_23661098_23662136
seq2: B6Ng01-055K04.g_80_1117 (reverse)

seq1  GCTTCCCTCCTTCCAGCTAACACTTGTGTCACAAGTTTACGTAAAAGATA  50
      |||| |||||||||||||||||||   | |||||||||||||||||||||
seq2  GCTT-CCTCCTTCCAGCTAACACT--GGCCACAAGTTTACGTAAAAGATA  47

seq1  GTGTCAAGTTTACAACTAGCTGGCACATGCCTGTAATTCCAGCT-CAGGA  99
      ||||| ||||||||||||||| |||||||||||| ||||||||| ||| |
seq2  GTGTC-AGTTTACAACTAGCT-GCACATGCCTGT-ATTCCAGCTCCAGAA  94

seq1  GTATCCAACACCTCTGACCTTTACAGGCAACTATACTCAAATGTGTG-AG  148
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  GTATCCAACACCTCTAACCTTTACAGGCAACTATACTCAAATGTGTGAAG  144

seq1  ACTGCATGT-GTGTATGTGTGCAAGCACACA-CACACACACAATCTTTG-  195
      ||||||||| ||||||||||||||||||||| ||||||||||||||||| 
seq2  ACTGCATGTGGTGTATGTGTGCAAGCACACACCACACACACAATCTTTGA  194

seq1  AAAAATTAGAGCCAGGATAAGGTATTCATTCATGTCTATGTATGTATAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGAGCCAGGATAAGGTATTCATTCATGTCTATGTATGTATAGG  244

seq1  CGTTCATGTGTGAGCATACATGTTTAAGTTCTATATAGATATTTCTGAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATGTGTGAGCATACATGTTTAAGTTCTATATAGATATTTCTGAAC  294

seq1  GGTATCTGCTGTCCTAGGGACAGAAAAGAAACTAGATACAGCTCATAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGCTGTCCTAGGGACAGAAAAGAAACTAGATACAGCTCATAGCT  344

seq1  GAGCTACAAAGACTGAAGTGCTAAGTAGCAGTCCTGTTACTGGACCACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACAAAGACTGAAGTGCTAAGTAGCAGTCCTGTTACTGGACCACCT  394

seq1  GCAGCCCCCACCCTAATTGCTACTCATTGCAATACTGGCTCCTGTTGGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCCACCCTAATTGCTACTCATTGCAATACTGGCTCCTGTTGGGA  444

seq1  GGGTTTTCTGGGTTGTGAGTCTGTAAATTGACATTTTGAGAAAGTATTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCTGGGTTGTGAGTCTGTAAATTGACATTTTGAGAAAGTATTAC  494

seq1  ATTTGAGGGGGGAATGTCCTTTAAACAAACTTGTATAAGGCCTTTCCTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGGGGGAATGTCCTTTAAACAAACTTGTATAAGGCCTTTCCTGT  544

seq1  TGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGT  594

seq1  TCTAAGTGGTAAACAAATAATCTGCGCATGTGCCGAGGGTGGTTCTTCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGGTAAACAAATAATCTGCGCATGTGCCGAGGGTGGTTCTTCAC  644

seq1  TCCATGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAG  694

seq1  CCAATCAGGGAGTGACACGTCCGAGGCGAAGGATAATTCTCCTTAATAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGGGAGTGACACGTCCGAGGCGAAGGATAATTCTCCTTAATAGG  744

seq1  GACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCTCTCTCTTGCTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCTCTCTCTTGCTTCT  794

seq1  TGCTCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAA  844

seq1  GCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTG  894

seq1  AGAACGCGTCTAATAACAATTGGTGCCGAATTCCGGGACGAGAAAAAACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCGTCTAATAACAATTGGTGCCGAATTCCGGGACGAGAAAAAACT  944

seq1  CGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTC  994

seq1  GCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTC  1038