BAC Information

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BAC

Clone NameB6Ng01-055O19
Chromosome8 (Build37)
Map Location 111,192,945 - 111,287,473
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744, LOC668038
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055O19.bB6Ng01-055O19.g
ACCDH878238DH878239
length1,1271,093
definitionDH878238|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O19, 5' end.DH878239|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,286,348 - 111,287,473)(111,192,945 - 111,194,045)
sequence
gaattctaaatatgctagtcctcttctggtgaacgctcagtttgtaagtt
tatcagtttataagcaggttaacgaccataactaatggccaagagaataa
ccttaacaatacgctatagtaaacgttacttaaaacttacaaatgcctcc
cttctggaattttccatctagtgtttttaggccatgggtgagctggggta
accaaactgtggagggtgaagtagaagataaaggggttctcagatttcag
cccagtgtctttttcatatttattctctggagtaccaagcacatggagta
ccaagccatggtctagcatgggctacaggacaatcgggtgagtgcgacat
gccctgtgtttgcttgagcaacgtaactaacacccacctttacttcctta
gggatgaggcaaaagcagttttgtacagtttcacctagagagcccactca
aaaaacatacatcaaatagcagggaccgaacagactccaagacacaacaa
aaacaatgccccgaggtatcccattctcagcccgggtaaaactgactttt
ctaatagtcagccacagagtcaccatccatctaagcaccatgtcccaggc
tcctctctgtatctatctggctctgtgctaagcatcatctctaaggggaa
gccttctccttcttccttctctcctccttccttcaggcttcctgggaagg
gtcgtatgaagggttatcagcctctgtgacctcttcagtcatcaagggcc
ttctggctttcccatcccccagcgaagacccgtaccagagcgtgctctca
gcctctgcccattaaagctttctctgtgtccagctatcacgggagggttg
ttgagtgagaggacctctggttgacctctgctgacaggctcagagccctc
tctgtccactgatctaacgtcaggcagggtaattagccaccaccgcagta
attgcagcttctactgggcttgaccaggatgcaaaaattcccttggaggg
tctttgtcagagatccccctccccaccccccgctgcattcctctaaccca
aacagatggcttctattctgctcacagtcaagaggaaaggaccaaccaca
tgcttgaagggaggcctacacttttca
gaattcctccgaggggtgggggagtggaataccaagacctcctaggggat
aatggcagactgtacaacccaggataggttgcacatgcaacctgccttgc
tcccttcctagctccatcctcctctatgttcacctctcaaaatatcttca
gacttcggtgttaagaacccggaaggctagtgtgcgtcaaccataaaata
aaaaaataaaaaataaaaaaataaaaaaaaatctctgacaataaaaaaat
tactattcaaagaaaagtattattttagggtgacattatttttcagagcc
gcagttttcatttgttattacatgtaggagttctgcgaacacacagataa
gagggcacaatagatatttgacagtgtggttctcagaacatttgcatatc
caagagattatttcaacaagtatacttagactgaccctattaaccattca
caatattttgtcttgaatccaattcacactctatagacatgtccaattcg
tatttcatctcttacgctattttcccctttcagactttgtatgaggaaat
aaatccataacatcaaatttcgtgacaacatctgctccggctgacatgat
ttgaaagggaatttcactcatcccaggttatgctgtctcttaattggctc
tttggctctacctgagaaacagccagtttgatcaagccttgtgttgaaag
agcaagttactgatgcagaattcacagccagcactggtcttagcaatgca
caggggtggctggaagagccccctgaagccatgagacaacagtaaggctg
gagaggaattcccaggcaaacatggcttgcaactctagtccagaccagac
ctggtaagcaagccaaagaacatccaagagcaaggtagctcagagtgtgt
attgtactatgagtgaccttttaaaggaaaaacagcaagggtcaaatgta
gtagagagtgactaggtgttacagtgaagccttcaattcttagtactcag
aggcaagaggctggaggatcttgtgagtttgaggcagcctgattacatag
agggctccaggacaccaggactacataatggaggccatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111286348_111287473
seq2: B6Ng01-055O19.b_46_1172 (reverse)

seq1  TGAAAAGTGCTGGCCTCCC-TCAGCAATGTTGCTGAGTCCTTCCTTTTTG  49
      |||||||||  |||||||| |||   |||| | || |||||| | | |||
seq2  TGAAAAGTGTAGGCCTCCCTTCAAGCATGTGGTTG-GTCCTTTCCTCTTG  49

seq1  CCTGTGAGCAG-ATAGATG-CATCTGTGTGGGTTAGAGGGATGCAGCGGG  97
       |||||||||| ||||| | ||||||| ||||||||||| ||||||| ||
seq2  ACTGTGAGCAGAATAGAAGCCATCTGTTTGGGTTAGAGGAATGCAGC-GG  98

seq1  GGGGGGGGGGGGGGGATCTCTGACAAGGCCCCTCC-AGGGGATTTTTGCA  146
      |||| |||| |||||||||||||||| | |||||| |||| |||||||||
seq2  GGGGTGGGGAGGGGGATCTCTGACAAAGACCCTCCAAGGGAATTTTTGCA  148

seq1  TCCTTGGTCCAGCCCAGTTAGAAGCTGCAATTACTGC-GTGGTGGCTAAT  195
      ||| ||||| ||||||| ||||||||||||||||||| ||||||||||||
seq2  TCC-TGGTCAAGCCCAG-TAGAAGCTGCAATTACTGCGGTGGTGGCTAAT  196

seq1  TACCCTGCCTGACGTTAGATCAGTGGACAGAGAGGGCTCTGAGCCTGTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCCTGACGTTAGATCAGTGGACAGAGAGGGCTCTGAGCCTGTCA  246

seq1  GCAGAGGTCAACCAGAGGTCCTCTCACTCAACAACCCTCCCGTGATAGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTCAACCAGAGGTCCTCTCACTCAACAACCCTCCCGTGATAGCT  296

seq1  GGACACAGAGAAAGCTTTAATGGGCAGAGGCTGAGAGCACGCTCTGGTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGAGAAAGCTTTAATGGGCAGAGGCTGAGAGCACGCTCTGGTAC  346

seq1  GGGTCTTCGCTGGGGGATGGGAAAGCCAGAAGGCCCTTGATGACTGAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCGCTGGGGGATGGGAAAGCCAGAAGGCCCTTGATGACTGAAGA  396

seq1  GGTCACAGAGGCTGATAACCCTTCATACGACCCTTCCCAGGAAGCCTGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGAGGCTGATAACCCTTCATACGACCCTTCCCAGGAAGCCTGAA  446

seq1  GGAAGGAGGAGAGAAGGAAGAAGGAGAAGGCTTCCCCTTAGAGATGATGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGAGAGAAGGAAGAAGGAGAAGGCTTCCCCTTAGAGATGATGC  496

seq1  TTAGCACAGAGCCAGATAGATACAGAGAGGAGCCTGGGACATGGTGCTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACAGAGCCAGATAGATACAGAGAGGAGCCTGGGACATGGTGCTTA  546

seq1  GATGGATGGTGACTCTGTGGCTGACTATTAGAAAAGTCAGTTTTACCCGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGTGACTCTGTGGCTGACTATTAGAAAAGTCAGTTTTACCCGG  596

seq1  GCTGAGAATGGGATACCTCGGGGCATTGTTTTTGTTGTGTCTTGGAGTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATGGGATACCTCGGGGCATTGTTTTTGTTGTGTCTTGGAGTCT  646

seq1  GTTCGGTCCCTGCTATTTGATGTATGTTTTTTGAGTGGGCTCTCTAGGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGTCCCTGCTATTTGATGTATGTTTTTTGAGTGGGCTCTCTAGGTG  696

seq1  AAACTGTACAAAACTGCTTTTGCCTCATCCCTAAGGAAGTAAAGGTGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACAAAACTGCTTTTGCCTCATCCCTAAGGAAGTAAAGGTGGGT  746

seq1  GTTAGTTACGTTGCTCAAGCAAACACAGGGCATGTCGCACTCACCCGATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTACGTTGCTCAAGCAAACACAGGGCATGTCGCACTCACCCGATT  796

seq1  GTCCTGTAGCCCATGCTAGACCATGGCTTGGTACTCCATGTGCTTGGTAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAGCCCATGCTAGACCATGGCTTGGTACTCCATGTGCTTGGTAC  846

seq1  TCCAGAGAATAAATATGAAAAAGACACTGGGCTGAAATCTGAGAACCCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAATAAATATGAAAAAGACACTGGGCTGAAATCTGAGAACCCCT  896

seq1  TTATCTTCTACTTCACCCTCCACAGTTTGGTTACCCCAGCTCACCCATGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTACTTCACCCTCCACAGTTTGGTTACCCCAGCTCACCCATGG  946

seq1  CCTAAAAACACTAGATGGAAAATTCCAGAAGGGAGGCATTTGTAAGTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACACTAGATGGAAAATTCCAGAAGGGAGGCATTTGTAAGTTTT  996

seq1  AAGTAACGTTTACTATAGCGTATTGTTAAGGTTATTCTCTTGGCCATTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACGTTTACTATAGCGTATTGTTAAGGTTATTCTCTTGGCCATTAG  1046

seq1  TTATGGTCGTTAACCTGCTTATAAACTGATAAACTTACAAACTGAGCGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCGTTAACCTGCTTATAAACTGATAAACTTACAAACTGAGCGTT  1096

seq1  CACCAGAAGAGGACTAGCATATTTAGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGGACTAGCATATTTAGAATTC  1127

seq1: chr8_111192945_111194045
seq2: B6Ng01-055O19.g_70_1162

seq1  GAATTCCTCCGAGGGGTGGGGGAGTGGAATACCAAGACCTCCTAGGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCGAGGGGTGGGGGAGTGGAATACCAAGACCTCCTAGGGGAT  50

seq1  AATGGCAGACTGTACAACCCAGGATAGGTTGCACATGCAACCTGCCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGACTGTACAACCCAGGATAGGTTGCACATGCAACCTGCCTTGC  100

seq1  TCCCTTCCTAGCTCCATCCTCCTCTATGTTCACCTCTCAAAATATCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTAGCTCCATCCTCCTCTATGTTCACCTCTCAAAATATCTTCA  150

seq1  GACTTCGGTGTTAAGAACCCGGAAGGCTAGTGTGCGTCAACCATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGGTGTTAAGAACCCGGAAGGCTAGTGTGCGTCAACCATAAAATA  200

seq1  AAAAAATAAAAAATAAAAAAATAAAAAAAAATCTCTGACAATAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAAATAAAAAAATAAAAAAAAATCTCTGACAATAAAAAAAT  250

seq1  TACTATTCAAAGAAAAGTATTATTTTAGGGTGACATTATTTTTCAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCAAAGAAAAGTATTATTTTAGGGTGACATTATTTTTCAGAGCC  300

seq1  GCAGTTTTCATTTGTTATTACATGTAGGAGTTCTGCGAACACACAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTCATTTGTTATTACATGTAGGAGTTCTGCGAACACACAGATAA  350

seq1  GAGGGCACAATAGATATTTGACAGTGTGGTTCTCAGAACATTTGCATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACAATAGATATTTGACAGTGTGGTTCTCAGAACATTTGCATATC  400

seq1  CAAGAGATTATTTCAACAAGTATACTTAGACTGACCCTATTAACCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATTATTTCAACAAGTATACTTAGACTGACCCTATTAACCATTCA  450

seq1  CAATATTTTGTCTTGAATCCAATTCACACTCTATAGACATGTCCAATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTGTCTTGAATCCAATTCACACTCTATAGACATGTCCAATTCG  500

seq1  TATTTCATCTCTTACGCTATTTTCCCCTTTCAGACTTTGTATGAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCTCTTACGCTATTTTCCCCTTTCAGACTTTGTATGAGGAAAT  550

seq1  AAATCCATAACATCAAATTTCGTGACAACATCTGCTCCGGCTGACATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATAACATCAAATTTCGTGACAACATCTGCTCCGGCTGACATGAT  600

seq1  TTGAAAGGGAATTTCACTCATCCCAGGTTATGCTGTCTCTTAATTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGGAATTTCACTCATCCCAGGTTATGCTGTCTCTTAATTGGCTC  650

seq1  TTTGGCTCTACCTGAGAAACAGCCAGTTTGATCAAGCCTTGTGTTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTACCTGAGAAACAGCCAGTTTGATCAAGCCTTGTGTTGAAAG  700

seq1  AGCAAGTTACTGATGCAGAATTCACAGCCAGCACTGGTCTTAGCAATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTACTGATGCAGAATTCACAGCCAGCACTGGTCTTAGCAATGCA  750

seq1  CAGGGGTGGCTGGAAGAGCCCCCTGAAGCCATGAGACAACAGTAAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGGCTGGAAGAGCCCCCTGAAGCCATGAGACAACAGTAAGGCTG  800

seq1  GAGAGGAATTCCCAGGCAAACATGGCTTGCAACTCTAGTCCAGACCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAATTCCCAGGCAAACATGGCTTGCAACTCTAGTCCAGACCAGAC  850

seq1  CTGGTAAGCAAGCCAAAAGAACATCCAAGAGCAAGGTAGCTCAGAGTGTG  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGCAAGCC-AAAGAACATCCAAGAGCAAGGTAGCTCAGAGTGTG  899

seq1  TAATGTACTATGAGTGACCTTTTAAAGGAAAAAACAAGCAAGGGTCAAAA  950
      || ||||||||||||||||||||||||||||||   |||||||||| |||
seq2  TATTGTACTATGAGTGACCTTTTAAAGGAAAAA--CAGCAAGGGTC-AAA  946

seq1  TGTAGTAAGAGAGTGACTAGGTGTTACAGTGAAGGCCTTCAA-TCTTAGT  999
      |||||| |||||||||||||||||||||||||| |||||||| |||||||
seq2  TGTAGT-AGAGAGTGACTAGGTGTTACAGTGAA-GCCTTCAATTCTTAGT  994

seq1  ACTCAGGAGGC-AGAGGCTGGAGGATCTCTGTGAGTTTGAGGCCAGCCTG  1048
      ||||| ||||| |||||||||||||||| ||||||||||||| |||||||
seq2  ACTCA-GAGGCAAGAGGCTGGAGGATCT-TGTGAGTTTGAGG-CAGCCTG  1041

seq1  ATTTACATAGAGGGCTCCAGGACAACCAGGACTACATAAT-GAGGTCATG  1097
      | ||||||||||||||||||||| |||||||||||||||| |||| ||||
seq2  A-TTACATAGAGGGCTCCAGGAC-ACCAGGACTACATAATGGAGGCCATG  1089

seq1  TTTT  1101
      ||||
seq2  TTTT  1093