BAC Information

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BAC

Clone NameB6Ng01-056M11
Chromosome8 (Build37)
Map Location 23,746,236 - 23,855,678
singlet/doubletdoublet
Overlap genePolb, Ikbkb
Upstream geneDefcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4
Downstream genePlat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M11.bB6Ng01-056M11.g
ACCDH878835DH878836
length1,047627
definitionDH878835|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M11, 5' end.DH878836|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,746,236 - 23,747,305)(23,855,052 - 23,855,678)
sequence
gaattctcagcagccatgaagatctggatacgagagcgggccatcactat
tctgtcctcaagggaggatgggcttacaagaccccacctctccctgagga
tttacaggttgctagtgaagagaagctgaagagggatcatgtaattcctc
cttaggatctacatgatattaatggtggtgaaaggggactctcttttctt
tagtggtttagacactgctcagtggcccaggcatgtataaatgaccctcc
ccgagtccggggctcaggaaatcaccattgatctactttaccatgatgca
ctttgtctttctcagtcattgccttgcacctcagctaacaggcgttcctc
tcagtcatgtgacacgggaaagtgcacatggagaaaaacaaacccaaatg
aagtcaccagaagaaaggcaagccaaggaaaaacgtgagattttgattgt
cattagctttcctgctctcttatgcagagagacttatctgtttttaatat
atttgccaccttttttttttttttgagatacggtctgactctgtggcctg
gtgtgacctgaaattcactacgtagtccgggcagggcttgaactcatggc
aaccttcctgcttcaacctgagtgctgggttaacatctcaggccaaaggc
cacagaactctgacagttgagcagagtggattttataaagtctctgcaag
tgccctttttgtaggctcccagcacaaggttttccccagtgtgtccttgt
catgaacctaactaaatcccctttctcccttctgtaaccgatgtaacaga
ttactaatcagcttggcgatgctttcttattttcttttccttccctcttt
tttcgtttttttttttttttgaggatgggttttcccacctggaacctcat
taggcatttcgaacctcactcattaaaagtcttctgagtcagagatatga
aaccactggtattttaggaaagatttacttcgagcttgttatattaatag
ttttaagagcaaatcttgctatttatttggtgatcaaattttacaag
gaattcctgtcttacacagctatgcctattctgagccgtgtttcgtaatt
cctttgccaagccttttgagggttgagaataaggtaaggagacttcccca
ggccacacagtcggtaaagtggcaagcaaccgtgaggaagtagaaatatg
tgaaccctcggatctgctcagtgtgccccaggaaggagtacagtccccac
caccaggcctttcccaccgctcctcttgccacaccaggcacagattctgt
acttccagccatggcagatcagtttcagagtcaaacactgctgctcaggt
ctgcagccactgacaggatgatagctcccagggtggcctgaagtgagatg
tgtgctgcaggttccctgtgtgtgaaataggatccatacatactttgcag
agtggctttgagaattagaagaatgtgtgttaagcctgcatatggtctgc
cgtgcacatacaggaggctcaaaggttaatagttatcaagcaggatgtga
tggcacacaccaggaatcctggggtggggcaggaagagttcaaagctaac
gaggctacatatgtgtgtgtgtataatattcatatgtgagtatatgtata
tttgtatatatataatatttgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23746236_23747305
seq2: B6Ng01-056M11.b_46_1092

seq1  GAATTCTCAGCAGCCATGAAGATCTGGATACGAGAGCGGGCCATCACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGCCATGAAGATCTGGATACGAGAGCGGGCCATCACTAT  50

seq1  TCTGTCCTCAAGGGAGGATGGGCTTACAAGACCCCACCTCTCCCTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCAAGGGAGGATGGGCTTACAAGACCCCACCTCTCCCTGAGGA  100

seq1  TTTACAGGTTGCTAGTGAAGAGAAGCTGAAGAGGGATCATGTAATTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTTGCTAGTGAAGAGAAGCTGAAGAGGGATCATGTAATTCCTC  150

seq1  CTTAGGATCTACATGATATTAATGGTGGTGAAAGGGGACTCTCTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATCTACATGATATTAATGGTGGTGAAAGGGGACTCTCTTTTCTT  200

seq1  TAGTGGTTTAGACACTGCTCAGTGGCCCAGGCATGTATAAATGACCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTTAGACACTGCTCAGTGGCCCAGGCATGTATAAATGACCCTCC  250

seq1  CCGAGTCCGGGGCTCAGGAAATCACCATTGATCTACTTTACCATGATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCCGGGGCTCAGGAAATCACCATTGATCTACTTTACCATGATGCA  300

seq1  CTTTGTCTTTCTCAGTCATTGCCTTGCACCTCAGCTAACAGGCGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTTCTCAGTCATTGCCTTGCACCTCAGCTAACAGGCGTTCCTC  350

seq1  TCAGTCATGTGACACGGGAAAGTGCACATGGAGAAAAACAAACCCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATGTGACACGGGAAAGTGCACATGGAGAAAAACAAACCCAAATG  400

seq1  AAGTCACCAGAAGAAAGGCAAGCCAAGGAAAAACGTGAGATTTTGATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCAGAAGAAAGGCAAGCCAAGGAAAAACGTGAGATTTTGATTGT  450

seq1  CATTAGCTTTCCTGCTCTCTTATGCAGAGAGACTTATCTGTTTTTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTTCCTGCTCTCTTATGCAGAGAGACTTATCTGTTTTTAATAT  500

seq1  ATTTGCCACCTTTTTTTTTTTTTTGAGATACGGTCTGACTCTGTGGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCACCTTTTTTTTTTTTTTGAGATACGGTCTGACTCTGTGGCCTG  550

seq1  GTGTGACCTGAAATTCACTACGTAGTCCGGGCAGGGCTTGAACTCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCTGAAATTCACTACGTAGTCCGGGCAGGGCTTGAACTCATGGC  600

seq1  AACCTTCCTGCTTCAACCTGAGTGCTGGGTTAACATCTCAGGCCAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCTGCTTCAACCTGAGTGCTGGGTTAACATCTCAGGCCAAAGGC  650

seq1  CACAGAACTCTGACAGTTGAGCAGAGTGGATTTTATAAAGTCTCTGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACTCTGACAGTTGAGCAGAGTGGATTTTATAAAGTCTCTGCAAG  700

seq1  TGCCC-TTTTGTAGGCTCCCAGCACAAGGTTTTCCCCAGTGTGTCC-TGT  748
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCCTTTTTGTAGGCTCCCAGCACAAGGTTTTCCCCAGTGTGTCCTTGT  750

seq1  CATGAACCTAACTAAATCCCCTTTCTCCCTTCTGTAACCGATGTAACAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCTAACTAAATCCCCTTTCTCCCTTCTGTAACCGATGTAACAGA  800

seq1  TTACTAATCAGGCTTGGCGATGCTTTTCTTATTTTTCTTTTCCTTCCTTT  848
      |||||||||| |||||||||||| ||||||| ||||||||||||||| | 
seq2  TTACTAATCA-GCTTGGCGATGC-TTTCTTA-TTTTCTTTTCCTTCCCT-  846

seq1  CTTTTTTTCTTTTTTTTTTTTTTTTTGAGATGGGTTTTCCCACCTGGAA-  897
        ||||||| |||||||||||||||   ||||||||||||||||||||| 
seq2  -CTTTTTTCGTTTTTTTTTTTTTTTGAGGATGGGTTTTCCCACCTGGAAC  895

seq1  CTCATTAGGCATTTCGAACCTCACTCATTAAAAGTCTTCTGAGTCAGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCATTAGGCATTTCGAACCTCACTCATTAAAAGTCTTCTGAGTCAGAG-  944

seq1  ATATGAAACCACTTGATATTTTAGGAAAGAATTTACTTCGAGCCTGTTAT  997
      |||||||||||| || ||||||||||||| ||||||||||||| ||||| 
seq2  ATATGAAACCAC-TGGTATTTTAGGAAAG-ATTTACTTCGAGCTTGTTA-  991

seq1  TATTAATAGTTTTAAAGAGCAAATTCTGCCTAATTATTTTGGTGATTCAA  1047
      ||||||||||||| ||||||||| |||  ||| ||| |||||||| ||||
seq2  TATTAATAGTTTT-AAGAGCAAA-TCTTGCTATTTA-TTTGGTGA-TCAA  1037

seq1  ATTATTAACAAAGTGTTTACAAG  1070
      ||             ||||||||
seq2  AT-------------TTTACAAG  1047

seq1: chr8_23855052_23855678
seq2: B6Ng01-056M11.g_70_696 (reverse)

seq1  TACACACAAATATTATATATATACAAATATACATATACTCACATATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAAATATTATATATATACAAATATACATATACTCACATATGAAT  50

seq1  ATTATACACACACACATATGTAGCCTCGTTAGCTTTGAACTCTTCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACACACACACATATGTAGCCTCGTTAGCTTTGAACTCTTCCTGCC  100

seq1  CCACCCCAGGATTCCTGGTGTGTGCCATCACATCCTGCTTGATAACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGGATTCCTGGTGTGTGCCATCACATCCTGCTTGATAACTATT  150

seq1  AACCTTTGAGCCTCCTGTATGTGCACGGCAGACCATATGCAGGCTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGAGCCTCCTGTATGTGCACGGCAGACCATATGCAGGCTTAACA  200

seq1  CACATTCTTCTAATTCTCAAAGCCACTCTGCAAAGTATGTATGGATCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTCTAATTCTCAAAGCCACTCTGCAAAGTATGTATGGATCCTA  250

seq1  TTTCACACACAGGGAACCTGCAGCACACATCTCACTTCAGGCCACCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACACAGGGAACCTGCAGCACACATCTCACTTCAGGCCACCCTGG  300

seq1  GAGCTATCATCCTGTCAGTGGCTGCAGACCTGAGCAGCAGTGTTTGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCATCCTGTCAGTGGCTGCAGACCTGAGCAGCAGTGTTTGACTC  350

seq1  TGAAACTGATCTGCCATGGCTGGAAGTACAGAATCTGTGCCTGGTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGATCTGCCATGGCTGGAAGTACAGAATCTGTGCCTGGTGTGGC  400

seq1  AAGAGGAGCGGTGGGAAAGGCCTGGTGGTGGGGACTGTACTCCTTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCGGTGGGAAAGGCCTGGTGGTGGGGACTGTACTCCTTCCTGG  450

seq1  GGCACACTGAGCAGATCCGAGGGTTCACATATTTCTACTTCCTCACGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTGAGCAGATCCGAGGGTTCACATATTTCTACTTCCTCACGGTT  500

seq1  GCTTGCCACTTTACCGACTGTGTGGCCTGGGGAAGTCTCCTTACCTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCACTTTACCGACTGTGTGGCCTGGGGAAGTCTCCTTACCTTATT  550

seq1  CTCAACCCTCAAAAGGCTTGGCAAAGGAATTACGAAACACGGCTCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCTCAAAAGGCTTGGCAAAGGAATTACGAAACACGGCTCAGAAT  600

seq1  AGGCATAGCTGTGTAAGACAGGAATTC  627
      |||||||||||||||||||||||||||
seq2  AGGCATAGCTGTGTAAGACAGGAATTC  627