BAC Information

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BAC

Clone NameB6Ng01-056N24
Chromosome8 (Build37)
Map Location 49,320,424 - 49,469,660
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N24.bB6Ng01-056N24.g
ACCDH878905DH878906
length1,030482
definitionDH878905|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N24, 5' end.DH878906|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,320,424 - 49,321,457)(49,469,173 - 49,469,660)
sequence
gaattccatgtcatttcagaaaccatggccttgagcatagtcaggcagag
taggaggtaactgtacttcattttccctttgtggtttctctatggatcct
tagagaaatgaatatatccaaaaggtcaattctacttactttgtgtatta
atctaatggtaatagtaatttagcacttggaaagaaagaaagaaaggaga
aaaaagaagagacgccttacccgtgatgtaatctttcacatcatggattt
tgctcgcggggttgttattccgaaacatatacaggttaaaaggagcaggg
tcctttccgatccttttccagatttcaatgtccggtgtggtccatcttcc
cgccaaaatgtcataatctctttctccaaagtggattagtttggtgagcg
ggtcatacaagcccccgtggaatccaattaccagctgaaagtcgacgttg
gagtcaaagtagatctcaccataggcagtgtactggatctgtttcagcat
gagcccgttgctgctgaaaacagccagcggtgtccccgtgttgtccgagg
cgatgtagaactcatccccactgctgatctccatggcgaagagatgtcct
tggaggtcatagtacagggaggtgatttctgaactggaatggttgtagac
gtgagtaattctcgtggggtatgtcaggtcggcgtagaaaaactgaaggt
gctgtcccaggctggttttgctagaaacacgtcttcccaggccgtcgtac
cgatagatcactgtccagccactgcctttactgtagactcgagtcagaag
ccctttggagctgtattcaaaaatttcagtgcccctctgacgcaggaaac
catctttcatccagccgggactgaacatcgcccaggcgggtgatctgtcg
cgcagtcatagcgcagaggggtcagcgggcgttgctgctggggttgagca
agtggaagtttccatttaggtcgtagttggaccggcacatgatctttcgt
ttagtaaactgtttggagctgtccatcgac
catggactctgaagtcaatggctccatcttaaaattgagcagatgaaata
acgcccaaacagttttctgctacatgtttatagttcccgtatcatctgta
aatgtctacaggctgctcatcctgtccttctctgtcgacgataaggcttc
taaaacttctacttccagtgcccttagcggtgtagccgtctgcataggag
gcatgcaatcatctacacagctagtgaccattcatgcattcagcgggttt
gttgattgtgttgctgctgtggaagacacactgtcacagattcagcagtg
gttagatttagacaatcttacgttgtcactaccccatgtcctcttacagg
ttgtaatattttggaggaaggagacacgtagcagttcatttcagtcacca
tcactattgaaatataagagaatataagaggagaagacagcccaggcagt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49320424_49321457
seq2: B6Ng01-056N24.b_48_1077

seq1  GAATTCCATGTCATTTCAGAAACCATGGCCTTGAGCATAGTCAGGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCATTTCAGAAACCATGGCCTTGAGCATAGTCAGGCAGAG  50

seq1  TAGGAGGTAACTGTACTTCATTTTCCCTTTGTGGTTTCTCTATGGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTAACTGTACTTCATTTTCCCTTTGTGGTTTCTCTATGGATCCT  100

seq1  TAGAGAAATGAATATATCCAAAAGGTCAATTCTACTTACTTTGTGTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATGAATATATCCAAAAGGTCAATTCTACTTACTTTGTGTATTA  150

seq1  ATCTAATGGTAATAGTAATTTAGCACTTGGAAAGAAAGAAAGAAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGGTAATAGTAATTTAGCACTTGGAAAGAAAGAAAGAAAGGAGA  200

seq1  AAAAAGAAGAGACGCCTTACCCGTGATGTAATCTTTCACATCATGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGAGACGCCTTACCCGTGATGTAATCTTTCACATCATGGATTT  250

seq1  TGCTCGCGGGGTTGTTATTCCGAAACATATACAGGTTAAAAGGAGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGCGGGGTTGTTATTCCGAAACATATACAGGTTAAAAGGAGCAGGG  300

seq1  TCCTTTCCGATCCTTTTCCAGATTTCAATGTCCGGTGTGGTCCATCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCGATCCTTTTCCAGATTTCAATGTCCGGTGTGGTCCATCTTCC  350

seq1  CGCCAAAATGTCATAATCTCTTTCTCCAAAGTGGATTAGTTTGGTGAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAAATGTCATAATCTCTTTCTCCAAAGTGGATTAGTTTGGTGAGCG  400

seq1  GGTCATACAAGCCCCCGTGGAATCCAATTACCAGCTGAAAGTCGACGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATACAAGCCCCCGTGGAATCCAATTACCAGCTGAAAGTCGACGTTG  450

seq1  GAGTCAAAGTAGATCTCACCATAGGCAGTGTACTGGATCTGTTTCAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAGTAGATCTCACCATAGGCAGTGTACTGGATCTGTTTCAGCAT  500

seq1  GAGCCCGTTGCTGCTGAAAACAGCCAGCGGTGTCCCCGTGTTGTCCGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGTTGCTGCTGAAAACAGCCAGCGGTGTCCCCGTGTTGTCCGAGG  550

seq1  CGATGTAGAACTCATCCCCACTGCTGATCTCCATGGCGAAGAGATGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAGAACTCATCCCCACTGCTGATCTCCATGGCGAAGAGATGTCCT  600

seq1  TGGAGGTCATAGTACAGGGAGGTGATTTCTGAACTGGAATGGTTGTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCATAGTACAGGGAGGTGATTTCTGAACTGGAATGGTTGTAGAC  650

seq1  GTGAGTAATTCTCGTGGGGTATGTCAGGTCGGCGTAGAAAAACTGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAATTCTCGTGGGGTATGTCAGGTCGGCGTAGAAAAACTGAAGGT  700

seq1  GCTGTCCCAGGCTGGTTTTGCTAGAAACACGTCTTCCCAGGCCGTCGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCAGGCTGGTTTTGCTAGAAACACGTCTTCCCAGGCCGTCGTAC  750

seq1  CGATAGATCACTGTCCAGCCACTGCCTTTACTGTAGACTCGAGTCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGATCACTGTCCAGCCACTGCCTTTACTGTAGACTCGAGTCAGAAG  800

seq1  CCCTTTGGAGCTGTATTCAAAAATTTCAGTGCCCCTCTGACGCAGGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGAGCTGTATTCAAAAATTTCAGTGCCCCTCTGACGCAGGAAAC  850

seq1  CATC-TTCATCCAGCCGGTACTGAACATCGCCCAGGCGGGTGATTCTGTC  899
      |||| ||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CATCTTTCATCCAGCCGGGACTGAACATCGCCCAGGCGGGTGA-TCTGTC  899

seq1  GCGCAGGTCATAGCGCAGAGGGGTCAGGCGGGCGCTGCTGCTGGGGTTGA  949
      ||||| |||||||||||||||||||| ||||||| |||||||||||||||
seq2  GCGCA-GTCATAGCGCAGAGGGGTCA-GCGGGCGTTGCTGCTGGGGTTGA  947

seq1  GCAAGTGGAGGTTTCCATTTAGGTCGTAGTTGTACCGCCACATGATCTTT  999
      ||||||||| |||||||||||||||||||||| |||| ||||||||| ||
seq2  GCAAGTGGAAGTTTCCATTTAGGTCGTAGTTGGACCGGCACATGATC-TT  996

seq1  TCGTTTAGGTAAACTGTTTGGAGCTGTCCATCGAC  1034
      ||||||| |||||||||||||||||||||||||||
seq2  TCGTTTA-GTAAACTGTTTGGAGCTGTCCATCGAC  1030

seq1: chr8_49469173_49469660
seq2: B6Ng01-056N24.g_69_556 (reverse)

seq1  ACACACACACACACACACACACACACACACACACTGCCTGGGCTGTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTGCCTGGGCTGTCTTC  50

seq1  TCCTCTTATATTCTCTTATATTTCAATAGTGATGGTGACTGAAATGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTATATTCTCTTATATTTCAATAGTGATGGTGACTGAAATGAACT  100

seq1  GCTACGTGTCTCCTTCCTCCAAAATATTACAACCTGTAAGAGGACATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTGTCTCCTTCCTCCAAAATATTACAACCTGTAAGAGGACATGGG  150

seq1  GTAGTGACAACGTAAGATTGTCTAAATCTAACCACTGCTGAATCTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGACAACGTAAGATTGTCTAAATCTAACCACTGCTGAATCTGTGAC  200

seq1  AGTGTGTCTTCCACAGCAGCAACACAATCAACAAACCCGCTGAATGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTTCCACAGCAGCAACACAATCAACAAACCCGCTGAATGCATG  250

seq1  AATGGTCACTAGCTGTGTAGATGATTGCATGCCTCCTATGCAGACGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCACTAGCTGTGTAGATGATTGCATGCCTCCTATGCAGACGGCTA  300

seq1  CACCGCTAAGGGCACTGGAAGTAGAAGTTTTAGAAGCCTTATCGTCGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTAAGGGCACTGGAAGTAGAAGTTTTAGAAGCCTTATCGTCGACA  350

seq1  GAGAAGGACAGGATGAGCAGCCTGTAGACATTTACAGATGATACGGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGACAGGATGAGCAGCCTGTAGACATTTACAGATGATACGGGAAC  400

seq1  TATAAACATGTAGCAGAAAACTGTTTGGGCGTTATTTCATCTGCTCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATGTAGCAGAAAACTGTTTGGGCGTTATTTCATCTGCTCAATT  450

seq1  TTAAGATGGAGCCATTGACTTCAGAGTCCATGGAATTC  488
      ||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGGAGCCATTGACTTCAGAGTCCATGGAATTC  488