BAC Information

Click to search

BAC

Clone NameB6Ng01-057K04
Chromosome8 (Build37)
Map Location 72,988,537 - 73,138,502
singlet/doubletdoublet
Overlap geneKlhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4
Upstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
Downstream geneLrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057K04.bB6Ng01-057K04.g
ACCDH879446DH879447
length1,020472
definitionDH879446|Mus musculus domesticus DNA, BAC clone: B6Ng01-057K04, 5' end.DH879447|Mus musculus domesticus DNA, BAC clone: B6Ng01-057K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,137,476 - 73,138,502)(72,988,537 - 72,989,014)
sequence
gaattcggtcagcggatgggacctcatacaggactcgaaggcttcacaga
gaagcactcaggaaactagggacgttaaacagcaggctagtcttttcaac
agaagacacatatggctgtctcctacccagaatgtggatgtggttaacag
cctggtgacttgtgctgtctgcagggtcaggccagtccttattgtggaca
ttttgtctcttggtcaacaggacccatctttattgaagtgtccatatgca
ctctgtaaagagattcaatgtaaacatgccttaagtttctttggacacag
gggattaggttaattatcagcagaatggttttttccccccaaattgtgct
taaatatggctacaataaactgtcctgtgtcagactccagctgacaagtt
ctgttaaaagggatttccctcctgcctcaccagggttgtttctctgctgg
ccctggtgttggcagagaccctcacagaattataaataattattgtagat
aaacagggcatggttgaaggcagggtggctaccatggtgcacccccacag
cattgcatttctgtgtcagagtctagaggatccctgtgcagagggttttg
gagaacagccctgaactgcaggagcttggccacacccaccaccatggacc
ccggagagcagctgcttctgtttggttgctgcctcctgtgctttcccagg
ccagcctgagctactctaaaagactggatcctcagagaggatctggggcc
aaggctcagggtgcaggccttccctagaactcatgggagagtaataacat
cacctccatttcacagacagggaaactgaggcccaggctgcttgagtggc
ttctgaaggtgtctataactaaacagagagtctggccatagccgtgaaga
caccttgatgtaccacagatgatgagttttttaaagtggtccatgcacac
ttgaggctggcctggaacttgaaagcatctgcaaatccaagctgtttcta
ggcgggggagtaggcctttt
cttatcaattcgagcacttgctccccaacaaaagggcaagacagcactga
gatacagctgggaggatccaggctccagggctggatccagtccccaaagc
ccagctgagttggagtatggagctcaggagccggagggggcaaaacgtcc
aaactttatcccagaggatgccactaggcaccccattgccttcatgaggt
atggaggtccctgaagatgagggaagggcttggctgccaggtccctgcct
ggctccattccttgctgcctattccatttagaacttcattcttctgctct
tagtccacctccccatggctgaaataggagctctgggaggccagccagaa
gggttctttctcctgccacatcctgatgtccacccctccacccccacagt
gaaggagccttgtcacattagtgacctggacagttggtgacaaggtagat
gagtgggagggatgggtggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_73137476_73138502
seq2: B6Ng01-057K04.b_37_1056 (reverse)

seq1  AAAAGGCCTACTCCCCCCGCCTGGAAACAGCTCTGCGATCTGCAGATGGC  50
      |||||||||||| ||||||||| ||||||||| || ||| ||||||| ||
seq2  AAAAGGCCTACT-CCCCCGCCTAGAAACAGCT-TG-GATTTGCAGAT-GC  46

seq1  TCTCCAAGTTCCAGGCCAGCCCTCAAGTGTGCATGGAACCACTCTAAAAA  100
      | | ||||||||||||||| |||||||||||||||| |||||| ||||||
seq2  T-TTCAAGTTCCAGGCCAG-CCTCAAGTGTGCATGG-ACCACTTTAAAAA  93

seq1  ACTCATCATCTGTGGTACATCAAGGTGTCTTCACGGCTATGGCCAGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCATCTGTGGTACATCAAGGTGTCTTCACGGCTATGGCCAGACTC  143

seq1  TCTGTTTAGTTATAGACACCTTCAGAAGCCACTCAAGCAGCCTGGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAGTTATAGACACCTTCAGAAGCCACTCAAGCAGCCTGGGCCTC  193

seq1  AGTTTCCCTGTCTGTGAAATGGAGGTGATGTTATTACTCTCCCATGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCTGTCTGTGAAATGGAGGTGATGTTATTACTCTCCCATGAGTT  243

seq1  CTAGGGAAGGCCTGCACCCTGAGCCTTGGCCCCAGATCCTCTCTGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAGGCCTGCACCCTGAGCCTTGGCCCCAGATCCTCTCTGAGGAT  293

seq1  CCAGTCTTTTAGAGTAGCTCAGGCTGGCCTGGGAAAGCACAGGAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTTTAGAGTAGCTCAGGCTGGCCTGGGAAAGCACAGGAGGCAGC  343

seq1  AACCAAACAGAAGCAGCTGCTCTCCGGGGTCCATGGTGGTGGGTGTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAGAAGCAGCTGCTCTCCGGGGTCCATGGTGGTGGGTGTGGCC  393

seq1  AAGCTCCTGCAGTTCAGGGCTGTTCTCCAAAACCCTCTGCACAGGGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTGCAGTTCAGGGCTGTTCTCCAAAACCCTCTGCACAGGGATCC  443

seq1  TCTAGACTCTGACACAGAAATGCAATGCTGTGGGGGTGCACCATGGTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTCTGACACAGAAATGCAATGCTGTGGGGGTGCACCATGGTAGC  493

seq1  CACCCTGCCTTCAACCATGCCCTGTTTATCTACAATAATTATTTATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCCTTCAACCATGCCCTGTTTATCTACAATAATTATTTATAATT  543

seq1  CTGTGAGGGTCTCTGCCAACACCAGGGCCAGCAGAGAAACAACCCTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGTCTCTGCCAACACCAGGGCCAGCAGAGAAACAACCCTGGTG  593

seq1  AGGCAGGAGGGAAATCCCTTTTAACAGAACTTGTCAGCTGGAGTCTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGGGAAATCCCTTTTAACAGAACTTGTCAGCTGGAGTCTGACA  643

seq1  CAGGACAGTTTATTGTAGCCATATTTAAGCACAATTTGGGGGGAAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTTTATTGTAGCCATATTTAAGCACAATTTGGGGGGAAAAAAC  693

seq1  CATTCTGCTGATAATTAACCTAATCCCCTGTGTCCAAAGAAACTTAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCTGATAATTAACCTAATCCCCTGTGTCCAAAGAAACTTAAGGC  743

seq1  ATGTTTACATTGAATCTCTTTACAGAGTGCATATGGACACTTCAATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACATTGAATCTCTTTACAGAGTGCATATGGACACTTCAATAAAG  793

seq1  ATGGGTCCTGTTGACCAAGAGACAAAATGTCCACAATAAGGACTGGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTGTTGACCAAGAGACAAAATGTCCACAATAAGGACTGGCCTG  843

seq1  ACCCTGCAGACAGCACAAGTCACCAGGCTGTTAACCACATCCACATTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAGACAGCACAAGTCACCAGGCTGTTAACCACATCCACATTCTG  893

seq1  GGTAGGAGACAGCCATATGTGTCTTCTGTTGAAAAGACTAGCCTGCTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGACAGCCATATGTGTCTTCTGTTGAAAAGACTAGCCTGCTGTT  943

seq1  TAACGTCCCTAGTTTCCTGAGTGCTTCTCTGTGAAGCCTTCGAGTCCTCT  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAACGTCCCTAGTTTCCTGAGTGCTTCTCTGTGAAGCCTTCGAGTCCTGT  993

seq1  ATGAGGTCCCATCCGCTGACCGAATTC  1027
      |||||||||||||||||||||||||||
seq2  ATGAGGTCCCATCCGCTGACCGAATTC  1020

seq1: chr8_72988537_72989014
seq2: B6Ng01-057K04.g_70_547

seq1  GAATTCCTTACCAATTCGAGCACTTGCTCCCCAACAAAAGGGCAAGACAG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCAATTCGAGCACTTGCTCCCCAACAAAAGGGCAAGACAG  50

seq1  CACTGAGATACAGCTGGGAGGATCCAGGCTCCAGGGCTGGATCCAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGATACAGCTGGGAGGATCCAGGCTCCAGGGCTGGATCCAGTCCC  100

seq1  CAAAGCCCAGCTGAGTTGGAGTATGGAGCTCAGGAGCCGGAGGGGGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCAGCTGAGTTGGAGTATGGAGCTCAGGAGCCGGAGGGGGCAAA  150

seq1  ACGTCCAAACTTTATCCCAGAGGATGCCACTAGGCACCCCATTGCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCAAACTTTATCCCAGAGGATGCCACTAGGCACCCCATTGCCTTCA  200

seq1  TGAGGTATGGAGGTCCCTGAAGATGAGGGAAGGGCTTGGCTGCCAGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTATGGAGGTCCCTGAAGATGAGGGAAGGGCTTGGCTGCCAGGTCC  250

seq1  CTGCCTGGCTCCATTCCTTGCTGCCTATTCCATTTAGAACTTCATTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCTCCATTCCTTGCTGCCTATTCCATTTAGAACTTCATTCTTC  300

seq1  TGCTCTTAGTCCACCTCCCCATGGCTGAAATAGGAGCTCTGGGAGGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAGTCCACCTCCCCATGGCTGAAATAGGAGCTCTGGGAGGCCAG  350

seq1  CCAGAAGGGTTCTTTCTCCTGCCACATCCTGATGTCCACCCCTCCACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGGTTCTTTCTCCTGCCACATCCTGATGTCCACCCCTCCACCCC  400

seq1  CACAGTGAAGGAGCCTTGTCACATTAGTGACCTGGACAGTTGGTGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAAGGAGCCTTGTCACATTAGTGACCTGGACAGTTGGTGACAAG  450

seq1  GTAGATGAGTGGGAGGGATGGGTGGAGA  478
      ||||||||||||||||||||||||||||
seq2  GTAGATGAGTGGGAGGGATGGGTGGAGA  478