BAC Information

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BAC

Clone NameB6Ng01-058A22
Chromosome8 (Build37)
Map Location 53,905,679 - 53,988,513
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A22.bB6Ng01-058A22.g
ACCDH879741DH879742
length1,140851
definitionDH879741|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A22, 5' end.DH879742|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,987,368 - 53,988,513)(53,905,679 - 53,906,532)
sequence
gaattcattgcagtgtttcaagaggtttggtacggtgtgtcgtaaaagca
tgttttgaatttccaggtgatttactgagtaacctgtatatacatatact
tatgtgtgctgtctactagataatatttttctatcacaaagaaatgaact
tgaattaaacttctcttgagagactgacagtttccaaggtctgtacaatt
ctgatcacattttcatcaatgactaatgcgaagtttgcttcctatttgtt
cctgattgagtaagctatttaatacttgttattatatgaacattcaacca
cagccagcagcctgaaattcttactaaataatgctagattgtatattgtt
tcccataagatacatcatttttttgaaatgaagaatacttgatagcagtt
caacaacacattggggatcatttgaaacagcaaaattatcagcaaagaga
aactaaggaaattatatacctacatgtaagacaaaaacagcatgcttttt
aaaaaattaggtatttatttcatttacatttccaatgctatccaaaaagt
cccccacaccctcccccacctactcccccaccaacccactcccacttctt
ggccctggcattcccctgtattgaggcatataaagtttgcacgaccaatg
ggcctctttccaatgatggccaactaggccatcttctgatacatatgcag
ctagagacaagagctctggggtactggttagttcatattgttgctccacc
tatagggttgaagatccctttagctccttgggtactttctctagctcctc
cattggggaccctgtgatcattccaatagctgactgtgagcattcacttc
tgtgtttgctaggccttgctgaaaggaccctgatatagctgtctcttgtg
agactgtgccggggccttacagcatgccttttaattacacagtatgagac
agaatatggactattccatctttacatttcctttgagaacctttccattg
tataaatcagatttccgctgatgtttaaggtctctaatctaaagttgtcc
accagaaatctacagattgaaatcataatcctcacgttcgatcatcgact
gaaagcctagtgagcatcttatatcttgacaaataagtct
gaattcttcttcctgaacaaggtttgtatcagatgatttctttcacttgt
aatatttcatttgttgtatttcttgaataaaatgaagtaaaagcatcaga
taaccatgcattgttgttctgttggtgttcattagaagctgaactccatc
ctacacaaacttcctagaatcctaaatatgctaaattctaatggtttgga
acttaagggcttttaaagtatatataaggggtaacttttattattatcac
taaatctaaacaaaattcatttagtctttgaatattatgtctgtacttag
ctttacgtgacatgatagttttcaaggacatgtgagaccatgcacaggtt
agatattgatttgtaatttttgcaataatttttatttttattggttattt
taattatttacattccaaatgttatcgcttttcccagtttcctgtccaca
agtcccctattccctacccctatcccctgcctctatgagggtgctcccct
acctgcctacccactcctgagtcagtgccctagcattcctctatcctgaa
tcataaagtctccacaggaccaaagggctcccctcccagtgatgccagat
aaagcagtcctctgctacatatgcagaggatatggatatgggtccctcca
tgcgtactttttagttggtggtttagtccctgggagctctgggggtgggg
gtctggttggttaatattgctgttcttctctggggttgcaaaccccttca
actccttcagctttcccctaacttttccattgtgggtcttttgctcagtc
cctgttctcagtttggctacttgcatctgcttctgtttgctaaagctctg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53987368_53988513
seq2: B6Ng01-058A22.b_31_1170 (reverse)

seq1  AGACATATTTGTC-AGATAT-AGATGCTCACTAAGGCTTTCAGTTCTGAA  48
      |||| |||||||| |||||| ||||||||||| ||||||||||   |  |
seq2  AGACTTATTTGTCAAGATATAAGATGCTCACT-AGGCTTTCAG---TCGA  46

seq1  TGAATCTGACGTGAGGATTATGATTTCAATCTGTAGATTTCTGGTGGACA  98
      || |||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TG-ATCGAACGTGAGGATTATGATTTCAATCTGTAGATTTCTGGTGGACA  95

seq1  AACTTTTAGATTAGAGACCTTAAACATCAGCGGAAATCTGATTTATACAA  148
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  A--CTTTAGATTAGAGACCTTAAACATCAGCGGAAATCTGATTTATACAA  143

seq1  TGGAAAGGTTCTCAAAGGAATTGTAAAGATGG-ATAGTCCATATTCTTGT  197
      |||||||||||||||||||| ||||||||||| ||||||||||||| |||
seq2  TGGAAAGGTTCTCAAAGGAAATGTAAAGATGGAATAGTCCATATTC-TGT  192

seq1  CTTCATACTGTGTAATTAAAAGGCATGCTGTTAGGCCCCGGCACAGTCTC  247
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  C-TCATACTGTGTAATTAAAAGGCATGCTGTAAGGCCCCGGCACAGTCTC  241

seq1  ACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAGGCCTAGCAAACACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAGGCCTAGCAAACACAG  291

seq1  AAGTGAATGCTCACAGTCAGCTATTGGAATGATCACAGGGTCCCCAATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATGCTCACAGTCAGCTATTGGAATGATCACAGGGTCCCCAATGG  341

seq1  AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAG  391

seq1  GTGGAGCAACAATATGAACTAACCAGTACCCCAGAGCTCTTGTCTCTAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCAACAATATGAACTAACCAGTACCCCAGAGCTCTTGTCTCTAGC  441

seq1  TGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGAAAGAGGCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGAAAGAGGCCC  491

seq1  ATTGGTCGTGCAAACTTTATATGCCTCAATACAGGGGAATGCCAGGGCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCGTGCAAACTTTATATGCCTCAATACAGGGGAATGCCAGGGCCA  541

seq1  AGAAGTGGGAGTGGGTTGGTGGGGGAGTAGGTGGGGGAGGGTGTGGGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGAGTGGGTTGGTGGGGGAGTAGGTGGGGGAGGGTGTGGGGGA  591

seq1  CTTTTTGGATAGCATTGGAAATGTAAATGAAATAAATACCTAATTTTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGATAGCATTGGAAATGTAAATGAAATAAATACCTAATTTTTTA  641

seq1  AAAAGCATGCTGTTTTTGTCTTACATGTAGGTATATAATTTCCTTAGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGCTGTTTTTGTCTTACATGTAGGTATATAATTTCCTTAGTTT  691

seq1  CTCTTTGCTGATAATTTTGCTGTTTCAAATGATCCCCAATGTGTTGTTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTGATAATTTTGCTGTTTCAAATGATCCCCAATGTGTTGTTGA  741

seq1  ACTGCTATCAAGTATTCTTCATTTCAAAAAAATGATGTATCTTATGGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATCAAGTATTCTTCATTTCAAAAAAATGATGTATCTTATGGGAA  791

seq1  ACAATATACAATCTAGCATTATTTAGTAAGAATTTCAGGCTGCTGGCTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATACAATCTAGCATTATTTAGTAAGAATTTCAGGCTGCTGGCTGT  841

seq1  GGTTGAATGTTCATATAATAACAAGTATTAAATAGCTTACTCAATCAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATGTTCATATAATAACAAGTATTAAATAGCTTACTCAATCAGGA  891

seq1  ACAAATAGGAAGCAAACTTCGCATTAGTCATTGATGAAAATGTGATCAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGGAAGCAAACTTCGCATTAGTCATTGATGAAAATGTGATCAGA  941

seq1  ATTGTACAGACCTTGGAAACTGTCAGTCTCTCAAGAGAAGTTTAATTCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAGACCTTGGAAACTGTCAGTCTCTCAAGAGAAGTTTAATTCAA  991

seq1  GTTCATTTCTTTGTGATAGAAAAATATTATCTAGTAGACAGCACACATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTCTTTGTGATAGAAAAATATTATCTAGTAGACAGCACACATAA  1041

seq1  GTATATGTATATACAGGTTACTCAGTAAATCACCTGGAAATTCAAAACAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTATATACAGGTTACTCAGTAAATCACCTGGAAATTCAAAACAT  1091

seq1  GCTTTTACGACACACCGTACCAAACCTCTTGAAACACTGCAATGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACGACACACCGTACCAAACCTCTTGAAACACTGCAATGAATTC  1140

seq1: chr8_53905679_53906532
seq2: B6Ng01-058A22.g_70_920

seq1  GAATTCTTCTTCCTGAACAAGGTTTGTATCAGATGATTTCTTTCACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTCCTGAACAAGGTTTGTATCAGATGATTTCTTTCACTTGT  50

seq1  AATATTTCATTTGTTGTATTTCTTGAATAAAATGAAGTAAAAGCATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATTTGTTGTATTTCTTGAATAAAATGAAGTAAAAGCATCAGA  100

seq1  TAACCATGCATTGTTGTTCTGTTGGTGTTCATTAGAAGCTGAACTCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGCATTGTTGTTCTGTTGGTGTTCATTAGAAGCTGAACTCCATC  150

seq1  CTACACAAACTTCCTAGAATCCTAAATATGCTAAATTCTAATGGTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAACTTCCTAGAATCCTAAATATGCTAAATTCTAATGGTTTGGA  200

seq1  ACTTAAGGGCTTTTAAAGTATATATAAGGGGTAACTTTTATTATTATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGGCTTTTAAAGTATATATAAGGGGTAACTTTTATTATTATCAC  250

seq1  TAAATCTAAACAAAATTCATTTAGTCTTTGAATATTATGTCTGTACTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAAACAAAATTCATTTAGTCTTTGAATATTATGTCTGTACTTAG  300

seq1  CTTTACGTGACATGATAGTTTTCAAGGACATGTGAGACCATGCACAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACGTGACATGATAGTTTTCAAGGACATGTGAGACCATGCACAGGTT  350

seq1  AGATATTGATTTGTAATTTTTGCAATAATTTTTATTTTTATTGGTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGATTTGTAATTTTTGCAATAATTTTTATTTTTATTGGTTATTT  400

seq1  TAATTATTTACATTCCAAATGTTATCGCTTTTCCCAGTTTCCTGTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTACATTCCAAATGTTATCGCTTTTCCCAGTTTCCTGTCCACA  450

seq1  AGTCCCCTATTCCCTACCCCTATCCCCTGCCTCTATGAGGGTGCTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTATTCCCTACCCCTATCCCCTGCCTCTATGAGGGTGCTCCCCT  500

seq1  ACCTGCCTACCCACTCCTGAGTCAGTGCCCTAGCATTCCTCTATCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTACCCACTCCTGAGTCAGTGCCCTAGCATTCCTCTATCCTGAA  550

seq1  TCATAAAGTCTCCACAGGACCAAAGGGCTCCCCTCCCAGTGATGCCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTCTCCACAGGACCAAAGGGCTCCCCTCCCAGTGATGCCAGAT  600

seq1  AAAGCAGTCCTCTGCTACATATGCAGAGGATATGGATATGGGTCCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTCCTCTGCTACATATGCAGAGGATATGGATATGGGTCCCTCCA  650

seq1  TGCGTACTTTTTAGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACTTTTTAGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGTGGGG  700

seq1  GTCTGGTTGGTTAATATTGCTGTTCTTTCTCTGGGGTTGCAAACCCCTTC  750
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCTGGTTGGTTAATATTGCTGTTC-TTCTCTGGGGTTGCAAACCCCTTC  749

seq1  AACTCCTTCAGTCTTTCCCCTAACTTTTCCATTGTGGGTCTTTTGCTCAG  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTCAG-CTTTCCCCTAACTTTTCCATTGTGGGTCTTTTGCTCAG  798

seq1  TCCCTGTTCTCAGGTTGGCTACTTGCATCTGCTTCTGTATTGCTCAAGCT  850
      ||||||||||||| |||||||||||||||||||||||| ||||| |||||
seq2  TCCCTGTTCTCAGTTTGGCTACTTGCATCTGCTTCTGT-TTGCTAAAGCT  847

seq1  CTGG  854
      ||||
seq2  CTGG  851