BAC Information

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BAC

Clone NameB6Ng01-058E18
Chromosome8 (Build37)
Map Location 12,882,188 - 13,042,153
singlet/doubletdoublet
Overlap geneLOC100040229, Mcf2l, F7, F10
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a
Downstream geneProz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E18.bB6Ng01-058E18.g
ACCDH879913DH879914
length1971,040
definitionDH879913|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E18, 5' end.DH879914|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,041,957 - 13,042,153)(12,882,188 - 12,883,642)
sequence
cacttattgaaaaaggcaattccttatctactgaacagttttatatttat
gtatatatgaatatatatacatactttaaacagatgcttaaaataaaaat
cctgcaattatggattctctcattagatataaaccattggtttggtagca
aagaattaaaggaatccttccttccttcctgccttccttccttcctt
gaattcattatctgcacttccctgacaggaaaacctgtcagtatgtccca
tgagacaaggactgtatggttcaaggtcaggctttgtcacacctatgtgg
gtgtggcaggtcctgaacttgccactacacaaggcagtggcagctacccc
gggctcgggagctgggcatctctgccctgtctcacgtcactcctgactcc
tttgctctctctgtatgtggcatccttcctgacccagagccatggggccc
agagggctgtcaaacctgcatagaggctcggagcaaaagcacccggacac
tctcctgttgcagtgacagacaagggctgtgattaagaacttagagcctg
agtgagcttggtgtgacggggtcagagctcctgaggtctttaccgtctcg
atttctcgttaccctgcccagattattccagaagccctttgaagtgatgt
aacttatgtgtcagaacttacatttttaaatcgttaatttttgtagtgac
aaaataaaggcctcactcttccatctaaacatggagcacatacagaatgc
ccctatctcacacactcacagactcacccactctcatctccccagactcc
atccctagtcccagaccccggaagccactgctctgccttctgtctgggtg
gtttggcactccagggccgtagcaaatgtcctcattgagttttttcactc
atggctagataagttcgttcgccactcatcagagatgtctgtgtccaggc
agagtcaagagtccaggctgtagatgacccagcacgtgcttgcccttact
gcaatgaatgcatgggcttcatgcctgagtagctgttgtgagcagtggtg
accgtggtgtgcttgcactcctacgtgcctcagagctgggttgagggtga
cttgccaggacagagttgttttacaggctgggttcctcagcaccatctct
gccattccgatggcaggagctcgtcttcacgcacaggagctgtgttcagt
ctgccgtcccattcgtcaacactctgccattcctgaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13041957_13042153
seq2: B6Ng01-058E18.b_52_248 (reverse)

seq1  AAGGAAGGAAGGAAGGCAGGAAGGAAGGAAGGATTCCTTTAATTCTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGCAGGAAGGAAGGAAGGATTCCTTTAATTCTTTGC  50

seq1  TACCAAACCAATGGTTTATATCTAATGAGAGAATCCATAATTGCAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACCAATGGTTTATATCTAATGAGAGAATCCATAATTGCAGGATT  100

seq1  TTTATTTTAAGCATCTGTTTAAAGTATGTATATATATTCATATATACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAGCATCTGTTTAAAGTATGTATATATATTCATATATACATA  150

seq1  AATATAAAACTGTTCAGTAGATAAGGAATTGCCTTTTTCAATAAGTG  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAACTGTTCAGTAGATAAGGAATTGCCTTTTTCAATAAGTG  197

seq1: chr8_12882188_12883642
seq2: B6Ng01-058E18.g_67_1106

seq1  GAATTCATTATCTGCACTTCCCTGACAGGAAAACCTGTCAGTATGTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTGCACTTCCCTGACAGGAAAACCTGTCAGTATGTCCCA  50

seq1  TGAGACAAGGACTGTATGGTTCAAGGTCAGGCTTTGTCACACCTATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGGACTGTATGGTTCAAGGTCAGGCTTTGTCACACCTATGTGG  100

seq1  GTGTGGCAGGTCCTGAACTTGCCACTACACAAGGCAGTGGCAGCTACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCAGGTCCTGAACTTGCCACTACACAAGGCAGTGGCAGCTACCCC  150

seq1  GGGCTCGGGAGCTGGGCATCTCTGCCCTGTCTCACGTCACTCCTGACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGGGAGCTGGGCATCTCTGCCCTGTCTCACGTCACTCCTGACTCC  200

seq1  TTTGCTCTCTCTGTATGTGGCATCCTTCCTGACCCAGAGCCATGGGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCTCTGTATGTGGCATCCTTCCTGACCCAGAGCCATGGGGCCC  250

seq1  AGAGGGCTGTCAAACCTGCATAGAGGCTCGGAGCAAAAGCACCCGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTGTCAAACCTGCATAGAGGCTCGGAGCAAAAGCACCCGGACAC  300

seq1  TCTCCTGTTGCAGTGACAGACAAGGGCTGTGATTAAGAACTTAGAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTGCAGTGACAGACAAGGGCTGTGATTAAGAACTTAGAGCCTG  350

seq1  AGTGAGCTTGGTGTGACGGGGTCAGAGCTCCTGAGGTCTTTACCGTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTTGGTGTGACGGGGTCAGAGCTCCTGAGGTCTTTACCGTCTCG  400

seq1  ATTTCTCGTTACCCTGCCCAGATTATTCCAGAAGCCCTTTGAAGTGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCGTTACCCTGCCCAGATTATTCCAGAAGCCCTTTGAAGTGATGT  450

seq1  AACTTATGTGTCAGAACTTACATTTTTAAATCGTTAATTTTTGTAGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGTGTCAGAACTTACATTTTTAAATCGTTAATTTTTGTAGTGAC  500

seq1  AAAATAAAGGCCTCACTCTTCCATCTAAACATGGAGCACATACAGAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGGCCTCACTCTTCCATCTAAACATGGAGCACATACAGAATGC  550

seq1  CCCTATCTCACACACTCACAGACTCACCCACTCTCATCTCCCCAGACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTCACACACTCACAGACTCACCCACTCTCATCTCCCCAGACTCC  600

seq1  ATCCCTAGTCCCAGACCCCGGAAGCCACTGCTCTGCCTTCTGTCTGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGTCCCAGACCCCGGAAGCCACTGCTCTGCCTTCTGTCTGGGTG  650

seq1  GTTTGGCACTCCAGGGCCGTAGCAAATGTCCTCATTGAGTTTTTTCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCACTCCAGGGCCGTAGCAAATGTCCTCATTGAGTTTTTTCACTC  700

seq1  ATGGCTAGATAAGTTCGTTCGCCACTCATCAGAGATGTCTGTGTCCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGATAAGTTCGTTCGCCACTCATCAGAGATGTCTGTGTCCAGGC  750

seq1  AGAGTCAAGAGTCCAGGCTGTAGATGACCCAGCACGTGCTTGCCCTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAGAGTCCAGGCTGTAGATGACCCAGCACGTGCTTGCCCTTACT  800

seq1  GCAAATGAATGCATGGGCTTCATGCCCTGAGTAGCTGTTGTGAGCAGTGG  850
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GC-AATGAATGCATGGGCTTCATG-CCTGAGTAGCTGTTGTGAGCAGTGG  848

seq1  TGACCGTGGTGTGCTTTGCACTCCTACGTGCCTCCAGAGCTGGGTGAAGG  900
      |||||||||||||| |||||||||||||||||| |||||||||||  |||
seq2  TGACCGTGGTGTGC-TTGCACTCCTACGTGCCT-CAGAGCTGGGTTGAGG  896

seq1  GTGACTGGCCAGGACAAGAGCTGTTTTACAGGCTGGGTTCCTCAGCACCA  950
      |||||| |||||||| |||| |||||||||||||||||||||||||||||
seq2  GTGACTTGCCAGGAC-AGAGTTGTTTTACAGGCTGGGTTCCTCAGCACCA  945

seq1  TCTCTGCCATTCCGATGGCAGGAGCCTCG-CCTCACGCACAGGAGGCTGT  999
      |||||||||||||||||||||||| |||| | |||||||||||| |||||
seq2  TCTCTGCCATTCCGATGGCAGGAG-CTCGTCTTCACGCACAGGA-GCTGT  993

seq1  GTCCAGTCTGCCGTCCCCATTCTGTCAACACTCTGCCATCCCTGAGG-TC  1048
      || ||||||||||| ||||||| |||||||||||||||| ||||||| | 
seq2  GTTCAGTCTGCCGT-CCCATTC-GTCAACACTCTGCCATTCCTGAGGCT-  1040

seq1  ACTCGGAGGTTTGGACCACAGAGGCTGGGTAAACACAGATAAGCCTGTTT  1098
                                                        
seq2  --------------------------------------------------  1040

seq1  TCCAGCTCGCTTGCCACAGTGTGTGTGATCTGGCCTTTCCTTCGGCCTTC  1148
                                                        
seq2  --------------------------------------------------  1040

seq1  TTCATTCCAACATTTTACCGCAATAGTGTGTTTGGCCAAGTTGTCCCCAA  1198
                                                        
seq2  --------------------------------------------------  1040

seq1  AACTCTGCAGTTACCCACGTCACTCTCTGCTGTGGGAGGCCTCAAGAGTA  1248
                                                        
seq2  --------------------------------------------------  1040

seq1  TACGTGGAGAGGCCCCTTCAGGAATCCCGTCTGGCCTCTCAGACACCTAC  1298
                                                        
seq2  --------------------------------------------------  1040

seq1  CATCCAAACCTGTGCAAAGTGACTCTGTGAACGGACCCTGCCCAGTGCAG  1348
                                                        
seq2  --------------------------------------------------  1040

seq1  TTGCCTCTGGACCTTGCCCCCCACCCCCCCACCTTTGGTCAGTCTTTGCC  1398
                                                        
seq2  --------------------------------------------------  1040

seq1  GTAGGCCCATCCTCACCAAAGGGTGATTCTTGCTGTGGAGCCATCCCTCC  1448
                                                        
seq2  --------------------------------------------------  1040

seq1  TGAGGCT  1455
             
seq2  -------  1040