BAC Information

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BAC

Clone NameB6Ng01-059D19
Chromosome8 (Build37)
Map Location 46,860,303 - 47,000,344
singlet/doubletdoublet
Overlap geneSorbs2, Pdlim3
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
Downstream geneCcdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D19.bB6Ng01-059D19.g
ACCDH880577DH880578
length1,2411,062
definitionDH880577|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D19, 5' end.DH880578|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,999,055 - 47,000,344)(46,860,303 - 46,861,383)
sequence
gaattcacctaggtgaaatctgccaggacatggcaattttcaaagacaag
acttatgtctggttgatggctgtataattacagatatgaacaaaactgcc
ccccccctttccctcccagaaaaaaagacagcagacacagtagtgtagga
gggactccttttgattattcttactcatagaagtttaaatattcctattt
atgatatgaaaccaagtttcacatagtttgtaagttgatgaaattcaccc
ggcagtgtttctaaccacatactgcagtaactcatcaatgtgtttgttaa
actgattatgcaatttttgagagagtcacattgataataatgaaactttt
aaaaacattatttattattactttttcatagtaataaaactaagttttat
ctactgtgcttttagtaagtatattaataataaatgattaaagatgtaat
tctacttgtcaggcaatattaaaagaagcaatgggattttatttcataat
aaatcttttaaataggaggagctccgtgacaaagtacttggagcagacat
taacaatgaagaagaaactagtcagaataaggactaacaggagttgaatg
tcttcactaacaactggaaacatctgcttataaaaacttaaagcaatgca
aacatttaaaacagcaaaaacaattcctctcggcacaatcccattagaaa
aacagaaaggatcatctcataatagtgtttggacacgccccctcccgttt
cgtcacctacaaaagacagccgatgtaagtaaaatcttaagccacctctg
agaatactaaatcctggcacttacaaagaacactgcaacttttaaatgga
gatttggtctttatgtgatttgattttaaccaggcttaaatgtttgcaaa
cattttttccccttaaagcttttgcatagccttctttccacaagacatgt
taaaagacagcattaaagtcgacatcagcacatgtttagtcagtatgcct
cagttcaaaagactcaatattacttcatggaggatgctccctagagctgt
ggcaacctgacctggagtgttcataattttgtcatctgagtaaactgcta
agcgtgttactgagcgggtacgatcttcacgccggagttcattccaagaa
tgtaagggcatcttagagcactttcagttccggcgattctacgactgacg
agaaggggttcagtcatgcaagttaaccggaaggtgctgca
gaattccagtgctattcacaggaaacatggtcaagcatgctgtgtgcgtt
atttcttgtcacgctacaatcaaggaagccaggtcaccaggtggttaaaa
ctggcaaagcttcacagagcatgctgccactttaaactcagacacacatg
tcattaggtacccagggatctacaacaagtcactatccatgcgtctacaa
acctcttttgtgagtttttgcagccatcgtcatgcttgtgaaggtagagt
gaaggtgaactataaggagtagtttactctaaatcatttatataaaatta
aacagatatagtaatttcatacatttttagccagagagctgttgtgtgag
gagttttgttgttattattgttattgttttattttaatctctcagtgctt
agcaagaaaagggcttattgattaagcctgaagatctgagctcgatccct
agaacctaaggtggaaggaaagcattgatttccaacagcttttcttctgc
atgcacacatgcacacatgcatgcatgcacgtacgcacacagatacacta
agccagtacatttctggtaaaactaacgctgggaaattgaccatggtgta
tctcacagggctttcaatgtgggttgccattccttttcaggcatgactgg
gaccctccagacagaaaggtggacaccaggaaatttcgatcggagccaag
gagtatttttgaatatgagcctgggaagtcgtccattctgcagcacgaaa
gacccgtaagcccttgtcattgatccaaaagccagcttgctaggccacag
ggtccccaagcaaacctgaatctcatcccatttatttgacattgtcagaa
atgttgtttatttttagccatgtcttgtgtatcttgttcagatttaaaga
ggtactttaatagcgatagatagatagatagatagatagatagatagata
gatagatgatgatgatgttcgagatgcaagtatgcaagtctcatatcatt
agctaagctggttgtgcctaatataacactcatacatgaaatgctaattg
caaatcatcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46999055_47000344
seq2: B6Ng01-059D19.b_46_1286 (reverse)

seq1  TGCAGCACTCCTTCCGGTGTTGACTGTGGCAGTGGACGTAGCACCCCTTC  50
      |||||||  |||||||  ||| ||  | |||   |||   | ||||||||
seq2  TGCAGCA--CCTTCCG--GTTAAC--TTGCA--TGAC--TGAACCCCTTC  40

seq1  TTCCGTCAGTACCGTTAGTACAATCTGCCCGGGTGACTTGAAAGTTGCTG  100
      |  ||||||      | ||| |||| |||     ||  |||||| |||| 
seq2  T--CGTCAG------TCGTAGAATC-GCC----GGAACTGAAAG-TGCT-  75

seq1  CTAAGATGGCCCCTAACATTCCTTTGGAAATGGAACTTCCGGGCGTGAAG  150
      ||||||||  |||| ||||||  ||||||   |||||  | |||||||||
seq2  CTAAGATG--CCCTTACATTC--TTGGAA--TGAACT--CCGGCGTGAAG  117

seq1  ATCGTACACGCTCAGTTTAACACGCCTATGCAGTTGTACTCAGATGACAA  200
      ||||||| |||||||  |||||||| || |||||| ||||||||||||||
seq2  ATCGTACCCGCTCAG--TAACACGCTTA-GCAGTT-TACTCAGATGACAA  163

seq1  TATTATGGAAACACTTCAGGGTCAGGTTGCCACAGCTCTAGGGGAGACAT  250
       ||||||  |||||| || ||||||||||||||||||||| ||||| |||
seq2  AATTATG--AACACTCCA-GGTCAGGTTGCCACAGCTCTA-GGGAG-CAT  208

seq1  CCTCCATGAGGTAATA-TGAGTCTTTTTGAACTGGGGGCATACTGACTAA  299
      ||||||||| |||||| |||||| ||||||||| | ||||||||||||||
seq2  CCTCCATGAAGTAATATTGAGTC-TTTTGAACT-GAGGCATACTGACTAA  256

seq1  ACATGTGGCTGATGTCGACTTTTAATGCTGTCTTTTAACATTGTCTTGGT  349
      |||||| |||||||||||| |||||||||||||||||||| |||||| ||
seq2  ACATGT-GCTGATGTCGAC-TTTAATGCTGTCTTTTAACA-TGTCTT-GT  302

seq1  GGAAAGAAGGCTATGCAAAAGCTTTAAGGGGGAAAAAATGTTTTGCAAAC  399
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  GGAAAGAAGGCTATGCAAAAGCTTTAA-GGGGAAAAAATG-TTTGCAAAC  350

seq1  ATTTAAGCCTGGTTAAAATCAAATCACATAAAGACCAAATCTCCATTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCCTGGTTAAAATCAAATCACATAAAGACCAAATCTCCATTTAA  400

seq1  AAGTTGCAGTGTTCTTTGTAAGTGCCAGGATTTAGTATTCTCAGAGGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCAGTGTTCTTTGTAAGTGCCAGGATTTAGTATTCTCAGAGGTGG  450

seq1  CTTAAGATTTTACTTACATCGGCTGTCTTTTGTAGGTGACGAAACGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATTTTACTTACATCGGCTGTCTTTTGTAGGTGACGAAACGGGAG  500

seq1  GGGGCGTGTCCAAACACTATTATGAGATGATCCTTTCTGTTTTTCTAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGTCCAAACACTATTATGAGATGATCCTTTCTGTTTTTCTAATG  550

seq1  GGATTGTGCCGAGAGGAATTGTTTTTGCTGTTTTAAATGTTTGCATTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGCCGAGAGGAATTGTTTTTGCTGTTTTAAATGTTTGCATTGCT  600

seq1  TTAAGTTTTTATAAGCAGATGTTTCCAGTTGTTAGTGAAGACATTCAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTTATAAGCAGATGTTTCCAGTTGTTAGTGAAGACATTCAACT  650

seq1  CCTGTTAGTCCTTATTCTGACTAGTTTCTTCTTCATTGTTAATGTCTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGTCCTTATTCTGACTAGTTTCTTCTTCATTGTTAATGTCTGCT  700

seq1  CCAAGTACTTTGTCACGGAGCTCCTCCTATTTAAAAGATTTATTATGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTACTTTGTCACGGAGCTCCTCCTATTTAAAAGATTTATTATGAAA  750

seq1  TAAAATCCCATTGCTTCTTTTAATATTGCCTGACAAGTAGAATTACATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCCATTGCTTCTTTTAATATTGCCTGACAAGTAGAATTACATCT  800

seq1  TTAATCATTTATTATTAATATACTTACTAAAAGCACAGTAGATAAAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATTTATTATTAATATACTTACTAAAAGCACAGTAGATAAAACTT  850

seq1  AGTTTTATTACTATGAAAAAGTAATAATAAATAATGTTTTTAAAAGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTACTATGAAAAAGTAATAATAAATAATGTTTTTAAAAGTTTC  900

seq1  ATTATTATCAATGTGACTCTCTCAAAAATTGCATAATCAGTTTAACAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCAATGTGACTCTCTCAAAAATTGCATAATCAGTTTAACAAAC  950

seq1  ACATTGATGAGTTACTGCAGTATGTGGTTAGAAACACTGCCGGGTGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGATGAGTTACTGCAGTATGTGGTTAGAAACACTGCCGGGTGAATT  1000

seq1  TCATCAACTTACAAACTATGTGAAACTTGGTTTCATATCATAAATAGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACTTACAAACTATGTGAAACTTGGTTTCATATCATAAATAGGAA  1050

seq1  TATTTAAACTTCTATGAGTAAGAATAATCAAAAGGAGTCCCTCCTACACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACTTCTATGAGTAAGAATAATCAAAAGGAGTCCCTCCTACACT  1100

seq1  ACTGTGTCTGCTGTCTTTTTTTCTGGGAGGGAAAGGGGGGGGGCAGTTTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTGCTGTCTTTTTTTCTGGGAGGGAAAGGGGGGGGGCAGTTTT  1150

seq1  GTTCATATCTGTAATTATACAGCCATCAACCAGACATAAGTCTTGTCTTT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATCTGTAATTATACAGCCATCAACCAGACATAAGTCTTGTCTTT  1200

seq1  GAAAATTGCCATGTCCTGGCAGATTTCACCTAGGTGAATTC  1290
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGCCATGTCCTGGCAGATTTCACCTAGGTGAATTC  1241

seq1: chr8_46860303_46861383
seq2: B6Ng01-059D19.g_67_1128

seq1  GAATTCCAGTGCTATTCACAGGAAACATGGTCAAGCATGCTGTGTGCGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCTATTCACAGGAAACATGGTCAAGCATGCTGTGTGCGTT  50

seq1  ATTTCTTGTCACGCTACAATCAAGGAAGCCAGGTCACCAGGTGGTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTCACGCTACAATCAAGGAAGCCAGGTCACCAGGTGGTTAAAA  100

seq1  CTGGCAAAGCTTCACAGAGCATGCTGCCACTTTAAACTCAGACACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAGCTTCACAGAGCATGCTGCCACTTTAAACTCAGACACACATG  150

seq1  TCATTAGGTACCCAGGGATCTACAACAAGTCACTATCCATGCGTCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGTACCCAGGGATCTACAACAAGTCACTATCCATGCGTCTACAA  200

seq1  ACCTCTTTTGTGAGTTTTTGCAGCCATCGTCATGCTTGTGAAGGTAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTGTGAGTTTTTGCAGCCATCGTCATGCTTGTGAAGGTAGAGT  250

seq1  GAAGGTGAACTATAAGGAGTAGTTTACTCTAAATCATTTATATAAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAACTATAAGGAGTAGTTTACTCTAAATCATTTATATAAAATTA  300

seq1  AACAGATATAGTAATTTCATACATTTTTAGCCAGAGAGCTGTTGTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATATAGTAATTTCATACATTTTTAGCCAGAGAGCTGTTGTGTGAG  350

seq1  GAGTTTTGTTGTTATTATTGTTATTGTTTTATTTTAATCTCTCAGTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGTTGTTATTATTGTTATTGTTTTATTTTAATCTCTCAGTGCTT  400

seq1  AGCAAGAAAAGGGCTTATTGATTAAGCCTGAAGATCTGAGCTCGATCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAAAGGGCTTATTGATTAAGCCTGAAGATCTGAGCTCGATCCCT  450

seq1  AGAACCTAAGGTGGAAGGAAAGCATTGATTTCCAACAGCTTTTCTTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTAAGGTGGAAGGAAAGCATTGATTTCCAACAGCTTTTCTTCTGC  500

seq1  ATGCACACATGCACACATGCATGCATGCACGTACGCACACAGATACACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACATGCACACATGCATGCATGCACGTACGCACACAGATACACTA  550

seq1  AGCCAGTACATTTCTGGTAAAACTAACGCTGGGAAATTGACCATGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTACATTTCTGGTAAAACTAACGCTGGGAAATTGACCATGGTGTA  600

seq1  TCTCACAGGGCTTTCAATGTGGGTTGCCATTCCTTTTCAGGCATGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGGCTTTCAATGTGGGTTGCCATTCCTTTTCAGGCATGACTGG  650

seq1  GACCCTCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGGAGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGGAGCCAAG  700

seq1  GAGTATTTTTGAATATGAGCCTGGGAAGTCGTCCATTCTGCAGCACGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTTGAATATGAGCCTGGGAAGTCGTCCATTCTGCAGCACGAAA  750

seq1  GACCCGTAAGCCCTTGTCATTGATCCAAAAGCCAGCTTGCTAGGCCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGTAAGCCCTTGTCATTGATCCAAAAGCCAGCTTGCTAGGCCACAG  800

seq1  GGTCCCCAAGCAAACCTGAATCTCATCCCATTTATTTGACATTGTCAAGA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTCCCCAAGCAAACCTGAATCTCATCCCATTTATTTGACATTGTC-AGA  849

seq1  AATGTTGTTTATTTTTAGCCATGTCTTGTGTATCTTGTTTCAGAATTGAA  900
      ||||||||||||||||||||||||||||||||||||| ||||| ||| ||
seq2  AATGTTGTTTATTTTTAGCCATGTCTTGTGTATCTTG-TTCAG-ATTTAA  897

seq1  AGAGGTACTTTAATAGCAGATAGATAGATAGATAGATAGATAGATAGATA  950
      |||||||||||||||||     ||||||||||||||||||||||||||||
seq2  AGAGGTACTTTAATAGC-----GATAGATAGATAGATAGATAGATAGATA  942

seq1  GATAGATAGATAGATAGATAGATAGATAGATACAGAGATGCAAGTATGCA  1000
      ||||||||||||||| ||| ||| ||| | |   ||||||||||||||||
seq2  GATAGATAGATAGAT-GAT-GAT-GAT-GTT--CGAGATGCAAGTATGCA  986

seq1  AGTCTCATTATCATTAGCTATAGCTGGCTGTGCCTAATCATAACACTCAT  1050
      ||||||| |||||||||||| |||||| |||||||||| |||||||||||
seq2  AGTCTCA-TATCATTAGCTA-AGCTGGTTGTGCCTAAT-ATAACACTCAT  1033

seq1  ACATGAAATGCTTAATTGCTAATCTATCTTG  1081
      ||||||||||| ||||||| |||| ||||||
seq2  ACATGAAATGC-TAATTGCAAATC-ATCTTG  1062