BAC Information

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BAC

Clone NameB6Ng01-059H02
Chromosome8 (Build37)
Map Location 87,224,951 - 87,365,754
singlet/doubletdoublet
Overlap geneLOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a
Upstream geneDdx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1
Downstream geneCalr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059H02.bB6Ng01-059H02.g
ACCDH880725DH880726
length2651,022
definitionDH880725|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H02, 5' end.DH880726|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,224,951 - 87,225,215)(87,364,715 - 87,365,754)
sequence
agaagatcactccagaatacctggcagtgagggataccacctagttgtgg
tatggctgagtagcatcttggggaacttgggagcaacttctgggaaactc
agatatggctttgacactcatctcacccgcctgggcttggaaatacgtta
gcagtgccacaggttcgggacacctgcacctcggtgtcaggacacggcaa
ggccacattaccagaattgtctccttccggagccctattcctgggtgtgt
gtgtggggggggggg
gaattcaaatattagccatcttggttaaaagtgggatggatctgttggac
tgacacctaggaaagctgagcaaagttcacagtagtggggtgcatgctgg
tagataatagtcaaagggactgactgagctcagggacagtgatctacttt
ccccaagggcccatggttctaggactgagctgataaagatagattccagg
attgggttatgtagttcagttggacacttagctagcatggcctgggttcc
atccccaccacaaggaaaagaagagactcattgttgagtctcaaggctgc
cttttatactctagtgtagtaggttgaagaatgggcaggaggaagcctgt
gttcttcacaagaaagttgtgatctagctttcaattctggagtctagact
caagtgaagggagggaggcaggccttggttaattgcctgatcattggtgt
ggatagaaacactgggcaaagcaagcatctaagaggatggtgatgttagt
tctgtttgagagtcccttaaatcaccctgatgaactgccctatcctgagt
ctgacattttcattactttttggtatgtgagggtggtctaaagcttcatg
aatactaccccttccccccacgaaaaatgtaggtaccttaagagttggtg
taagtaaggaaaatttatggaggggagaattacatatttaatataaaaga
accttgaaaatgtttggatgaataggtaggtcattgcaggattacaaaga
tgtgggggaactcatgaactagaagtgtaaatttattccaaaattaagat
ggtcttgaaaatggggtcacatagttgccctcctctacattgatgatggt
acttctaggcagtcctctgctaagattccttttatttgaccagacccaat
tgggtccttgaaataggcagaatgatgaaaattaactaggagcagaatct
acacaacaccttaaaactttaaagtcctagggcatttgtgggataatgga
catcacggttactaaaatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87224951_87225215
seq2: B6Ng01-059H02.b_53_317

seq1  AGAAGATCACTCCAGAATACCTGGCAGTGAGGGATACCACCTAGTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCACTCCAGAATACCTGGCAGTGAGGGATACCACCTAGTTGTGG  50

seq1  TATGGCTGAGTAGCATCTTGGGGAACTTGGGAGCAACTTCTGGGAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGAGTAGCATCTTGGGGAACTTGGGAGCAACTTCTGGGAAACTC  100

seq1  AGATATGGCTTTGACACTCATCTCACCCGCCTGGGCTTGGAAATACGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGCTTTGACACTCATCTCACCCGCCTGGGCTTGGAAATACGTTA  150

seq1  GCAGTGCCACAGGTTCGGGACACCTGCACCTCGGTGTCAGGACACGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCACAGGTTCGGGACACCTGCACCTCGGTGTCAGGACACGGCAA  200

seq1  GGCCACATTACCAGAATTGTCTCCTTCCGGAGCCCTATTCCTGGGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTACCAGAATTGTCTCCTTCCGGAGCCCTATTCCTGGGTGTGT  250

seq1  GTGTGGGGGGGGGGG  265
      |||||||||||||||
seq2  GTGTGGGGGGGGGGG  265

seq1: chr8_87364715_87365754
seq2: B6Ng01-059H02.g_69_1090 (reverse)

seq1  CATCATTTCTGCTAACAGTGATGT-CATTATACCCACAAAATGGCTCCTA  49
      |||||||| |  |||| ||||||| |||||| ||||| |||||   ||  
seq2  CATCATTT-TAGTAACCGTGATGTCCATTAT-CCCAC-AAATG---CCCT  44

seq1  AGGACTTTTAAAGTTTTTAAGGTGTTTGTTGTAGATTTCTGCTCCTAAGT  99
      ||||| ||||||| ||||||||||||   |||||| |||||||||| |||
seq2  AGGAC-TTTAAAG-TTTTAAGGTGTT--GTGTAGA-TTCTGCTCCT-AGT  88

seq1  TATTTTTCATACATTCTGCCTATTTCAAGTGACCCAATTTGGATCTGGTC  149
      || ||||||| |||||||||||||||||| ||||||| |||| |||||||
seq2  TAATTTTCAT-CATTCTGCCTATTTCAAG-GACCCAA-TTGGGTCTGGTC  135

seq1  AAAATAAAAGGAATCTTAGCAGAGGACTGCCTAGAAGTTACCATCAATCA  199
       |||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  -AAATAAAAGGAATCTTAGCAGAGGACTGCCTAGAAG-TACCATC-ATCA  182

seq1  ATGTAGAGGAGGGCAACTATGTGACCCCATTTTCAAGGACCATCTTAATT  249
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  ATGTAGAGGAGGGCAACTATGTGACCCCATTTTCAA-GACCATCTTAA-T  230

seq1  TTTGGAATAAATTTACACTTCTAGTTCATGAGTT-CCCCACATCTTTGTA  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTGGAATAAATTTACACTTCTAGTTCATGAGTTCCCCCACATCTTTGTA  280

seq1  ATCCTGCAATGACCTACCTATTCATCCAAACATTTTCAAGGTTCTTTTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCAATGACCTACCTATTCATCCAAACATTTTCAAGGTTCTTTTAT  330

seq1  ATTAAATATGTAATTCTCCCCTCCATAAATTTTCCTTACTTACACCAACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATGTAATTCTCCCCTCCATAAATTTTCCTTACTTACACCAACT  380

seq1  CTTAAGGTACCTACATTTTTCGTGGGGGGAAGGGGTAGTATTCATGAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGTACCTACATTTTTCGTGGGGGGAAGGGGTAGTATTCATGAAGC  430

seq1  TTTAGACCACCCTCACATACCAAAAAGTAATGAAAATGTCAGACTCAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCACCCTCACATACCAAAAAGTAATGAAAATGTCAGACTCAGGA  480

seq1  TAGGGCAGTTCATCAGGGTGATTTAAGGGACTCTCAAACAGAACTAACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGTTCATCAGGGTGATTTAAGGGACTCTCAAACAGAACTAACAT  530

seq1  CACCATCCTCTTAGATGCTTGCTTTGCCCAGTGTTTCTATCCACACCAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCTCTTAGATGCTTGCTTTGCCCAGTGTTTCTATCCACACCAAT  580

seq1  GATCAGGCAATTAACCAAGGCCTGCCTCCCTCCCTTCACTTGAGTCTAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCAATTAACCAAGGCCTGCCTCCCTCCCTTCACTTGAGTCTAGA  630

seq1  CTCCAGAATTGAAAGCTAGATCACAACTTTCTTGTGAAGAACACAGGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATTGAAAGCTAGATCACAACTTTCTTGTGAAGAACACAGGCTT  680

seq1  CCTCCTGCCCATTCTTCAACCTACTACACTAGAGTATAAAAGGCAGCCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCCATTCTTCAACCTACTACACTAGAGTATAAAAGGCAGCCTT  730

seq1  GAGACTCAACAATGAGTCTCTTCTTTTCCTTGTGGTGGGGATGGAACCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAACAATGAGTCTCTTCTTTTCCTTGTGGTGGGGATGGAACCCA  780

seq1  GGCCATGCTAGCTAAGTGTCCAACTGAACTACATAACCCAATCCTGGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCTAGCTAAGTGTCCAACTGAACTACATAACCCAATCCTGGAAT  830

seq1  CTATCTTTATCAGCTCAGTCCTAGAACCATGGGCCCTTGGGGAAAGTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTATCAGCTCAGTCCTAGAACCATGGGCCCTTGGGGAAAGTAGA  880

seq1  TCACTGTCCCTGAGCTCAGTCAGTCCCTTTGACTATTATCTACCAGCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCCCTGAGCTCAGTCAGTCCCTTTGACTATTATCTACCAGCATG  930

seq1  CACCCCACTACTGTGAACTTTGCTCAGCTTTCCTAGGTGTCAGTCCAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTACTGTGAACTTTGCTCAGCTTTCCTAGGTGTCAGTCCAACA  980

seq1  GATCCATCCCACTTTTAACCAAGATGGCTAATATTTGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCCCACTTTTAACCAAGATGGCTAATATTTGAATTC  1022