BAC Information

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BAC

Clone NameB6Ng01-059L24
Chromosome8 (Build37)
Map Location 86,994,831 - 87,144,705
singlet/doubletdoublet
Overlap geneCacna1a
Upstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059L24.bB6Ng01-059L24.g
ACCDH880931DH880932
length1,1671,035
definitionDH880931|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L24, 5' end.DH880932|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,143,505 - 87,144,705)(86,994,831 - 86,995,996)
sequence
gaattcctggcttggaagggatcttccagggttggctgtgaatgtaccgc
agaggtgaccactcagccagccccttgcccctttatatttctaccagcat
gaaagacagacctaagaccatgagaggaggtgacctcagacagagacctg
gagtggccagcagagcatggtggccatgcctttaatctcagaaggcatag
gcaggtggacctctgccagtcgagtccagctgtgagttctaagatagcca
gagctacacagagaccgagacaaataaatgagcaatagcagcaaggacaa
cctgattcaaagtccagctggatgtggtggccatgtctttaatgccagca
ctcaagaagcaacaccagtcacatctctgtgagggttttgttgttgtttt
gtttttttgagatagggtttctttgtgtagctctggaacttgctctgtag
accaggctggcctcaaactcacagaaatctgcctgcttttttctctgtaa
tactgagagtaaaggcatacagcaccactgtctggtggatctctgtgagt
taaggctagcctgggggtacaagatcgagctccaagccatctagggctgc
agagtaagagcctgtcagagagagagagagagagagagagagagagagag
agagagagagagagagagaggcaggcagacagacagagacacagagagac
agagacagacagacagacagacagacagacagagacagaaagaaagaaaa
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagagattctaccagttaacatagaatgtga
aactgtcaggaagaaacaagaggggagggaggccggatagattgctcatg
gtatgcacacttaaagctcctgcaaaggacccagtttggttcctagcacc
tatactgggcacgcacaactacctgtactccaatcctcaggcacctgact
tcctctgacactaggcacacatatggggtacagctatattcaagcacaaa
tcatacacataaataacatagggatcttttgaaaatgttaaaaataaagc
aatcataaagagggaggggagtcattgggaggcccgcctggtgcacccaa
tccatccttcctcccta
gaattcaggaaatggcacatggcattgaatcaagtccctgggccttcatg
agtgagcactggaggattgtaaggggaactctgcacagtgggtggcaaag
ctctgcatgccttattcaaaccacaggagtttgggcagccttccttttcc
atgtgccactttgtaaggcgagggccttactgtgaatatttgtcagtcca
gctcccaggaagctgagacaggaggaacctgactttgacaccaggatagg
tcatacccaggcaagctaccgtcttgctgaccataacacttccatgtcct
tcatctacatctctccagcatcatacagtctggacagcccatgtgcctga
tgcctaaccattcacaggactagctcatgaactgaatagtatgcgcacat
gctcctcctgcccagggaggggactgggactttaacagaacaagaactac
ttcccaaactaatcctggctgtggggttttcttgccaaagtgtcaggtta
actgatagggaaagctggaagaagccgtttcagcacgctggacagcacca
tggcttctgcctagggaggacctgacaggggctggtgaccttgctcagcc
ttgagctggcttgcccatctcctctgtgggactggagaagacgttgttgt
ctgtctgtctacagggctggggctttcctcctgaacttctgtgttaaatg
ccagtatgcctcacttggagcatctggccagtgtccctgcggtttgccgg
cagtgatttctctcctctccccagggcagggaggcagctgaggcagacac
aggaaatagtggaacaggaaggaagaggggttgttgactgggcaaggttg
ccatgccagggactctgtgcactgtcaccgtcagaggtgctgggaagctg
gtgaccttctctcgttgtgggaaggatctagtcctgactcagagacaaag
ggctcactgggggcaggctgtgttccaaggcctatctgaggttggagaag
gtcaaggaaatgaaaataccgcattcttctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87143505_87144705
seq2: B6Ng01-059L24.b_51_1217 (reverse)

seq1  TAGGGAGGAATGGACCAGGACTTGGTGTGCACCAGGCAGGCACTCTACCA  50
      |||||||||| |||   ||| |||| ||||||||||| |||   || |||
seq2  TAGGGAGGAA-GGA--TGGA-TTGG-GTGCACCAGGCGGGC---CTCCCA  42

seq1  ACTGAACATCCCCTTCCCTCTCTTTTGTATTGCTTTATTTTTTAAACATT  100
      | |||   ||||| ||||||| || || ||||||||||||||  |||| |
seq2  A-TGA--CTCCCC-TCCCTCT-TTATG-ATTGCTTTATTTTT--AACA-T  83

seq1  TTTAAAAAGATCCACTTATTGTTATTTTATGTGTATGAATTGGTGCTTGA  150
      ||| ||||||||| ||   ||||| |||||||||||| ||| ||||||||
seq2  TTTCAAAAGATCC-CT--ATGTTA-TTTATGTGTATG-ATTTGTGCTTGA  128

seq1  ATGTAGGCCTGTACACCATATGTGTGCCTAGTGTCAGAGGAAGTCAGGTG  200
      || |||  |||||| |||||||||||||||||||||||||||||||||||
seq2  ATATAG--CTGTACCCCATATGTGTGCCTAGTGTCAGAGGAAGTCAGGTG  176

seq1  CCTGAGGAATTGGAGTTACAGGTAGTTGTGCGTTGCCCAGTATAGGTGCT  250
      ||||||| ||||||| |||||||||||||||| |||||||||||||||||
seq2  CCTGAGG-ATTGGAG-TACAGGTAGTTGTGCG-TGCCCAGTATAGGTGCT  223

seq1  AGGAACCAAAACTGGGTCCTTTGCAGGAGCTTTAAGTGTGCATAACCACT  300
      ||||||| ||||||||||||||||||||||||||||||||||| |||| |
seq2  AGGAACC-AAACTGGGTCCTTTGCAGGAGCTTTAAGTGTGCAT-ACCA-T  270

seq1  GAGCAATCTATCCGG-CTCCCTCCCCTCTTTGTTTCTTCCTGACAGTTTC  349
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GAGCAATCTATCCGGCCTCCCTCCCCTC-TTGTTTCTTCCTGACAGTTTC  319

seq1  ACATTCTATGTTAACTGGTAGAATCTCTTTCTTTCTTTCTTTCTTTCTTT  399
      |||||||||||||||||||||||||    |||||||||||||||||||||
seq2  ACATTCTATGTTAACTGGTAGAATC----TCTTTCTTTCTTTCTTTCTTT  365

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  415

seq1  TTTTTTCTTTCTTTCTGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCTTTCTGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT  465

seq1  CTGTCTCTCTGTGTCTCTGTCTGTCTGCCTGCCTCTCTCTCTCTCTCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTGTGTCTCTGTCTGTCTGCCTGCCTCTCTCTCTCTCTCTCT  515

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACAGGCTCTTACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACAGGCTCTTACT  565

seq1  CTGCAGCCCTAGATGGCTTGGAGCTCGATCTTGTACCCCCAGGCTAGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCCTAGATGGCTTGGAGCTCGATCTTGTACCCCCAGGCTAGCCT  615

seq1  TAACTCACAGAGATCCACCAGACAGTGGTGCTGTATGCCTTTACTCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACAGAGATCCACCAGACAGTGGTGCTGTATGCCTTTACTCTCAG  665

seq1  TATTACAGAGAAAAAAGCAGGCAGATTTCTGTGAGTTTGAGGCCAGCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGAGAAAAAAGCAGGCAGATTTCTGTGAGTTTGAGGCCAGCCTG  715

seq1  GTCTACAGAGCAAGTTCCAGAGCTACACAAAGAAACCCTATCTCAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGCAAGTTCCAGAGCTACACAAAGAAACCCTATCTCAAAAAA  765

seq1  ACAAAACAACAACAAAACCCTCACAGAGATGTGACTGGTGTTGCTTCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAACAACAAAACCCTCACAGAGATGTGACTGGTGTTGCTTCTTG  815

seq1  AGTGCTGGCATTAAAGACATGGCCACCACATCCAGCTGGACTTTGAATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGCATTAAAGACATGGCCACCACATCCAGCTGGACTTTGAATCA  865

seq1  GGTTGTCCTTGCTGCTATTGCTCATTTATTTGTCTCGGTCTCTGTGTAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCCTTGCTGCTATTGCTCATTTATTTGTCTCGGTCTCTGTGTAGC  915

seq1  TCTGGCTATCTTAGAACTCACAGCTGGACTCGACTGGCAGAGGTCCACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTATCTTAGAACTCACAGCTGGACTCGACTGGCAGAGGTCCACCT  965

seq1  GCCTATGCCTTCTGAGATTAAAGGCATGGCCACCATGCTCTGCTGGCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGCCTTCTGAGATTAAAGGCATGGCCACCATGCTCTGCTGGCCAC  1015

seq1  TCCAGGTCTCTGTCTGAGGTCACCTCCTCTCATGGTCTTAGGTCTGTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCTCTGTCTGAGGTCACCTCCTCTCATGGTCTTAGGTCTGTCTT  1065

seq1  TCATGCTGGTAGAAATATAAAGGGGCAAGGGGCTGGCTGAGTGGTCACCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGGTAGAAATATAAAGGGGCAAGGGGCTGGCTGAGTGGTCACCT  1115

seq1  CTGCGGTACATTCACAGCCAACCCTGGAAGATCCCTTCCAAGCCAGGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTACATTCACAGCCAACCCTGGAAGATCCCTTCCAAGCCAGGAAT  1165

seq1  TC  1201
      ||
seq2  TC  1167

seq1: chr8_86994831_86995996
seq2: B6Ng01-059L24.g_67_1101

seq1  GAATTCAGGAAATGGCACATGGCATTGAATCAAGTCCCTGGGCCTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAATGGCACATGGCATTGAATCAAGTCCCTGGGCCTTCATG  50

seq1  AGTGAGCACTGGAGGATTGTAAGGGGAACTCTGCACAGTGGGTGGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACTGGAGGATTGTAAGGGGAACTCTGCACAGTGGGTGGCAAAG  100

seq1  CTCTGCATGCCTTATTCAAACCACAGGAGTTTGGGCAGCCTTCCTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGCCTTATTCAAACCACAGGAGTTTGGGCAGCCTTCCTTTTCC  150

seq1  ATGTGCCACTTTGTAAGGCGAGGGCCTTACTGTGAATATTTGTCAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACTTTGTAAGGCGAGGGCCTTACTGTGAATATTTGTCAGTCCA  200

seq1  GCTCCCAGGAAGCTGAGACAGGAGGAACCTGACTTTGACACCAGGATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGGAAGCTGAGACAGGAGGAACCTGACTTTGACACCAGGATAGG  250

seq1  TCATACCCAGGCAAGCTACCGTCTTGCTGACCATAACACTTCCATGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCCAGGCAAGCTACCGTCTTGCTGACCATAACACTTCCATGTCCT  300

seq1  TCATCTACATCTCTCCAGCATCATACAGTCTGGACAGCCCATGTGCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACATCTCTCCAGCATCATACAGTCTGGACAGCCCATGTGCCTGA  350

seq1  TGCCTAACCATTCACAGGACTAGCTCATGAACTGAATAGTATGCGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACCATTCACAGGACTAGCTCATGAACTGAATAGTATGCGCACAT  400

seq1  GCTCCTCCTGCCCAGGGAGGGGACTGGGACTTTAACAGAACAAGAACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCTGCCCAGGGAGGGGACTGGGACTTTAACAGAACAAGAACTAC  450

seq1  TTCCCAAACTAATCCTGGCTGTGGGGTTTTCTTGCCAAAGTGTCAGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACTAATCCTGGCTGTGGGGTTTTCTTGCCAAAGTGTCAGGTTA  500

seq1  ACTGATAGGGAAAGCTGGAAGAAGCCGTTTCAGCACGCTGGACAGCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAGGGAAAGCTGGAAGAAGCCGTTTCAGCACGCTGGACAGCACCA  550

seq1  TGGCTTCTGCCTAGGGAGGACCTGACAGGGGCTGGTGACCTTGCTCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGCCTAGGGAGGACCTGACAGGGGCTGGTGACCTTGCTCAGCC  600

seq1  TTGAGCTGGCTTGCCCATCTCCTCTGTGGGACTGGAGAAGACGTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGGCTTGCCCATCTCCTCTGTGGGACTGGAGAAGACGTTGTTGT  650

seq1  CTGTCTGTCTACAGGGCTGGGGCTTTCCTCCTGAACTTCTGTGTTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTACAGGGCTGGGGCTTTCCTCCTGAACTTCTGTGTTAAATG  700

seq1  CCAGTATGCCTCACTTGGAGCATCTGGCCAGTGTCCCTGCGGTTTGCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATGCCTCACTTGGAGCATCTGGCCAGTGTCCCTGCGGTTTGCCGG  750

seq1  CAGTGATTTCTCTCCTCTCCCCAGGGCAGGGAGGCAGCTGAGGCAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTTCTCTCCTCTCCCCAGGGCAGGGAGGCAGCTGAGGCAGACAC  800

seq1  AGGAAATAGTGGAACAGGAAGGAAGAGGGGTTGTTGACTGGGCAAGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGTGGAACAGGAAGGAAGAGGGGTTGTTGACTGGGCAAGGTTG  850

seq1  CCATGCCAGGGACTCTGTGCACTGTCACAGTCAGAGGTGCTGGGAAGCTG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCATGCCAGGGACTCTGTGCACTGTCACCGTCAGAGGTGCTGGGAAGCTG  900

seq1  GTGACCTTCTCTCGTTGTGGGAAGGATCTAGTCCTGACTCAGAGACAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGACCTTCTCTCGTTGTGGGAAGGATCTAGTCCTGACTCAGAGACA-AA  949

seq1  GGCGCTCACCTGGGGGCAGGGCTGTGGTTCCAAGGCCTATCTGAGGTTGG  1000
      || ||||| ||||||||| |||||| ||||||||||||||||||||||||
seq2  GG-GCTCA-CTGGGGGCA-GGCTGT-GTTCCAAGGCCTATCTGAGGTTGG  995

seq1  GAGAGGTCTAGGAAATGAAAATCACCGTCATCTCTTTCTCCTCCCTCCTC  1050
         ||||| ||||||||||||| |||| ||| || |||||||||      
seq2  AGAAGGTCAAGGAAATGAAAAT-ACCG-CAT-TC-TTCTCCTCC------  1035

seq1  CCTTCCCTCTTCCTCCCCATCTTCCTCATCTTTCTTTTCCCTTTTTCCTC  1100
                                                        
seq2  --------------------------------------------------  1035

seq1  TTCCTCCTCTCTCCCCCCTCCTCCCCTTCCTTCTCTTCCTCTCCTCTCAC  1150
                                                        
seq2  --------------------------------------------------  1035

seq1  CTCTTTCTTCTCCTCC  1166
                      
seq2  ----------------  1035