BAC Information

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BAC

Clone NameB6Ng01-059N11
Chromosome8 (Build37)
Map Location 27,253,440 - 27,406,141
singlet/doubletdoublet
Overlap geneRnf170, Thap1
Upstream geneTacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik
Downstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059N11.bB6Ng01-059N11.g
ACCDH880999DH881000
length7481,047
definitionDH880999|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N11, 5' end.DH881000|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,405,394 - 27,406,141)(27,253,440 - 27,254,494)
sequence
gaattctccactctccattacagtttcacaatggagcccaagtcgaaatt
gtcttctgggctaaccagcataagtcttcctatccatttggtcttgttcc
ctctgtaacctgaacattgccaaggttagagcctccagagtgtttctctg
caaactttcaattctgataagtctacagctgatgcgcagatcacaaccct
agtagcttgaaacaccagaaatgagtgttggaggtcagaaatcagagtgt
aaggagtctgcagggctttgccccggacccactccctcccccaggagcta
tagagaggagccccttgggtgtatcctccaaacttctggcttggcttggc
tttccacccctctgggtaacttcttcacgttcctttctctctctgagcac
ctgtctcaaagctgcctgatgcaagcttactcactggcttgcatttgggg
gaaacccaaaaagtacaacatagcttttctaggtttcctaggacttttaa
cagattctgagggttgaccctggaggggccaccattcagccactgcctct
gcttaccctgccttgtccatgccccgtgtttccctgcccccgaggaagct
ttgctatttcttcttgagttgaaccatgaaaggcatctgtgatttttctt
ctgtctccaaagtatccttagttatcacagatccagcacatttgcctaag
agtagctgcgtgaagttggttggttggttggttggttgttttgttgtg
gaattctctggagtcaggttttcataacacagttttccttccctggaaca
gtttcggtgcttctaagctaaagctccaggaagaacactcgtcacagcct
ttatcaatctcgagggtatacttgcaaatgaagttaagagtggcatgcat
catagaaaactgtggccactcatcaccaacttgggaagctattgagtagg
ggagctcgttgccagcctgggaaaacattttccaccttttaaaaatgcaa
tgtggactatagctatggtttactgaaatgattttattttctgtgcatgt
gttctgctgcaaatgtcatccttctgtaatatttggacttactctaatat
ctgagaagaggtgtactgtacaaaattttgtaacatacaaaaccactgta
tggctaaagtcttactgagccaaaaagggaacacagcggtatctccgaat
tttacacctactgttccctcatctttacggatcattagtgatgaatgcag
cagcaatttgagaaagtcttcaaagcaagtagagtctatcagtgctttaa
acatcatagaaagactttgtattccgaggtcatataaatcaaagcaacaa
gctttttaaacaaaacagagtaactgtcacaaaagcaatggtacaagccc
aggaacaaacaatactttgagtggctctgtggggaatgagaagggaactg
ttccattaaccactcactagagtagggtttctccagctccattctcagtt
gtgaagggcagcagagttcctgggccccatggctgtacagacgcctacct
cacagagtctgtgcacaggagagagcggaggcgtctcacaagctttgtga
tctggagagtttgttcagcatttattctttggaataaaaatagtttatct
aaaagtttttatgtgttatgtttctatttctttgttactttaaatgtaca
agtctggaagacactgactgacataaaacattcacagtggctttaaatat
tttgcacataacattttacttttactatgggccatgtactatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_27405394_27406141
seq2: B6Ng01-059N11.b_49_796 (reverse)

seq1  CACAACAAAACAACCAACCAACCAACCAACCAACTTCACGCAGCTACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAACAACCAACCAACCAACCAACCAACTTCACGCAGCTACTCT  50

seq1  TAGGCAAATGTGCTGGATCTGTGATAACTAAGGATACTTTGGAGACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAATGTGCTGGATCTGTGATAACTAAGGATACTTTGGAGACAGAA  100

seq1  GAAAAATCACAGATGCCTTTCATGGTTCAACTCAAGAAGAAATAGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCACAGATGCCTTTCATGGTTCAACTCAAGAAGAAATAGCAAAG  150

seq1  CTTCCTCGGGGGCAGGGAAACACGGGGCATGGACAAGGCAGGGTAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCGGGGGCAGGGAAACACGGGGCATGGACAAGGCAGGGTAAGCAG  200

seq1  AGGCAGTGGCTGAATGGTGGCCCCTCCAGGGTCAACCCTCAGAATCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGGCTGAATGGTGGCCCCTCCAGGGTCAACCCTCAGAATCTGTT  250

seq1  AAAAGTCCTAGGAAACCTAGAAAAGCTATGTTGTACTTTTTGGGTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCTAGGAAACCTAGAAAAGCTATGTTGTACTTTTTGGGTTTCCC  300

seq1  CCAAATGCAAGCCAGTGAGTAAGCTTGCATCAGGCAGCTTTGAGACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCAAGCCAGTGAGTAAGCTTGCATCAGGCAGCTTTGAGACAGGT  350

seq1  GCTCAGAGAGAGAAAGGAACGTGAAGAAGTTACCCAGAGGGGTGGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGAGAGAAAGGAACGTGAAGAAGTTACCCAGAGGGGTGGAAAGC  400

seq1  CAAGCCAAGCCAGAAGTTTGGAGGATACACCCAAGGGGCTCCTCTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGCCAGAAGTTTGGAGGATACACCCAAGGGGCTCCTCTCTATA  450

seq1  GCTCCTGGGGGAGGGAGTGGGTCCGGGGCAAAGCCCTGCAGACTCCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGGGAGGGAGTGGGTCCGGGGCAAAGCCCTGCAGACTCCTTAC  500

seq1  ACTCTGATTTCTGACCTCCAACACTCATTTCTGGTGTTTCAAGCTACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATTTCTGACCTCCAACACTCATTTCTGGTGTTTCAAGCTACTAG  550

seq1  GGTTGTGATCTGCGCATCAGCTGTAGACTTATCAGAATTGAAAGTTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATCTGCGCATCAGCTGTAGACTTATCAGAATTGAAAGTTTGCA  600

seq1  GAGAAACACTCTGGAGGCTCTAACCTTGGCAATGTTCAGGTTACAGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACACTCTGGAGGCTCTAACCTTGGCAATGTTCAGGTTACAGAGGG  650

seq1  AACAAGACCAAATGGATAGGAAGACTTATGCTGGTTAGCCCAGAAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACCAAATGGATAGGAAGACTTATGCTGGTTAGCCCAGAAGACAA  700

seq1  TTTCGACTTGGGCTCCATTGTGAAACTGTAATGGAGAGTGGAGAATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGACTTGGGCTCCATTGTGAAACTGTAATGGAGAGTGGAGAATTC  748

seq1: chr8_27253440_27254494
seq2: B6Ng01-059N11.g_68_1114

seq1  GAATTCTCTGGAGTCAGGTTTTCATAACACAGTTTTCCTTCCCTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGTCAGGTTTTCATAACACAGTTTTCCTTCCCTGGAACA  50

seq1  GTTTCGGTGCTTCTAAGCTAAAGCTCCAGGAAGAACACTCGTCACAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGGTGCTTCTAAGCTAAAGCTCCAGGAAGAACACTCGTCACAGCCT  100

seq1  TTATCAATCTCGAGGGTATACTTGCAAATGAAGTTAAGAGTGGCATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATCTCGAGGGTATACTTGCAAATGAAGTTAAGAGTGGCATGCAT  150

seq1  CATAGAAAACTGTGGCCACTCATCACCAACTTGGGAAGCTATTGAGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAACTGTGGCCACTCATCACCAACTTGGGAAGCTATTGAGTAGG  200

seq1  GGAGCTCGTTGCCAGCCTGGGAAAACATTTTCCACCTTTTAAAAATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCGTTGCCAGCCTGGGAAAACATTTTCCACCTTTTAAAAATGCAA  250

seq1  TGTGGACTATAGCTATGGTTTACTGAAATGATTTTATTTTCTGTGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTATAGCTATGGTTTACTGAAATGATTTTATTTTCTGTGCATGT  300

seq1  GTTCTGCTGCAAATGTCATCCTTCTGTAATATTTGGACTTACTCTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTGCAAATGTCATCCTTCTGTAATATTTGGACTTACTCTAATAT  350

seq1  CTGAGAAGAGGTGTACTGTACAAAATTTTGTAACATACAAAACCACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGAGGTGTACTGTACAAAATTTTGTAACATACAAAACCACTGTA  400

seq1  TGGCTAAAGTCTTACTGAGCCAAAAAGGGAACACAGCGGTATCTCCGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAGTCTTACTGAGCCAAAAAGGGAACACAGCGGTATCTCCGAAT  450

seq1  TTTACACCTACTGTTCCCTCATCTTTACGGATCATTAGTGATGAATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCTACTGTTCCCTCATCTTTACGGATCATTAGTGATGAATGCAG  500

seq1  CAGCAATTTGAGAAAGTCTTCAAAGCAAGTAGAGTCTATCAGTGCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTTGAGAAAGTCTTCAAAGCAAGTAGAGTCTATCAGTGCTTTAA  550

seq1  ACATCATAGAAAGACTTTGTATTCCGAGGTCATATAAATCAAAGCAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAGAAAGACTTTGTATTCCGAGGTCATATAAATCAAAGCAACAA  600

seq1  GCTTTTTAAACAAAACAGAGTAACTGTCACAAAAGCAATGGTACAAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAACAAAACAGAGTAACTGTCACAAAAGCAATGGTACAAGCCC  650

seq1  AGGAACAAACAATACTTTGAGTGGCTCTGTGGGGAATGAGAAGGGAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAACAATACTTTGAGTGGCTCTGTGGGGAATGAGAAGGGAACTG  700

seq1  TTCCATTAACCACTCACTAGAGTAGGGTTTCTCCAGCTCCATTCTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAACCACTCACTAGAGTAGGGTTTCTCCAGCTCCATTCTCAGTT  750

seq1  GTGAAGGGCAGCAGAGTTCCTGGGCCCCATGGCTGTACAGACGCCTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGCAGCAGAGTTCCTGGGCCCCATGGCTGTACAGACGCCTACCT  800

seq1  CACAGAGTCTGTGCACAGGAGAGAGCGGAGGCGTCTCACAAGCTTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCTGTGCACAGGAGAGAGCGGAGGCGTCTCACAAGCTTTGTGA  850

seq1  TCTGGAGAGTTTGTTCAGCATTTATTCTTTGGAATAAAAATAGTTTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGTTTGTTCAGCATTTATTCTTTGGAATAAAAATAGTTTATCT  900

seq1  AAAAGTTTTTAATGTGTTATGTTTCTATTTCTTTGTTTACTTTAAAATGT  950
      |||||||||| |||||||||||||||||||||||| ||||||| ||||||
seq2  AAAAGTTTTT-ATGTGTTATGTTTCTATTTCTTTG-TTACTTT-AAATGT  947

seq1  ACAAGTCTTGAAAGACCACTGACTGACATATAACATTCACAGTGGCTTTT  1000
      ||||||| || |||| |||||||||||||| ||||||||||||||| |||
seq2  ACAAGTC-TGGAAGA-CACTGACTGACATAAAACATTCACAGTGGC-TTT  994

seq1  AAATATTTTGCACATTAACATTTTACTTTTTACTATGGCCCATGTACTAT  1050
      |||||||||||||| ||||||||||| ||||||||||| |||||||||||
seq2  AAATATTTTGCACA-TAACATTTTAC-TTTTACTATGGGCCATGTACTAT  1042

seq1  ATATA  1055
      |||||
seq2  ATATA  1047