BAC Information

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BAC

Clone NameB6Ng01-060I09
Chromosome1 (Build37)8 (Build37)
Map Location 61,720,716 - 61,721,252102,837,481 - 102,838,081
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060I09.bB6Ng01-060I09.g
ACCDH881475DH881476
length9061,136
definitionDH881475|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I09, 5' end.DH881476|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,716 - 61,721,252)(102,837,481 - 102,838,081)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaccc
atccctgcatccctggaataaaacttacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttaatgagaactttattgaggatttttgc
atcaatattcataagagtaattggtctgaagttctctatctttgttggat
ctttctgtggtttagatatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttttttgaaggtctgatagaactctgcactaaacccttctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggagatatgggactgtttagatggtcaacttgattctgattcaactt
tggtacctggtatctgtccagaaatttatccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tctttaggatctgttgttatgtctcccttttcatttctgattttgttaat
tagggttttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgtttattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggtttatttcacccctgagtttgattat
ttcctgccatctattcctcttgggtgaattttgttccttttttttctaga
gctttt
gaattcagttagaaacaaagaatccatattgaatcagtcagcttggagag
gagtttgaaccagaacatctcacttgatctcaaaagctagagttcagaaa
gaactagaaagggtgagttattcaatctgaaacttctgggatgataatta
tataggtgaaataaatattacatttgtatctggtgcccagagtgattgga
gaagaagaaaacccagcaacatggaatgaaacaggagcctctaaggcaga
gaatcacagtaagcaatcccaacaaaccatgttacttatatatcctgact
ctttctgcatgaaaaaaaataaaacacttgatctcagttcccttaggagt
aggagataaggggatagaaatgttacttgaaaggccagttgcagtactta
ttgcaattgtgcatattggagcaaatgtctcccttcttttaactacaatc
cctactgttaaatttcctttccaaaaagggtgcggggccgaagattgact
gtacaacagggaaaattagctatgatagtacaaagacttgagagacaaaa
acagaggatttatgggaacaagaggtgattaattgtgaacttatggaacc
taatgaaattaaaaattaacataggcagcctatagaacctacattcacac
ctcttaatgaaattgaggagagatgaccacccctactaggtttctcagat
acctggaaaccaataccagaaaatactggaaattcacaaattgatcaaca
agtctgaaatttgttaaaacacaagatctcaaacactttaaagaatcaat
aataacttacagaatatgctcaccttatgtaagactgatatcaaatatct
ggtctaccctaaaaagaattttctcctaagaattaaaatagctgacatgg
tgtctaggagaagctgcaattgtgggacatttaatagtctaaagtattta
tattgtgaaagacaagttgtaagtgaaggtcagttttctgatttagacag
ctgatgcacttgatggctacatattatatacaaaactgtagcacactaac
tctttctggaagaacatttttatttcttattgagattttctaatttaaaa
ataagttccttccttcgcatggtactgaaaaccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720716_61721252
seq2: B6Ng01-060I09.b_45_581 (reverse)

seq1  ATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCAAGTTGACCATCTAAACAGTCCCATATCTCCTAAAGAAATAGAAGCA  50

seq1  GTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAG  100
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGAAGGGTTTAG  100

seq1  TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACA  150
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TGCAGAGTTCTATCAGACCTTCAAAAAAGATCTAATTCCAGTTCTGCACA  150

seq1  AACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT  200

seq1  GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGAT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGCCACTATTACTCTGATATCTAAACCACAGAAAGATCCAACAAAGAT  250

seq1  AGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCA  300
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AGAGAACTTCAGACCAATTACTCTTATGAATATTGATGCAAAAATCCTCA  300

seq1  ATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCAT  350
      ||||| |||||  |||| ||||||||||||||||||||||||||||||||
seq2  ATAAAGTTCTCATTAACTGAATCCAAGAACACATTAAAGCAATCATCCAT  350

seq1  CCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACG  400
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CCTGACCAAGTAAGTTTTATTCCAGGGATGCAGGGATGGGTTAATATACG  400

seq1  AAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACC  450

seq1  ACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACAC  500

seq1  CCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  537
      |||||||||||||||||||||||||||||||||||||
seq2  CCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  537

seq1: chr8_102837481_102838081
seq2: B6Ng01-060I09.g_621_1203

seq1  GAGGATTTATGGGAACAAGAGGTGATTAATTGTGAACTTATGGAACCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTATGGGAACAAGAGGTGATTAATTGTGAACTTATGGAACCTAA  50

seq1  TGAAATTAAAAATTAACATAGGCAGCCTATAGAACCTACATTCACACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAAAATTAACATAGGCAGCCTATAGAACCTACATTCACACCTC  100

seq1  TTAATGAAATTGAGGAGAGATGACCACCCCTACTAGGTTTCTCAGATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAATTGAGGAGAGATGACCACCCCTACTAGGTTTCTCAGATACC  150

seq1  TGGAAACCAATACCAGAAAATACTGGAAATTCACAAATTGATCAACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCAATACCAGAAAATACTGGAAATTCACAAATTGATCAACAAGT  200

seq1  CTGAAATTTGTTAAAACACAAGATCTCAAACACTTTAAAGAATCAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTGTTAAAACACAAGATCTCAAACACTTTAAAGAATCAATAAT  250

seq1  AACTTACAGAATATGCTCACCTTATGTAAGACTGATATCAAATATCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAGAATATGCTCACCTTATGTAAGACTGATATCAAATATCTGGT  300

seq1  CTACCCTAAAAAGAATTTTCTCCTAAGAATTAAAATAGCTGACATGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTAAAAAGAATTTTCTCCTAAGAATTAAAATAGCTGACATGGTGT  350

seq1  CTAGGAGAAGCTGCAATTGTGGAACATTTAATAGGTCTAAAGGTATTTAT  400
      |||||||||||||||||||||| |||||||||| ||||||| ||||||||
seq2  CTAGGAGAAGCTGCAATTGTGGGACATTTAATA-GTCTAAA-GTATTTAT  398

seq1  ATTGTGAAAGACAAGTTGTTAAGTGAAGGTCAGTTTTCTGATTTAAGACA  450
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  ATTGTGAAAGACAAGTTG-TAAGTGAAGGTCAGTTTTCTGATTT-AGACA  446

seq1  GCTGATGCAACTTGATGGCTAACATTATTATTATACAAAACATGTAGCAC  500
      |||||||| ||||||||||| ||| ||||| |||||||||| ||||||| 
seq2  GCTGATGC-ACTTGATGGCT-ACA-TATTA-TATACAAAAC-TGTAGCA-  490

seq1  CACTAACTCTTTCCTGGAAGAACA-TTTTATTTCCCTAATTGGAGTTTTT  549
      |||||||||||| ||||||||||| ||||||||  || ||| ||| ||||
seq2  CACTAACTCTTT-CTGGAAGAACATTTTTATTT--CTTATT-GAGATTTT  536

seq1  CTAATTTAGAAATCAGTTCCACTTCCATCAGCATGGTAACTGAAAAACCA  599
      |||||||| |||| |||||  ||||| || ||||||| |||| |||||||
seq2  CTAATTTAAAAATAAGTTC--CTTCCTTC-GCATGGT-ACTG-AAAACCA  581

seq1  AC  601
      ||
seq2  AC  583