BAC Information

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BAC

Clone NameB6Ng01-060K17
ChromosomeY (Build37)8 (Build37)
Map Location 1,120,708 - 1,121,081103,660,320 - 103,661,252
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060K17.bB6Ng01-060K17.g
ACCDH881577DH881578
length946932
definitionDH881577|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K17, 5' end.DH881578|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,708 - 1,121,081)(103,660,320 - 103,661,252)
sequence
gaattcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagctccggggtactggttagctcataatgttgttccacctatag
ggttgcagatccctttagctccttggctactttctctagctcctccattg
ggagccctatgatccatccattagctgactgtgagcatccacttctgtgt
ttgctgggccccggcatagtctcacaagagacagctacatctgcgtcctt
tcaataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctga
ttatggggtggatccctggctatggcagtctctacatggtccatcctttc
atctcagctccaaactccatctctgtaactccttccatgggtgttttgtt
cccaaatctaaggaggggcatagtgtccacacttcagtcttcattctcct
tgagtttcatgtgtttagcaaattatatcttatatcttgggtatcctagg
tttggggctaatatccacttatcagtgaatacatattgtgtgagtttctt
tgtgaatgtgttacctcactcaggatgatgccctccaggtccatccattt
ggctaggaatttcataaattcattctttttaatagctgagtagtactcca
ttgtgtagatgtaccacattttctgtatccattcctctgttgaggggcat
ctaggttctttccagcttctggctattataaataaggctgctatgaacat
agtggagcatgtgtccttcttacctgttggggcatcttctggatatatgc
ccaggagaggtattgctggatcctccggtagtactatgtccagttttctg
aggaaccgccagactgatttcagagtggttgtacaagcctgcactc
gaattcctgcatgtgcacatacgtgggtctctgtttcttgccttttctcc
tggttctatttcgtatgatttgtccaatgctgaggtgttaatttttttaa
tctaattttattttattattattccttagaagtctgtttgttttccaatg
agaaacagaaatgggttggatccagatgggaggagagatggagaagaact
tgggggagtggagtgagaagaaaatctaatcaaaatacattatgtgagag
aacacatattttcaataaaagttcaaaaattaaaaaaaaaagacaaatga
atccaattgatcaaattcatacctttcaatctctgcagatatgggctgaa
tgagggtgaaacagatcgtagctttgtaaaggtagatgctgtaagagaag
ctgcaccaagaatagaactttctcagtgcagttgtttgttttttaatgca
gttatttatctgtatcaaaacatctcattgttatacaaaattattatgaa
cttttccacaaaacacctgaccacatcaacgaattgcttagttattggtt
tatcttagggaataaagagatgatgtcactctatattatattattcaacc
caaaacttacaagctccaaatgatgagaaactaggcatgaatgtatatat
aaaacctccctggaattttctttatagtcgacatctatgtctgcacctgt
gcatataacctagtcatctaacatatcacacagacacacaaacacatatg
caactaagtgaacttcaattccagtgaacatagtgatgagtgtttattat
tttagtatatcttggagataaacagcaaattcagtttctgtacaacagaa
agatttaggttcatagaggctttacctcccttatattcacatgttcttag
aaagaattcgccttttttaacttcacctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120708_1121081
seq2: B6Ng01-060K17.b_48_421

seq1  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50

seq1  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100

seq1  CAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGG  150

seq1  TTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200

seq1  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250

seq1  GCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTC  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTC  300

seq1  AATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATT  350

seq1  ATGGGGTGGATCCCTGGCTATGGC  374
      ||||||||||||||||||||||||
seq2  ATGGGGTGGATCCCTGGCTATGGC  374

seq1: chr8_103660320_103661252
seq2: B6Ng01-060K17.g_69_1000

seq1  GAATTCCTGCATGTGCACATACGTGGGTCTCTGTTTCTTGCCTTTTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATGTGCACATACGTGGGTCTCTGTTTCTTGCCTTTTCTCC  50

seq1  TGGTTCTATTTCGTATGATTTGTCCAATGCTGAGGTGTTAATTTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTATTTCGTATGATTTGTCCAATGCTGAGGTGTTAATTTTTTTAA  100

seq1  TCTAATTTTATTTTATTATTATTCCTTAGAAGTCTGTTTGTTTTCCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTATTTTATTATTATTCCTTAGAAGTCTGTTTGTTTTCCAATG  150

seq1  AGAAACAGAAATGGGTTGGATCCAGATGGGAGGAGAGATGGAGAAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAATGGGTTGGATCCAGATGGGAGGAGAGATGGAGAAGAACT  200

seq1  TGGGGGAGTGGAGTGAGAAGAAAATCTAATCAAAATACATTATGTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGTGGAGTGAGAAGAAAATCTAATCAAAATACATTATGTGAGAG  250

seq1  AACACATATTTTCAATAAAAGTTCAAAAATTAAAAAAAAAAGACAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATTTTCAATAAAAGTTCAAAAATTAAAAAAAAAAGACAAATGA  300

seq1  ATCCAATTGATCAAATTCATACCTTTCAATCTCTGCAGATATGGGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTGATCAAATTCATACCTTTCAATCTCTGCAGATATGGGCTGAA  350

seq1  TGAGGGTGAAACAGATCGTAGCTTTGTAAAGGTAGATGCTGTAAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGAAACAGATCGTAGCTTTGTAAAGGTAGATGCTGTAAGAGAAG  400

seq1  CTGCACCAAGAATAGAACTTTCTCAGTGCAGTTGTTTGTTTTTTAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAAGAATAGAACTTTCTCAGTGCAGTTGTTTGTTTTTTAATGCA  450

seq1  GTTATTTATCTGTATCAAAACATCTCATTGTTATACAAAATTATTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTATCTGTATCAAAACATCTCATTGTTATACAAAATTATTATGAA  500

seq1  CTTTTCCACAAAACACCTGACCACATCAACGAATTGCTTAGTTATTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACAAAACACCTGACCACATCAACGAATTGCTTAGTTATTGGTT  550

seq1  TATCTTAGGGAATAAAGAGATGATGTCACTCTATATTATATTATTCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGGGAATAAAGAGATGATGTCACTCTATATTATATTATTCAACC  600

seq1  CAAAACTTACAAGCTCCAAATGATGAGAAACTA-GCATGAATGTATATAT  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAAAACTTACAAGCTCCAAATGATGAGAAACTAGGCATGAATGTATATAT  650

seq1  AAAACCTCCCTGGAATTTTCTTTATAGTCGACATCTATGTCTGCACCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCCCTGGAATTTTCTTTATAGTCGACATCTATGTCTGCACCTGT  700

seq1  GCATATAACCTAGTCATCTAACATATCACACAGACACACAAACACATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAACCTAGTCATCTAACATATCACACAGACACACAAACACATATG  750

seq1  CAACTAAGTGAACTTCAAATCCAGTGAACATAGTGATGAGTGTTTATTAT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAACTAAGTGAACTTCAATTCCAGTGAACATAGTGATGAGTGTTTATTAT  800

seq1  TTTAGTATATCTTGGAGATAAATCAGCATATTCAGTTTCTGTACAACAG-  848
      |||||||||||||||||||||| ||||| |||||||||||||||||||| 
seq2  TTTAGTATATCTTGGAGATAAA-CAGCAAATTCAGTTTCTGTACAACAGA  849

seq1  AAGATTTAGGTTCAATAGAAGCTTTA-CTCCCTTATATTCACATGTTCAT  897
      ||||||||||||| ||||| |||||| ||||||||||||||||||||| |
seq2  AAGATTTAGGTTC-ATAGAGGCTTTACCTCCCTTATATTCACATGTTCTT  898

seq1  AGAAAGATATTCAGCCTCTTTAAACTTCAGCTACTT  933
      ||||||| |||| |||| ||| ||||||| ||||||
seq2  AGAAAGA-ATTC-GCCTTTTTTAACTTCACCTACTT  932