BAC Information

Click to search

BAC

Clone NameB6Ng01-060P10
Chromosome8 (Build37)
Map Location 23,148,196 - 23,309,735
singlet/doubletdoublet
Overlap geneAtp7b, Alg11, Nek5, Nek3, Ckap2, Vps36
Upstream geneDefcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70
Downstream geneRpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060P10.bB6Ng01-060P10.g
ACCDH881783DH881784
length940454
definitionDH881783|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P10, 5' end.DH881784|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,308,796 - 23,309,735)(23,148,196 - 23,148,655)
sequence
gaattcagtatcactgcccccagcaggcagaggcagacagatcaactggt
ctatatatatatatatatagcaagttcaaggtcagactaggctagagagt
aagaccgtgtctcaaaacaaaatgaagacaaacgagagaaaacaaatgga
aactcttgactgggggtagcttaggttgttattcggtgatgaaacaagca
ctcggctgggtcaaggcgctaggtgcccattcgctcgaactcccaataca
cagatgactagacaaagcccagagcagatgctgaacgtgtctcttacatt
attcttctggtctctccaaatcagccggtgtgtactaagaagaagagtcc
cggcatcaaattttatctaaaacgataagattgttacaagaatatcagga
tcactccacattacccagatttccttactcgctaagcatacaatatgaaa
ttactaaacattttagaatgaggattatcacaaattaaaaagcaaagcta
tatgcttcataaatataagctatacatcataatatataattccataatat
atatatatatatatatatatatatatatatatatatatatatacacatac
atatatagtcattatagaattatggaaaattctatgaaaaatccataatc
tagatatataatcaggagtacttaaataaaatacatccttagtacagcac
acatgccaaagttaaataacaaggtagagctacatatgttatcatggaat
gctaagatagaactggtggggaaaaaggaacctgcaatatattacacaga
attaaatccttcaacaaaatgtgttttctatgtgtgtgtatacacatatc
tgtaaaagtaccaagaacatgctaaagtgagcgcacgggttaacagtgat
tatttcggggagggggtgaggacatgggtgggggaaaaga
tctggacatcagattcaacaggcaggaagatgaaaatgattgccacactc
aaagcatctcacacagggccaggggtacggctctgctttggggggagcgg
ggaaggaaaaaacggatctcatccaaattatcccaggtatccagacagac
aggtgttactctcttaatggtcccaatgtgggagaactgatgtctctatg
ttgagccactcaagcatacaggaatatacgcctatgcattagcacatacg
gtttgaggtttatctttaagtgttctaatgtttttaattatatattttga
aacttaaaaattttaatttaaaaaataaatgttatgtttgtgtgtgtatg
tggcttgtgtgtgtgcgtttgtgacgtgtgtgtgtgtgtgtgtgtgtgtg
gcttgtgtgtgtgcgtttgtgacgtgtgtgtgtgtgtgtgtggtgtgttg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23308796_23309735
seq2: B6Ng01-060P10.b_47_986 (reverse)

seq1  TCTTTCTCCCCCACCCATGTCCTCACCCCTTCCCCGAAATAATCACTGTT  50
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTT-TCCCCCACCCATGTCCTCACCCCCTCCCCGAAATAATCACTGTT  49

seq1  AA-CCGTGCGCTCACTTTAGCATGTTCTTGGTACTTTTACAGATATGTGT  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGTGCGCTCACTTTAGCATGTTCTTGGTACTTTTACAGATATGTGT  99

seq1  ATACACACACATAGAAAACACATTTTGTTGAAGGATTTAATTCTGTGTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACATAGAAAACACATTTTGTTGAAGGATTTAATTCTGTGTAA  149

seq1  TATATTGCAGGTTCCTTTTTCCCCACCAGTTCTATCTTAGCATTCCATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCAGGTTCCTTTTTCCCCACCAGTTCTATCTTAGCATTCCATGA  199

seq1  TAACATATGTAGCTCTACCTTGTTATTTAACTTTGGCATGTGTGCTGTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATGTAGCTCTACCTTGTTATTTAACTTTGGCATGTGTGCTGTAC  249

seq1  TAAGGATGTATTTTATTTAAGTACTCCTGATTATATATCTAGATTATGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGTATTTTATTTAAGTACTCCTGATTATATATCTAGATTATGGA  299

seq1  TTTTTCATAGAATTTTCCATAATTCTATAATGACTATATATGTATGTGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAGAATTTTCCATAATTCTATAATGACTATATATGTATGTGTA  349

seq1  TATATATATATATATATATATATATATATATATATATATATATATTATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATTATGG  399

seq1  AATTATATATTATGATGTATAGCTTATATTTATGAAGCATATAGCTTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATATTATGATGTATAGCTTATATTTATGAAGCATATAGCTTTGC  449

seq1  TTTTTAATTTGTGATAATCCTCATTCTAAAATGTTTAGTAATTTCATATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTGTGATAATCCTCATTCTAAAATGTTTAGTAATTTCATATT  499

seq1  GTATGCTTAGCGAGTAAGGAAATCTGGGTAATGTGGAGTGATCCTGATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTAGCGAGTAAGGAAATCTGGGTAATGTGGAGTGATCCTGATAT  549

seq1  TCTTGTAACAATCTTATCGTTTTAGATAAAATTTGATGCCGGGACTCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAACAATCTTATCGTTTTAGATAAAATTTGATGCCGGGACTCTTC  599

seq1  TTCTTAGTACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGTAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTACACACCGGCTGATTTGGAGAGACCAGAAGAATAATGTAAGA  649

seq1  GACACGTTCAGCATCTGCTCTGGGCTTTGTCTAGTCATCTGTGTATTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTTCAGCATCTGCTCTGGGCTTTGTCTAGTCATCTGTGTATTGGG  699

seq1  AGTTCGAGCGAATGGGCACCTAGCGCCTTGACCCAGCCGAGTGCTTGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGCGAATGGGCACCTAGCGCCTTGACCCAGCCGAGTGCTTGTTT  749

seq1  CATCACCGAATAACAACCTAAGCTACCCCCAGTCAAGAGTTTCCATTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCGAATAACAACCTAAGCTACCCCCAGTCAAGAGTTTCCATTTGT  799

seq1  TTTCTCTCGTTTGTCTTCATTTTGTTTTGAGACACGGTCTTACTCTCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCGTTTGTCTTCATTTTGTTTTGAGACACGGTCTTACTCTCTAG  849

seq1  CCTAGTCTGACCTTGAACTTGCTATATATATATATATATAGACCAGTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTGACCTTGAACTTGCTATATATATATATATATAGACCAGTTGA  899

seq1  TCTGTCTGCCTCTGCCTGCTGGGGGCAGTGATACTGAATTC  940
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGCCTCTGCCTGCTGGGGGCAGTGATACTGAATTC  940

seq1: chr8_23148196_23148655
seq2: B6Ng01-060P10.g_70_529

seq1  GAATTCTCTGGACATCAGATTCAACAGGCAGGAAGATGAAAATGATTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGACATCAGATTCAACAGGCAGGAAGATGAAAATGATTGCC  50

seq1  ACACTCAAAGCATCTCACACAGGGCCAGGGGTACGGCTCTGCTTTGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAAGCATCTCACACAGGGCCAGGGGTACGGCTCTGCTTTGGGGG  100

seq1  GAGCGGGGAAGGAAAAAACGGATCTCATCCAAATTATCCCAGGTATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGGAAGGAAAAAACGGATCTCATCCAAATTATCCCAGGTATCCAG  150

seq1  ACAGACAGGTGTTACTCTCTTAATGGTCCCAATGTGGGAGAACTGATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTGTTACTCTCTTAATGGTCCCAATGTGGGAGAACTGATGTC  200

seq1  TCTATGTTGAGCCACTCAAGCATACAGGAATATACGCCTATGCATTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTGAGCCACTCAAGCATACAGGAATATACGCCTATGCATTAGCA  250

seq1  CATACGGTTTGAGGTTTATCTTTAAGTGTTCTAATGTTTTTAATTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGGTTTGAGGTTTATCTTTAAGTGTTCTAATGTTTTTAATTATATA  300

seq1  TTTTGAAACTTAAAAATTTTAATTTAAAAAATAAATGTTATGTTTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACTTAAAAATTTTAATTTAAAAAATAAATGTTATGTTTGTGTG  350

seq1  TGTATGTGGCTTGTGTGTGTGCGTTTGTGACGTGTGTGTGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGGCTTGTGTGTGTGCGTTTGTGACGTGTGTGTGTGTGTGTGTG  400

seq1  TGTGTGGCTTGTGTGTGTGCGTTTGTGACGTGTGTGTGTGTGTGTGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTTGTGTGTGTGCGTTTGTGACGTGTGTGTGTGTGTGTGTGGT  450

seq1  GTTTTGTGTG  460
      || |||||||
seq2  GTGTTGTGTG  460