BAC Information

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BAC

Clone NameB6Ng01-061H04
Chromosome8 (Build37)
Map Location 110,722,497 - 110,870,945
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1, 4922502B01Rik, Gm1943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061H04.bB6Ng01-061H04.g
ACCDH882122DH882123
length1,1361,149
definitionDH882122|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H04, 5' end.DH882123|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,869,789 - 110,870,945)(110,722,497 - 110,723,658)
sequence
gaattccactgcactaaccactcctttggaaggggaggactattttctgg
aagcgtcaaggtcagccttccaaatggctttgggaaaaggtcattgtcct
ctcaaaatccgtttagcagagcaaagcgccagggctcccgtgcgtgtaga
caccggcgttcgccttttctcatcatctactccttcccatttattgctct
catattagtagattaaaagatcagaagtgccagcttttagcaaacacaat
catcttccatcacgcacggatttccatgagaatgaacataaagttattag
agacgagagatgagtccattacatgtattctgagcttgcagtttgatttc
tgttaggcatgccccgatttcttttaagcactgggaatgcgttcattttc
caggtttataagtggggatcctgtgtatctggagtgtcatttagaggatt
attaatttactaaatggtaccccagtgccctgaaagagttaattctcttt
caagagataagcaatttattttctatttagcagcaggatcaggcccactg
cttgcaaatgactatgagccccttagagaggaagggagagagatgctata
taaatataataaatattataattatgattgtaatataatctcaacccatg
gtattatttttatatatacaccctcctagtctttatctaacaaagacctg
attgacattgtatgtgtcctgtcagttttacatttatttggagaacgttg
aaagccaagtgataagttggactctggctaaaagctacatgtaaacaacc
tgttaatcaacatatactccccaaaccctgtaactagaaaggacagccca
ggacctgcctcccgtgagcttccaggtagatcaagtaagaaggctacatg
cacaaatatctagctaaagcagtaacacgcactattgggagcccacaaga
cgtcatctgacagagagacaaatcagccatggtatgagccactgtctgct
cctggccatcccacactggacatccctgaaagtgacatctaagcttgata
ccatacagccttgcgctgactgtttgatgatttcattatggctgcagtca
ctgactggagattagatgggaagtctacctgcaaaa
gaattctctgagaacatgggaaacagcctgagccaggacacaggggtgaa
aatcaacagagcaaatccacaggaaatacgagttgttcagggaagaataa
aatctatactagaggcaacaactagaaaagtacatgaatgtccagctaga
aggtttggtttctgctcagcgtagtaattgaaatgtttaaaggaaggtga
taggctgagctttgtgttttcagtagaatcaatatggcagaagtacaaag
aacgcttccattcatttgttcatttatgatatatattatatatcatatat
atagagagaagacaatatacgtgtcttctctcacatacacacacacacat
attgtcttctagaaactgaagactgtagtagatctgaagatcagatggtg
atgttctcttccacttgaaacttactgcccagtacataagaaatagacac
taaggcttgactcttatgattaactgctatattggcccaaagtggatttc
aaagaaatgcttaacataataatggggaacatttttaaaagagtgacgcc
aagcttacagtgaaaagaaaaacagcaaggagggtgatgtgggtgccatg
ctctaagactccggccatgtgatggttcctcttcactgtcagcgtgagcg
agattcagaactacttgtaatgtctatgagagtgcttccaaagaggttca
actagggtggaaaaggacaccctaagcatagtgttcccccagtggctgca
ggcccagaggaatagaagtagaaaatctgctgggtaccagcatccctgtt
tctctgcttcctgatgctcccagatgtgggaaggggccctcccactgccc
agatgcaaactgcacccactgcccttccttctctatatagcgggctgtat
atgcatactgtgagtcccaataaatatctcccatcgtgagttgctccttg
aaaggggttggtcatagcaatgaagaagtggctcatacaaccaccagcag
agctgggatcagcagttctgcatgaagtgaggtgcaggttgagatcctcg
acaagatacagaaaaaaaatggggtggggacaggaacaaagcagacaaag
gcaggagctctgtcagaagctacctgtaagaaagggtacagttcaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110869789_110870945
seq2: B6Ng01-061H04.b_46_1181 (reverse)

seq1  TTTTGCAGGTAGAACTTTCCCAAATCTTTACATCTCCAGTCAGTGACTTG  50
      |||||||||||||   |||||  ||||    |||||||||||||||| ||
seq2  TTTTGCAGGTAGA--CTTCCC--ATCT---AATCTCCAGTCAGTGAC-TG  42

seq1  CAGCCACTAAATGAAAATCATCCAGACAGTCAGCGGCAAGGCTGGTATTG  100
      ||||||   |||| ||||||| || ||||||||| |||||||| ||| ||
seq2  CAGCCA--TAATG-AAATCAT-CAAACAGTCAGC-GCAAGGCT-GTA-TG  85

seq1  GTATCAAGCCTAAGATGTCCACTTTCAGGGATGTCCAGTGTGGGATGGCC  150
      |||||||| || |||||| |||||||||||||||||||||||||||||||
seq2  GTATCAAG-CTTAGATGT-CACTTTCAGGGATGTCCAGTGTGGGATGGCC  133

seq1  AGGGGCAGACAGTGGCTTCATACCATGGCTGATTTGTCTCTTCTGTCAGA  200
      ||| |||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AGGAGCAGACAGTGGC-TCATACCATGGCTGATTTGTCTC-TCTGTCAGA  181

seq1  TGACGTCTTGTGGGCTTCCCAATAGTGCGTGTTACTGCCTTTAGCTAGAT  250
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TGACGTCTTGTGGGC-TCCCAATAGTGCGTGTTACTG-CTTTAGCTAGAT  229

seq1  ATTTGTGCATGTAGCCTTCTTACTTGATCTACCTGGAAGCTCACGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGCATGTAGCCTTCTTACTTGATCTACCTGGAAGCTCACGGGAGG  279

seq1  CAGGTCCTGGGCTGTCCTTTCTAGTTACAGGGTTTGGGGAGTATATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTGGGCTGTCCTTTCTAGTTACAGGGTTTGGGGAGTATATGTTG  329

seq1  ATTAACAGGTTGTTTACATGTAGCTTTTAGCCAGAGTCCAACTTATCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGGTTGTTTACATGTAGCTTTTAGCCAGAGTCCAACTTATCACT  379

seq1  TGGCTTTCAACGTTCTCCAAATAAATGTAAAACTGACAGGACACATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCAACGTTCTCCAAATAAATGTAAAACTGACAGGACACATACAA  429

seq1  TGTCAATCAGGTCTTTGTTAGATAAAGACTAGGAGGGTGTATATATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCAGGTCTTTGTTAGATAAAGACTAGGAGGGTGTATATATAAAA  479

seq1  ATAATACCATGGGTTGAGATTATATTACAATCATAATTATAATATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACCATGGGTTGAGATTATATTACAATCATAATTATAATATTTATT  529

seq1  ATATTTATATAGCATCTCTCTCCCTTCCTCTCTAAGGGGCTCATAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATATAGCATCTCTCTCCCTTCCTCTCTAAGGGGCTCATAGTCAT  579

seq1  TTGCAAGCAGTGGGCCTGATCCTGCTGCTAAATAGAAAATAAATTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCAGTGGGCCTGATCCTGCTGCTAAATAGAAAATAAATTGCTTA  629

seq1  TCTCTTGAAAGAGAATTAACTCTTTCAGGGCACTGGGGTACCATTTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAAAGAGAATTAACTCTTTCAGGGCACTGGGGTACCATTTAGTA  679

seq1  AATTAATAATCCTCTAAATGACACTCCAGATACACAGGATCCCCACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAATCCTCTAAATGACACTCCAGATACACAGGATCCCCACTTAT  729

seq1  AAACCTGGAAAATGAACGCATTCCCAGTGCTTAAAAGAAATCGGGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGAAAATGAACGCATTCCCAGTGCTTAAAAGAAATCGGGGCATG  779

seq1  CCTAACAGAAATCAAACTGCAAGCTCAGAATACATGTAATGGACTCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGAAATCAAACTGCAAGCTCAGAATACATGTAATGGACTCATCT  829

seq1  CTCGTCTCTAATAACTTTATGTTCATTCTCATGGAAATCCGTGCGTGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTCTAATAACTTTATGTTCATTCTCATGGAAATCCGTGCGTGATG  879

seq1  GAAGATGATTGTGTTTGCTAAAAGCTGGCACTTCTGATCTTTTAATCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATTGTGTTTGCTAAAAGCTGGCACTTCTGATCTTTTAATCTAC  929

seq1  TAATATGAGAGCAATAAATGGGAAGGAGTAGATGATGAGAAAAGGCGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGAGAGCAATAAATGGGAAGGAGTAGATGATGAGAAAAGGCGAAC  979

seq1  GCCGGTGTCTACACGCACGGGAGCCCTGGCGCTTTGCTCTGCTAAACGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTGTCTACACGCACGGGAGCCCTGGCGCTTTGCTCTGCTAAACGGA  1029

seq1  TTTTGAGAGGACAATGACCTTTTCCCAAAGCCATTTGGAAGGCTGACCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAGGACAATGACCTTTTCCCAAAGCCATTTGGAAGGCTGACCTT  1079

seq1  GACGCTTCCAGAAAATAGTCCTCCCCTTCCAAAGGAGTGGTTAGTGCAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTTCCAGAAAATAGTCCTCCCCTTCCAAAGGAGTGGTTAGTGCAGT  1129

seq1  GGAATTC  1157
      |||||||
seq2  GGAATTC  1136

seq1: chr8_110722497_110723658
seq2: B6Ng01-061H04.g_69_1217

seq1  GAATTCTCTGAGAACATGGGAAACAGCCTGAGCCAGGACACAGGGGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGAACATGGGAAACAGCCTGAGCCAGGACACAGGGGTGAA  50

seq1  AATCAACAGAGCAAATCCACAGGAAATACGAGTTGTTCAGGGAAGAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAGAGCAAATCCACAGGAAATACGAGTTGTTCAGGGAAGAATAA  100

seq1  AATCTATACTAGAGGCAACAACTAGAAAAGTACATGAATGTCCAGCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATACTAGAGGCAACAACTAGAAAAGTACATGAATGTCCAGCTAGA  150

seq1  AGGTTTGGTTTCTGCTCAGCGTAGTAATTGAAATGTTTAAAGGAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGTTTCTGCTCAGCGTAGTAATTGAAATGTTTAAAGGAAGGTGA  200

seq1  TAGGCTGAGCTTTGTGTTTTCAGTAGAATCAATATGGCAGAAGTACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAGCTTTGTGTTTTCAGTAGAATCAATATGGCAGAAGTACAAAG  250

seq1  AACGCTTCCATTCATTTGTTCATTTATGATATATATTATATATCATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTTCCATTCATTTGTTCATTTATGATATATATTATATATCATATAT  300

seq1  ATAGAGAGAAGACAATATACGTGTCTTCTCTCACATACACACACACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGAAGACAATATACGTGTCTTCTCTCACATACACACACACACAT  350

seq1  ATTGTCTTCTAGAAACTGAAGACTGTAGTAGATCTGAAGATCAGATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCTAGAAACTGAAGACTGTAGTAGATCTGAAGATCAGATGGTG  400

seq1  ATGTTCTCTTCCACTTGAAACTTACTGCCCAGTACATAAGAAATAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTTCCACTTGAAACTTACTGCCCAGTACATAAGAAATAGACAC  450

seq1  TAAGGCTTGACTCTTATGATTAACTGCTATATTGGCCCAAAGTGGATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTTGACTCTTATGATTAACTGCTATATTGGCCCAAAGTGGATTTC  500

seq1  AAAGAAATGCTTAACATAATAATGGGGAACATTTTTAAAAGAGTGACGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGCTTAACATAATAATGGGGAACATTTTTAAAAGAGTGACGCC  550

seq1  AAGCTTACAGTGAAAAGAAAAACAGCAAGGAGGGTGATGTGGGTGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACAGTGAAAAGAAAAACAGCAAGGAGGGTGATGTGGGTGCCATG  600

seq1  CTCTAAGACTCCGGCCATGTGATGGTTCCTCTTCACTGTCAGCGTGAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGACTCCGGCCATGTGATGGTTCCTCTTCACTGTCAGCGTGAGCG  650

seq1  AGATTCAGAACTACTTGTAATGTCTATGAGAGTGCTTCCAAAGAGGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGAACTACTTGTAATGTCTATGAGAGTGCTTCCAAAGAGGTTCA  700

seq1  ACTAGGGTGGAAAAGGACACCCTAAGCATAGTGTTCCCCCAGTGGCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTGGAAAAGGACACCCTAAGCATAGTGTTCCCCCAGTGGCTGCA  750

seq1  GGCCCAGAGGAATAGAAGTAGAAAATCTGCTGGGTACCAGCATCCCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAGGAATAGAAGTAGAAAATCTGCTGGGTACCAGCATCCCTGTT  800

seq1  TCTCTGCTTCCTGATGCTCCCAGATGTGGGAAGGGGCCCTCCCACTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCCTGATGCTCCCAGATGTGGGAAGGGGCCCTCCCACTGCCC  850

seq1  AGATGCAAACTGCACCCACTGCCCTTCCTTCTCTAATATAGCGGGCTGTA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATGCAAACTGCACCCACTGCCCTTCCTTCTCT-ATATAGCGGGCTGTA  899

seq1  TATGCATACTGTGAGTCCCAATAAATATCTCCCATCGTGAGTTGCTCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATACTGTGAGTCCCAATAAATATCTCCCATCGTGAGTTGCTCCTT  949

seq1  GACAGGGGTTGGTCATAGCAATGAAGAAAGTGGCCCATACAACCACCAGC  1000
      || ||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  GAAAGGGGTTGGTCATAGCAATGAAG-AAGTGGCTCATACAACCACCAGC  998

seq1  AGAAGCTGGGGATCAGCAGTTCCTGCATGAAGTGAGGTGCCAGTTTGAGA  1050
      || |||| ||||||||||||| ||||||||||||||||| ||| ||||||
seq2  AG-AGCT-GGGATCAGCAGTT-CTGCATGAAGTGAGGTG-CAGGTTGAGA  1044

seq1  TTCTCGACAAGATACAG-AAAAAGATGGGGTGGGGGAGCCAGGAACAAAG  1099
      | ||||||||||||||| ||||| ||||||||||   | |||||||||||
seq2  TCCTCGACAAGATACAGAAAAAAAATGGGGTGGG---GACAGGAACAAAG  1091

seq1  CAGGACAAAAGGCAGGAGCTCTGTCAGGGAAGCGACACTGTAGGAAAAGG  1149
      || ||| |||||||||||||||||||  ||||| || ||||| |||| ||
seq2  CA-GAC-AAAGGCAGGAGCTCTGTCA--GAAGCTAC-CTGTAAGAAAGGG  1136

seq1  TACAGTTCAGGAA  1162
      |||||||||||||
seq2  TACAGTTCAGGAA  1149