BAC Information

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BAC

Clone NameB6Ng01-061J23
Chromosome8 (Build37)9 (Build37)
Map Location 51,862,123 - 51,862,17317,636,864 - 17,637,816
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061J23.bB6Ng01-061J23.g
ACCDH882246DH882247
length156977
definitionDH882246|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J23, 5' end.DH882247|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,862,123 - 51,862,173)(17,636,864 - 17,637,816)
sequence
gaattctgtctctagctgcatatgtagcataggatgggctagtccgtcat
caatgggaggagaggcccttggtcctgtgaaggttctatgccccaatata
ggggaatgcctgggccagaaagcaggagtgggtgggttgggaagctgttt
gagggg
gaattccatactagctggattagtttacattcctaccaacagtatagaat
ggttcacttttgtacatataaacatcagagtttgttggtccctacctcca
atttttccatctcagccactgtttgctgtacttctacccctcctagttcc
ctgcacctccctttttacccagatctactcttccacatccctaaaataag
agtgagaaaaggaaaaaaaattaggcttcccagggatatcaaccaagcac
agcataacaaattactataagactagacacaaaccctcatatcaaagttg
gacaaggtttactcaataggagtaaaaggtccccaaacacagatagaaga
gtcagagatacccccatgcccacagttatgtgtcctacaagaataccaaa
caacacaagccataacttaaatgcaaatgaccttgaagaggtgagggatg
gcaaggtcgagctaaggcctgaaaccccagggactctgaaaggtttgtag
gaactttacatgctcccagcaccaggcccctgtcacatagccacaggccc
ccatagagagaattgtgcccttcagtcatataggggaagagtccccaagc
ccctccacatgtagaagaggcatccctaacatgtcagaccaagccaatag
gaagcacctgctgtcagacccccacccacattaaaaacagtatataagat
cctatccagaaggaataaaggtgtgtaagaattactctgtcatctggtca
tctgagaacatctgtcacaagagctgtaaacctgactaagaagagaacac
actcccgaagcttttaccaccagaagctcttctgcactcagttctctcag
ctctgtgcagctcagagaatctagtgcagtgtctcagaacagcagctgtc
agggcagcagcaccaaacagcagcagctgcagagcctacaaaggcacttc
cctatccttgcatgtgccctttcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51862123_51862173
seq2: B6Ng01-061J23.b_155_198 (reverse)

seq1  CCCCTC--CCAGCTTCCCCTGCTCACCAACCCACCCACTCCTGCTTCCTG  48
      ||||||   |||||||         ||||||||||||||||||||| |||
seq2  CCCCTCAAACAGCTTC---------CCAACCCACCCACTCCTGCTTTCTG  41

seq1  GCC  51
      |||
seq2  GCC  44

seq1: chr9_17636864_17637816
seq2: B6Ng01-061J23.g_67_1018

seq1  GAATTCCATACTAGCTGGATTAGTTTACATTCCTACCAACAGTATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTAGCTGGATTAGTTTACATTCCTACCAACAGTATAGAAT  50

seq1  GGTTCACTTTTGTACATATAAACATCAGAGTTTGTTGGTCCCTACCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACTTTTGTACATATAAACATCAGAGTTTGTTGGTCCCTACCTCCA  100

seq1  ATTTTTCCATCTCAGCCACTGTTTGCTGTACTTCTACCCCTCCTAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCATCTCAGCCACTGTTTGCTGTACTTCTACCCCTCCTAGTTCC  150

seq1  CTGCACCTCCCTTTTTACCCAGATCTACTCTTCCACATCCCTAAAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTCCCTTTTTACCCAGATCTACTCTTCCACATCCCTAAAATAAG  200

seq1  AGTGAGAAAAGGAAAAAAAATTAGGCTTCCCAGGGATATCAACCAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAAAGGAAAAAAAATTAGGCTTCCCAGGGATATCAACCAAGCAC  250

seq1  AGCATAACAAATTACTATAAGACTAGACACAAACCCTCATATCAAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACAAATTACTATAAGACTAGACACAAACCCTCATATCAAAGTTG  300

seq1  GACAAGGTTTACTCAATAGGAGTAAAAGGTCCCCAAACACAGATAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTTACTCAATAGGAGTAAAAGGTCCCCAAACACAGATAGAAGA  350

seq1  GTCAGAGATACCCCCATGCCCACAGTTATGTGTCCTACAAGAATACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGATACCCCCATGCCCACAGTTATGTGTCCTACAAGAATACCAAA  400

seq1  CAACACAAGCCATAACTTAAATGCAAATGACCTTGAAGAGGTGAGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAGCCATAACTTAAATGCAAATGACCTTGAAGAGGTGAGGGATG  450

seq1  GCAAGGTCGAGCTAAGGCCTGAAACCCCAGGGACTCTGAAAGGTTTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCGAGCTAAGGCCTGAAACCCCAGGGACTCTGAAAGGTTTGTAG  500

seq1  GAACTTTACATGCTCCCAGCACCAGGCCCCTGTCACATAGCCACAGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTACATGCTCCCAGCACCAGGCCCCTGTCACATAGCCACAGGCCC  550

seq1  CCATAGAGAGAATTGTGCCCTTCAGTCATATAGGGGAAGAGTCCCCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGAGAATTGTGCCCTTCAGTCATATAGGGGAAGAGTCCCCAAGC  600

seq1  CCCTCCACATGTAGAAGAGGCATCCCTAACATGTCAGACCAAGCCAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACATGTAGAAGAGGCATCCCTAACATGTCAGACCAAGCCAATAG  650

seq1  GAAGCACCTGCTGTCAGACCCCCACCCACATTAAAAACAGTATATAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACCTGCTGTCAGACCCCCACCCACATTAAAAACAGTATATAAGAT  700

seq1  CCTATCCAGAAGGAATAAAGGTGTGTAAGAATTACTCTGTCATCTGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCAGAAGGAATAAAGGTGTGTAAGAATTACTCTGTCATCTGGTCA  750

seq1  TCTGAGAACATCTGTCACAAGAGCTGTAAACCTGACTAAGAAGAGAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAACATCTGTCACAAGAGCTGTAAACCTGACTAAGAAGAGAACAC  800

seq1  ACTCCCGAAGCTTTTACCACCAGAAGCTCTTCTGCACTCAGTTCCCTCAG  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTCCCGAAGCTTTTACCACCAGAAGCTCTTCTGCACTCAGTTCTCTCAG  850

seq1  CTCTGTGCAGCTCAGAGAATCTAGTGCAGTGTCTCAGAACAGCAGCTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCAGCTCAGAGAATCTAGTGCAGTGTCTCAGAACAGCAGCTGTC  900

seq1  AGGGCAGCAGCACCAAAACAGCAGCAGCTGCAGAGCCTACAAAGGCACTT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCAGCACC-AAACAGCAGCAGCTGCAGAGCCTACAAAGGCACTT  949

seq1  CCC  953
      |||
seq2  CCC  952