BAC Information

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BAC

Clone NameB6Ng01-062D01
Chromosome8 (Build37)
Map Location 50,347,397 - 50,499,521
singlet/doubletdoublet
Overlap gene4930555F03Rik
Upstream geneOdz3, 2900073C17Rik, LOC100039866
Downstream geneLOC100039919, EG667495, LOC100039954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062D01.bB6Ng01-062D01.g
ACCDH882662DH882663
length1,0811,100
definitionDH882662|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D01, 5' end.DH882663|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,498,433 - 50,499,521)(50,347,397 - 50,348,499)
sequence
gaattcattacttggtgccgagcaggcaattaacgccgttagttttctca
gaatcccttggtcaaaagtagagtaaagccagttatataacattgaactt
cttaatgggtttacacagagtggaggacatctttttctttttttctttac
tcttttttttttcttcagaaaagcaggttgtaataccatatcactgcctc
tcttgagagaagcagaaataaattcttaagagtgtttatggtgttactcc
gactcaattatccctagattgagtaaaaactgtattttgctttggtcttt
ccttgaaaacctaatacaaactccaagggaggtaaaactgcatcttgaga
aggaaaagatattttttgccattgcaattaataaaggtctcacttgaaat
ggatgctgttctgtttgcagtaggcgcggactcagcagctgaaaactcag
tatgccatgctcacacgataatgtctaacatgggctggtacttaaggctt
cctggaaatatgttttgatcctttttgatcacactaataatacactacga
aggtttgctctgttggatgtagttaaagcttatttgagctttggaaacca
ctggcactttcctggggggaaatatcagaacatttttatttttatctcaa
tcactgcagaaaacttcatggagaatagtctttgtcagtgatatagggca
attgttgtcccaaatagtatttgaaaagagatggcctaaatcgtcaatat
gctgtgctggaaaatggtgactaaaacgattccatgatacatctaaactt
tctttgaagcagagttgctaatttttccccttccttcatttttcctcaca
aataaaacagttaatagatatttctacccataccccctttccagtaaata
ttatgacaggatagagctttttaaaatattcatatgctttttgagattta
aatacttattgtataaatatatcatacttttaaatttttttcaggatttt
ctttggggagtaaagagttatttcatcctcatacgttcaggaatttttat
gtaagtatttagccatatctcccatggtaaa
gaattcctctgccctttcccctctgtaaaaaaaaaacaaaatgacgatct
ttatcaggcatgcagttgtactggctaaatcagttcagatgggtccaatc
tttaggatgcagttattacttaataagctcagacatgctttttcattcca
gttagcaatgaattacacttataatcatgtagtgttagtttcattagatg
ctaaatgctgtaaaatcatgttgaaagattaaatatgataaaggttaaca
atcacagaagttactataatgtaaaggtgaacacatgatgatatctaaga
tccacagaaatagaacattatacttgcatatctaatgggaattttataac
tcattttagcagcatgcgatcttatacattaagttacatattattgttgg
ttaaaattttaaatggaaactctctgtgaaatctcttgggctcaatcagc
tgttgacaaaatcaattttatgtaataaactcaattatgttcacaaataa
atctgcatatatctgatcaagttacactttatctattgacaaaatatgtc
tataacaagcaccaggggtttgttgaatgagcatactatctgaagggtaa
acttctaagagttgatgtcaaaactttgtcttttgtactttgttttaaga
aaataacatgtttagcgttatgaccctcaaagtcctcttcagtttttaca
ttctgtcagtggtgaagttagctgtttgatctgtggaccttagtaaccac
aggtcagctatgtgcatgcaaatcgagctcaacttttactggcaacaatg
ggagaaatggaatgaatgacagacagcaaggaagaggagactgaaggcag
gactcaattctggcctctgctttcttctagagatgcttgcttccattcac
catggtaacttaacactgggttcctaattccctagcatgggggaggaaat
tgctatgctatgatttgctttgcactgtttcttgaaacatttgcatggtg
tagtttagctatgctgaatacagctttggtgctttgtagccagggcttct
attttgctcagaacagtaagaactagctaccgccttgggaatgatcctac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50498433_50499521
seq2: B6Ng01-062D01.b_47_1127 (reverse)

seq1  TTTACCAT-GGAGATATGGCTAAAATACTTTACATTAAAAATCCCTGAAC  49
      |||||||| |||||||||||| |||||| ||||| ||||||| |||||||
seq2  TTTACCATGGGAGATATGGCT-AAATAC-TTACA-TAAAAATTCCTGAAC  47

seq1  GTATGA-GATGAAATAAACTCTTTACTCCCCAAAGAAAAATCCCTGAAAA  98
      |||||| |||||||| |||||||||||||||||||||||   ||||||||
seq2  GTATGAGGATGAAAT-AACTCTTTACTCCCCAAAGAAAA--TCCTGAAAA  94

seq1  AAATTTAAAAGTATGAATATAATTTATACAATAAGTATTTAAATCTCAAA  148
      ||||||||||||||| |||| |||||||||||||||||||||||||| ||
seq2  AAATTTAAAAGTATG-ATAT-ATTTATACAATAAGTATTTAAATCTC-AA  141

seq1  AAAGCATATTGAATATTTTAAAAAGCTCTATCCTGTCATAATATTTACTG  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATA-TGAATATTTTAAAAAGCTCTATCCTGTCATAATATTTACTG  190

seq1  GAAAGGGGGTATGGGTAGAAATATCTATTAACTGTTTTATTTGTGAGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGTATGGGTAGAAATATCTATTAACTGTTTTATTTGTGAGGAA  240

seq1  AAATGAAGGAAGGGGAAAAATTAGCAACTCTGCTTCAAAGAAAGTTTAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGAAGGGGAAAAATTAGCAACTCTGCTTCAAAGAAAGTTTAGA  290

seq1  TGTATCATGGAATCGTTTTAGTCACCATTTTCCAGCACAGCATATTGACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATGGAATCGTTTTAGTCACCATTTTCCAGCACAGCATATTGACG  340

seq1  ATTTAGGCCATCTCTTTTCAAATACTATTTGGGACAACAATTGCCCTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCCATCTCTTTTCAAATACTATTTGGGACAACAATTGCCCTATA  390

seq1  TCACTGACAAAGACTATTCTCCATGAAGTTTTCTGCAGTGATTGAGATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACAAAGACTATTCTCCATGAAGTTTTCTGCAGTGATTGAGATAA  440

seq1  AAATAAAAATGTTCTGATATTTCCCCCCAGGAAAGTGCCAGTGGTTTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATGTTCTGATATTTCCCCCCAGGAAAGTGCCAGTGGTTTCCA  490

seq1  AAGCTCAAATAAGCTTTAACTACATCCAACAGAGCAAACCTTCGTAGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAATAAGCTTTAACTACATCCAACAGAGCAAACCTTCGTAGTGT  540

seq1  ATTATTAGTGTGATCAAAAAGGATCAAAACATATTTCCAGGAAGCCTTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGTGTGATCAAAAAGGATCAAAACATATTTCCAGGAAGCCTTAA  590

seq1  GTACCAGCCCATGTTAGACATTATCGTGTGAGCATGGCATACTGAGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGCCCATGTTAGACATTATCGTGTGAGCATGGCATACTGAGTTTT  640

seq1  CAGCTGCTGAGTCCGCGCCTACTGCAAACAGAACAGCATCCATTTCAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGAGTCCGCGCCTACTGCAAACAGAACAGCATCCATTTCAAGT  690

seq1  GAGACCTTTATTAATTGCAATGGCAAAAAATATCTTTTCCTTCTCAAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTTATTAATTGCAATGGCAAAAAATATCTTTTCCTTCTCAAGAT  740

seq1  GCAGTTTTACCTCCCTTGGAGTTTGTATTAGGTTTTCAAGGAAAGACCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTACCTCCCTTGGAGTTTGTATTAGGTTTTCAAGGAAAGACCAA  790

seq1  AGCAAAATACAGTTTTTACTCAATCTAGGGATAATTGAGTCGGAGTAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATACAGTTTTTACTCAATCTAGGGATAATTGAGTCGGAGTAACA  840

seq1  CCATAAACACTCTTAAGAATTTATTTCTGCTTCTCTCAAGAGAGGCAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACACTCTTAAGAATTTATTTCTGCTTCTCTCAAGAGAGGCAGTG  890

seq1  ATATGGTATTACAACCTGCTTTTCTGAAGAAAAAAAAAAGAGTAAAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTATTACAACCTGCTTTTCTGAAGAAAAAAAAAAGAGTAAAGAAA  940

seq1  AAAAGAAAAAGATGTCCTCCACTCTGTGTAAACCCATTAAGAAGTTCAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGATGTCCTCCACTCTGTGTAAACCCATTAAGAAGTTCAAT  990

seq1  GTTATATAACTGGCTTTACTCTACTTTTGACCAAGGGATTCTGAGAAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAACTGGCTTTACTCTACTTTTGACCAAGGGATTCTGAGAAAAC  1040

seq1  TAACGGCGTTAATTGCCTGCTCGGCACCAAGTAATGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGCGTTAATTGCCTGCTCGGCACCAAGTAATGAATTC  1081

seq1: chr8_50347397_50348499
seq2: B6Ng01-062D01.g_70_1169

seq1  GAATTCCTCTGCCCTTTCCCCTCTGTAAAAAAAAAACAAAATGACGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGCCCTTTCCCCTCTGTAAAAAAAAAACAAAATGACGATCT  50

seq1  TTATCAGGCATGCAGTTGTACTGGCTAAATCAGTTCAGATGGGTCCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGCATGCAGTTGTACTGGCTAAATCAGTTCAGATGGGTCCAATC  100

seq1  TTTAGGATGCAGTTATTACTTAATAAGCTCAGACATGCTTTTTCATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATGCAGTTATTACTTAATAAGCTCAGACATGCTTTTTCATTCCA  150

seq1  GTTAGCAATGAATTACACTTATAATCATGTAGTGTTAGTTTCATTAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAATGAATTACACTTATAATCATGTAGTGTTAGTTTCATTAGATG  200

seq1  CTAAATGCTGTAAAATCATGTTGAAAGATTAAATATGATAAAGGTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCTGTAAAATCATGTTGAAAGATTAAATATGATAAAGGTTAACA  250

seq1  ATCACAGAAGTTACTATAATGTAAAGGTGAACACATGATGATATCTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAAGTTACTATAATGTAAAGGTGAACACATGATGATATCTAAGA  300

seq1  TCCACAGAAATAGAACATTATACTTGCATATCTAATGGGAATTTTATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAAATAGAACATTATACTTGCATATCTAATGGGAATTTTATAAC  350

seq1  TCATTTTAGCAGCATGCGATCTTATACATTAAGTTACATATTATTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGCAGCATGCGATCTTATACATTAAGTTACATATTATTGTTGG  400

seq1  TTAAAATTTTAAATGGAAACTCTCTGTGAAATCTCTTGGGCTCAATCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTAAATGGAAACTCTCTGTGAAATCTCTTGGGCTCAATCAGC  450

seq1  TGTTGACAAAATCAATTTTATGTAATAAACTCAATTATGTTCACAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAAAATCAATTTTATGTAATAAACTCAATTATGTTCACAAATAA  500

seq1  ATCTGCATATATCTGATCAAGTTACACTTTATCTATTGACAAAATATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATATATCTGATCAAGTTACACTTTATCTATTGACAAAATATGTC  550

seq1  TATAACAAGCACCAGGGGTTTGTTGAATGAGCATACTATCTGAAGGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGCACCAGGGGTTTGTTGAATGAGCATACTATCTGAAGGGTAA  600

seq1  ACTTCTAAGAGTTGATGTCAAAACTTTGTCTTTTGTACTTTGTTTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAGAGTTGATGTCAAAACTTTGTCTTTTGTACTTTGTTTTAAGA  650

seq1  AAATAACATGTTTAGCGTTATGACCCTCAAAGTCCTCTTCAGTTTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATGTTTAGCGTTATGACCCTCAAAGTCCTCTTCAGTTTTTACA  700

seq1  TTCTGTCAGTGGTGAAGTTAGCTGTTTGATCTGTGGACCTTAGTAACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGTGGTGAAGTTAGCTGTTTGATCTGTGGACCTTAGTAACCAC  750

seq1  AGGTCAGCTATGTGCATGCAAATCGAGCTCAACTTTTACTGGCAACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCTATGTGCATGCAAATCGAGCTCAACTTTTACTGGCAACAATG  800

seq1  GGAGAAATGGAATGAATGACAGACAGCAAGGAAGAGGAGACTGAAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGGAATGAATGACAGACAGCAAGGAAGAGGAGACTGAAGGCAG  850

seq1  GACTCAATTCTGGCCCCTGCTTTCTTCTAGAGATGCTTGCTTCCATTCAC  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACTCAATTCTGGCCTCTGCTTTCTTCTAGAGATGCTTGCTTCCATTCAC  900

seq1  CATGGTAACTTAACACTGGGTTCCTAATTCCCTAGCATGGGGAGGAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||  | ||||
seq2  CATGGTAACTTAACACTGGGTTCCTAATTCCCTAGCATGGGGGAGGAAAT  950

seq1  TGCTATGCTATTGATTTGCTTTGCACTGTTTCTTGAAACATTTGCATGGT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TGCTATGCTA-TGATTTGCTTTGCACTGTTTCTTGAAACATTTGCATGG-  998

seq1  TGTAGTTTTAGCTATGCTGAATACAGCTTT-GTGCTTTGTAGCCAGGGCT  1049
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTAG-TTTAGCTATGCTGAATACAGCTTTGGTGCTTTGTAGCCAGGGCT  1047

seq1  TCTAATCTGCTCAG-ACAGTAAAGAACCTAGCTA-CGGCTTGGGAATAGA  1097
      |||| | ||||||| ||||| ||||| ||||||| || ||||||||| ||
seq2  TCTATTTTGCTCAGAACAGT-AAGAA-CTAGCTACCGCCTTGGGAAT-GA  1094

seq1  TCCTAC  1103
      ||||||
seq2  TCCTAC  1100