BAC Information

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BAC

Clone NameB6Ng01-062J07
Chromosome8 (Build37)
Map Location 108,823,189 - 108,948,370
singlet/doubletdoublet
Overlap geneSmpd3, Zfp90
Upstream geneE2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
Downstream gene6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062J07.bB6Ng01-062J07.g
ACCDH882931DH882932
length1,1911,164
definitionDH882931|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J07, 5' end.DH882932|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,823,189 - 108,824,406)(108,947,184 - 108,948,370)
sequence
gaattcttagcatgatatttgtggcccccaaaccccttttctctgtcaga
aatgaaagttaccatgccgtgggccctggagagaagccagctgaactaca
ggacaggtcgcaggtgctggcctctcactgctgtgtgtgagacatctaga
acagcctggcgtggagtagacactgcacacaatggctgcaagttgcagac
cagcactgacctgagaaatggcagtttcctgccctagcctcttctctctg
cctgtcttcattcatgtgacaatgctgaagaaagggttcgggagccatca
aaccctctctttaccaccgtctcactaccaggtatggagggtgctgggga
tatatgtttttcactcagaggggcctggcccctggagtgacaccttacac
aggtggaacacgtttttcatgccagttagtgtcaaatagagagctcccta
agcctcagccttgtcactgtaggaagccgtttaatactggactcctctcc
ctgcccccttttttattttgtatgtatatgggtgtttgcctgcatgtgta
tctgtgcactatgtgtgtgtgtgtgcagtgcctacagaagccagaagagg
gcatcagatcccctaggactgaagctattgaaagttgtgagttgccgtgt
gggtgttaggaattgaacatgggttctctaggtgagcagccagtgttctt
aactgctgacatttctccagccctaccttaaaaaaaaaaaaaaagatttc
attttatattattagtagaaaataaaagggtttgtctcatgacagtttta
cacgtgcatgcagtgtacttcaatcgtgctcacaccctttccacactttc
ttgttctctgatctcttagtattggcagcttttgtcatgggcttgaaccc
tcgatggtctgacactagagcctacaatttttcagttagtttgtttgttt
gttttgttttgtttgttttgttttcttccagacaggtttctctgtgtatc
cctggctgtcctggacttgctctataaaccagctggcctcaactcgatat
ggactgcttctacccaagtgctgggattaaggggtggcgccccaccacca
ggcaagcaagttcttatgatcttccatggggccgttggatgatcattcct
attctaacctgaacaatgagcttaactggataaaagaggct
gaattctctggtgctccgtgagctgtgttctccagaggaaggttttccca
cagtccgcacactcatggtgtttccttccagactgagctccttggtctgt
accattggagtaaggatcgcctttatgaatcttctcgtgtttattaagtg
atgatctatgaataaatgatttcctacatttatcacacttataaggcttc
tttttagcaaggatattactctgagtaactagttctgaattgtgttccaa
attatttccaaatgttttacagtcactgggccttatacttgaagaaatgt
ccagttgtggaaccaagtctgtgctcaaactagagtcttcaccaactttg
ttttgctcaatttttttctctagagtggttattttcttctgggaagatgc
ctctggccccagatgtcttctcccactttcctgatgcccctggatagcga
cattccagatatcacctattgtggtgtgtgataaaacatttgttctgagg
aatacttcagatacgccctgctgaggactccgtgaggactcaggcctggt
cttccagtctaaaagaaatataaagtgcaaaagttcccacatttcttgca
gctcaaacaaaatgctagagtagggataagaaaatgagatagaaatcatg
catggctgtatttttaaatcagtcccttagagaaagatgcctgcagaaaa
gaaagagtgaagtaccagcgaatattacaaatccagagtgcctgtcacat
ccagagagtgaggaaagcccatgtaagtgggcgagtgtgataggaaacag
aagcacagaggagcctaagtgtgcgagtactgattttacataacaaaaac
ctgcctggctaatacatccattttataatttcttttacagtaacctatta
gatagcaggcttctaaatactgcagaaaaaaaaatctccagctaaagacc
ttctgaaagattctctgaaatatgggggaggtcacacaccatgctaaaac
tgagaaaagtatgattcgaagcaagttatttttggtctaaactaggagaa
gttcaggttggttgagctctggattcaagcggacatctctcttcatatct
gtattttaataacattatgctagcaggcttagctaaattctgggacggaa
gcgtggaggtcggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108823189_108824406
seq2: B6Ng01-062J07.b_45_1235

seq1  GAATTCTTAGCATGATATTTGTGGCCCCCAAACCCCTTTTCTCTGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCATGATATTTGTGGCCCCCAAACCCCTTTTCTCTGTCAGA  50

seq1  AATGAAAGTTACCATGCCGTGGGCCCTGGAGAGAAGCCAGCTGAACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGTTACCATGCCGTGGGCCCTGGAGAGAAGCCAGCTGAACTACA  100

seq1  GGACAGGTCGCAGGTGCTGGCCTCTCACTGCTGTGTGTGAGACATCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTCGCAGGTGCTGGCCTCTCACTGCTGTGTGTGAGACATCTAGA  150

seq1  ACAGCCTGGCGTGGAGTAGACACTGCACACAATGGCTGCAAGTTGCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGCGTGGAGTAGACACTGCACACAATGGCTGCAAGTTGCAGAC  200

seq1  CAGCACTGACCTGAGAAATGGCAGTTTCCTGCCCTAGCCTCTTCTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGACCTGAGAAATGGCAGTTTCCTGCCCTAGCCTCTTCTCTCTG  250

seq1  CCTGTCTTCATTCATGTGACAATGCTGAAGAAAGGGTTCGGGAGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCATTCATGTGACAATGCTGAAGAAAGGGTTCGGGAGCCATCA  300

seq1  AACCCTCTCTTTACCACCGTCTCACTACCAGGTATGGAGGGTGCTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTCTTTACCACCGTCTCACTACCAGGTATGGAGGGTGCTGGGGA  350

seq1  TATATGTTTTTCACTCAGAGGGGCCTGGCCCCTGGAGTGACACCTTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTTTCACTCAGAGGGGCCTGGCCCCTGGAGTGACACCTTACAC  400

seq1  AGGTGGAACACGTTTTTCATGCCAGTTAGTGTCAAATAGAGAGCTCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACACGTTTTTCATGCCAGTTAGTGTCAAATAGAGAGCTCCCTA  450

seq1  AGCCTCAGCCTTGTCACTGTAGGAAGCCGTTTAATACTGGACTCCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGCCTTGTCACTGTAGGAAGCCGTTTAATACTGGACTCCTCTCC  500

seq1  CTGCCCCCTTTTTTATTTTGTATGTATATGGGTGTTTGCCTGCATGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCTTTTTTATTTTGTATGTATATGGGTGTTTGCCTGCATGTGTA  550

seq1  TCTGTGCACTATGTGTGTGTGTGTGCAGTGCCTACAGAAGCCAGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCACTATGTGTGTGTGTGTGCAGTGCCTACAGAAGCCAGAAGAGG  600

seq1  GCATCAGATCCCCTAGGACTGAAGCTATTGAAAGTTGTGAGTTGCCGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGATCCCCTAGGACTGAAGCTATTGAAAGTTGTGAGTTGCCGTGT  650

seq1  GGGTGTTAGGAATTGAACATGGGTTCTCTAGGTGAGCAGCCAGTGTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTAGGAATTGAACATGGGTTCTCTAGGTGAGCAGCCAGTGTTCTT  700

seq1  AACTGCTGACATTTCTCCAGCCCTACCTTAAAAAAAAAAAAAAAGATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGACATTTCTCCAGCCCTACCTTAAAAAAAAAAAAAAAGATTTC  750

seq1  ATTTTATATTATTAGTAGAAAAT-AAAGGGTTTGTCTCATGACAGTTTTA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTTATATTATTAGTAGAAAATAAAAGGGTTTGTCTCATGACAGTTTTA  800

seq1  CACGTGCATGCAGTGTACTTCAATCGTGCTCACACCCTTTCCACACTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCATGCAGTGTACTTCAATCGTGCTCACACCCTTTCCACACTTTC  850

seq1  TTGTTCTCTGATCTCTTAGTATTGGCAGCTTTTGTCATGGGCTTGAACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTGATCTCTTAGTATTGGCAGCTTTTGTCATGGGCTTGAACCC  900

seq1  TCGATGGTCTGACACTAAGAGCCTACAATTTTTCAGTTAGTTTGTTTTGT  949
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TCGATGGTCTGACACT-AGAGCCTACAATTTTTCAGTTAGTTTG-TTTGT  948

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTCTTCCAGACAGGGTTTCTCTGTG  999
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TTGTTTTGTTTTG-TTTGTTTTGTTTTCTTCCAGACA-GGTTTCTCTGTG  996

seq1  TATCCCTGGCTGTCCTGGAACTTGCTCTATAGACCAGGCTGGCCTCAAAC  1049
      |||||||||||||||||| |||||||||||| |||| ||||||||| |||
seq2  TATCCCTGGCTGTCCTGG-ACTTGCTCTATAAACCA-GCTGGCCTC-AAC  1043

seq1  TCAGATATGGGCCTGCCTCTAACCCCCAAGTGCTGGGATTAAAGGCGTGC  1099
      || ||||| || |||| ||||   |||||||||||||||| |||| ||| 
seq2  TC-GATAT-GGACTGCTTCTA---CCCAAGTGCTGGGATT-AAGGGGTGG  1087

seq1  GCCCCCACCACCAGGCAGAGCCCATGCTCTTAATGATCTTCCCATGGGGC  1149
        ||||||||||||||| ||  || | |||| |||||||| |||||||||
seq2  CGCCCCACCACCAGGCA-AG--CAAGTTCTT-ATGATCTT-CCATGGGGC  1132

seq1  CTGTTGGATGATTCATTTCTTATTCTATACCCAGAGACAATGAGGCATAA  1199
      | ||||||||| ||| ||| |||||  || || || ||||||||   | |
seq2  C-GTTGGATGA-TCA-TTCCTATTC--TAACCTGA-ACAATGAG--CTTA  1174

seq1  ACTAGAATAAAAAGAGGCT  1218
      ||| ||   ||||||||||
seq2  ACTGGA--TAAAAGAGGCT  1191

seq1: chr8_108947184_108948370
seq2: B6Ng01-062J07.g_68_1231 (reverse)

seq1  GCCGACCTCAAACTCTGCTCTCGTCCCAGATGTTGAGCTTAAAGGCTTGC  50
      ||||||||| |     |||  |||||||||  || ||||   | || |||
seq2  GCCGACCTCCA----CGCTTCCGTCCCAGA-ATTTAGCT---AAGCCTGC  42

seq1  TAGGCAATAAATGTTATTTTAAAATTACAGATGATAGAAGAGAGATGGTC  100
      || |||   |||||||||   ||| ||||||| || |||||||||||  |
seq2  TA-GCA--TAATGTTATT---AAAATACAGAT-AT-GAAGAGAGATGTCC  84

seq1  GCTATAGAAT-CAGAGCTCACACAAACTGAAACTTCTCCTAGTTTTAAGA  149
      ||  | |||| |||||||||  ||| ||| |||||||||||||||  |||
seq2  GC--TTGAATCCAGAGCTCAACCAACCTG-AACTTCTCCTAGTTT--AGA  129

seq1  CCAAAAATAACTTGCTTTCCGAATCATTACTTTTTCTCAGTTTTTAGCAT  199
      |||||||||||||||||  ||||||| ||| ||||||||| |||||||||
seq2  CCAAAAATAACTTGCTT--CGAATCA-TAC-TTTTCTCAG-TTTTAGCAT  174

seq1  GGTGTGTGGCCT-CCCCATATGTCAGAGAATCTTTTCAGAAGGTCCTTAG  248
      |||||||| ||| |||||||| |||||||||| |||||||||||| ||||
seq2  GGTGTGTGACCTCCCCCATATTTCAGAGAATC-TTTCAGAAGGTCTTTAG  223

seq1  CTGGAGA-TTTTTTTTCTGCAGTATTTAGAAGCCTGCTATCTAATAGGTT  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATTTTTTTTTCTGCAGTATTTAGAAGCCTGCTATCTAATAGGTT  273

seq1  ACTGT-AAAGGAATTATAAAATGGATGTATTAGCCAGGCAGGTTTTTGTT  346
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAGAAATTATAAAATGGATGTATTAGCCAGGCAGGTTTTTGTT  323

seq1  ATGTAAAATCAGTACTCGCACACTTAGGCTCCTCTGTGCTTCTGTTTCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATCAGTACTCGCACACTTAGGCTCCTCTGTGCTTCTGTTTCCT  373

seq1  ATCACACTCGCCCACTTACATGGGCTTTCCTCACTCTCTGGATGTGACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTCGCCCACTTACATGGGCTTTCCTCACTCTCTGGATGTGACAG  423

seq1  GCACTCTGGATTTGTAATATTCGCTGGTACTTCACTCTTTCTTTTCTGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGGATTTGTAATATTCGCTGGTACTTCACTCTTTCTTTTCTGCA  473

seq1  GGCATCTTTCTCTAAGGGACTGATTTAAAAATACAGCCATGCATGATTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTTCTCTAAGGGACTGATTTAAAAATACAGCCATGCATGATTTC  523

seq1  TATCTCATTTTCTTATCCCTACTCTAGCATTTTGTTTGAGCTGCAAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATTTTCTTATCCCTACTCTAGCATTTTGTTTGAGCTGCAAGAAA  573

seq1  TGTGGGAACTTTTGCACTTTATATTTCTTTTAGACTGGAAGACCAGGCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAACTTTTGCACTTTATATTTCTTTTAGACTGGAAGACCAGGCCT  623

seq1  GAGTCCTCACGGAGTCCTCAGCAGGGCGTATCTGAAGTATTCCTCAGAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCACGGAGTCCTCAGCAGGGCGTATCTGAAGTATTCCTCAGAAC  673

seq1  AAATGTTTTATCACACACCACAATAGGTGATATCTGGAATGTCGCTATCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTATCACACACCACAATAGGTGATATCTGGAATGTCGCTATCC  723

seq1  AGGGGCATCAGGAAAGTGGGAGAAGACATCTGGGGCCAGAGGCATCTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATCAGGAAAGTGGGAGAAGACATCTGGGGCCAGAGGCATCTTCC  773

seq1  CAGAAGAAAATAACCACTCTAGAGAAAAAAATTGAGCAAAACAAAGTTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAAATAACCACTCTAGAGAAAAAAATTGAGCAAAACAAAGTTGG  823

seq1  TGAAGACTCTAGTTTGAGCACAGACTTGGTTCCACAACTGGACATTTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCTAGTTTGAGCACAGACTTGGTTCCACAACTGGACATTTCTT  873

seq1  CAAGTATAAGGCCCAGTGACTGTAAAACATTTGGAAATAATTTGGAACAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAAGGCCCAGTGACTGTAAAACATTTGGAAATAATTTGGAACAC  923

seq1  AATTCAGAACTAGTTACTCAGAGTAATATCCTTGCTAAAAAGAAGCCTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAACTAGTTACTCAGAGTAATATCCTTGCTAAAAAGAAGCCTTA  973

seq1  TAAGTGTGATAAATGTAGGAAATCATTTATTCATAGATCATCACTTAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGATAAATGTAGGAAATCATTTATTCATAGATCATCACTTAATA  1023

seq1  AACACGAGAAGATTCATAAAGGCGATCCTTACTCCAATGGTACAGACCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGAGAAGATTCATAAAGGCGATCCTTACTCCAATGGTACAGACCAA  1073

seq1  GGAGCTCAGTCTGGAAGGAAACACCATGAGTGTGCGGACTGTGGGAAAAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAGTCTGGAAGGAAACACCATGAGTGTGCGGACTGTGGGAAAAC  1123

seq1  CTTCCTCTGGAGAACACAGCTCACGGAGCACCAGAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGAGAACACAGCTCACGGAGCACCAGAGAATTC  1164