BAC Information

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BAC

Clone NameB6Ng01-062J21
Chromosome6 (Build37)8 (Build37)
Map Location 18,835,443 - 18,835,96818,075,645 - 18,076,579
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062J21.bB6Ng01-062J21.g
ACCDH882959DH882960
length925934
definitionDH882959|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J21, 5' end.DH882960|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,443 - 18,835,968)(18,075,645 - 18,076,579)
sequence
gaattctttgttcagctctgagccccatttttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgttttgggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttt
atgaggtcccatttatcgattcttgatcttacagcacaagccattgctgt
tctattcaggaatttttaccctgtacccatatcttcgaggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtgaagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattca
cattcttctacatgataaccgccagttgtaccagcaccaattgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatctctgggtctttaattctcttccattg
gtttacttgtctgtcactataccagtaccatgcagttttgatcacaattg
ctctgtagtacagttttaggtccggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctcggttttttgttattccagat
gaatctgccgattgccctttctaatttgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatggccatt
tttacaatgttgatcctgccaatccatgagcatgggggatctttccatct
tctgagatcttctttaatttctttctttagagacttgaagttcttatcat
acagatctttcacttccttagagtc
gaattcttcttctctactattcatccacaaagtctctggtaaagcaccat
gctcatattccatggagtgattgcttgaatatcatctaggactcattctg
tggatccgagcccaggaacatggactttcgggggggggggggcggtgctc
atatattttataaacctaatctcagtatccccattcatgcagcttgtgag
gttcagaacacttgtgaggagacggtctgatctgtttgcaatattaacaa
aggaataagaagggaagtagcagtgcctcctatgtctaaacttagagaaa
actatctcaagagaaagggatgatggtggtcagagcaacctaagggatgc
acttacatccaatttcagtcagcgttgggctgtgagatggtggaaataca
cttcaccactgtggggtttctcacaggagagaaataagaatgtaaaaagt
gagactgtaaacctaatgcagaaggggtctgtgagggtgaaggacatgct
tggagaagtactgattcatagccacccctttaagagatatcatttctagg
agctgtataaatggttcattggttaaaacagcttattgttcacagagaag
atctggctttatttctcaacatgagcatggtagctcagattcatcttcta
gtccaggtctaggagattttgatgctcctttaaactctatgggattctaa
aatatacattgtgtatgtttacacattcatgcatgagtattcataagtaa
cataaaattaataaatatttttcaaaatgattatttctgagtctgaatac
acactggcccttgagattttctttttttatctttaatttttgtattagat
attttctttatatacattcaatgctatccataaacttccttataccctcc
ccctgcccagcttccctaccaaccactcctgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835443_18835968
seq2: B6Ng01-062J21.b_46_573 (reverse)

seq1  CAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  50

seq1  AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCA  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGTA  100

seq1  CAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTC  150
      |||||||  |||||| ||||||||||||||||| |||||||   ||||||
seq2  CAACTGGCGGTTATCATGTAGAAGAATGTGAATTGATCCATTTCTATCTC  150

seq1  CATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCA  200
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTTCACATAAAACCA  200

seq1  GAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATAT  250
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATAT  250

seq1  GGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGA  299
      ||| | |||| |||| |||||||| |||||||||||||| |||||||| |
seq2  GGGTACAGGGTAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAA  300

seq1  GGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAG  349
      | |  |||||||| ||||||||||| || ||| | ||||| |||||||| 
seq2  GATCAAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAA  350

seq1  GCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAG  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAG  400

seq1  GATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATA  449
      ||||||||||||||| ||| |||||||||||||||||||||| |||||||
seq2  GATCTTTACCTATCCCAAAACAGATAGGGGACTAATATCCAATATATATA  450

seq1  AAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATT-AATAA  498
      ||||||||||||||||||||| |||||||||||||||||||||| || ||
seq2  AAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  526
      |||||||||||| |||||||||||||||
seq2  ATGGGGCTCAGAGCTGAACAAAGAATTC  528

seq1: chr8_18075645_18076579
seq2: B6Ng01-062J21.g_65_998

seq1  GAATTCTTCTTCTCTACTATTCATCCACAAAGTCTCTGGTAAAGCACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTCTCTACTATTCATCCACAAAGTCTCTGGTAAAGCACCAT  50

seq1  GCTCATATTCCATGGAGTGATTGCTTGAATATCATCTAGGACTCATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATATTCCATGGAGTGATTGCTTGAATATCATCTAGGACTCATTCTG  100

seq1  TGGATCCGAGCCCAGGAACATGGACTTTCGGGGGGGGGGGGGCGGTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCGAGCCCAGGAACATGGACTTTCGGGGGGGGGGGGGCGGTGCTC  150

seq1  ATATATTTTATAAACCTAATCTCAGTATCCCCATTCATGCAGCTTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTATAAACCTAATCTCAGTATCCCCATTCATGCAGCTTGTGAG  200

seq1  GTTCAGAACACTTGTGAGGAGACGGTCTGATCTGTTTGCAATATTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAACACTTGTGAGGAGACGGTCTGATCTGTTTGCAATATTAACAA  250

seq1  AGGAATAAGAAGGGAAGTAGCAGTGCCTCCTATGTCTAAACTTAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGAAGGGAAGTAGCAGTGCCTCCTATGTCTAAACTTAGAGAAA  300

seq1  ACTATCTCAAGAGAAAGGGATGATGGTGGTCAGAGCAACCTAAGGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCAAGAGAAAGGGATGATGGTGGTCAGAGCAACCTAAGGGATGC  350

seq1  ACTTACATCCAATTTCAGTCAGCGTTGGGCTGTGAGATGGTGGAAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATCCAATTTCAGTCAGCGTTGGGCTGTGAGATGGTGGAAATACA  400

seq1  CTTCACCACTGTGGGGTTTCTCACAGGAGAGAAATAAGAATGTAAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCACTGTGGGGTTTCTCACAGGAGAGAAATAAGAATGTAAAAAGT  450

seq1  GAGACTGTAAACCTAATGCAGAAGGGGTCTGTGAGGGTGAAGGACATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTAAACCTAATGCAGAAGGGGTCTGTGAGGGTGAAGGACATGCT  500

seq1  TGGAGAAGTACTGATTCATAGCCACCCCTTTAAGAGATATCATTTCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGTACTGATTCATAGCCACCCCTTTAAGAGATATCATTTCTAGG  550

seq1  AGCTGTATAAATGGTTCATTGGTTAAAACAGCTTATTGTTCACAGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATAAATGGTTCATTGGTTAAAACAGCTTATTGTTCACAGAGAAG  600

seq1  ATCTGGCTTTATTTCTCAACATGAGCATGGTAGCTCAGATTCATCTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTTATTTCTCAACATGAGCATGGTAGCTCAGATTCATCTTCTA  650

seq1  GTCCAGGTCTAGGAGA-TTTGATGCTCCTTTAAACTCTATGGGATTCT-A  698
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  GTCCAGGTCTAGGAGATTTTGATGCTCCTTTAAACTCTATGGGATTCTAA  700

seq1  AATATACATTGTGTATGTTTACACATTCATGCATGAGTATTCATAAGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACATTGTGTATGTTTACACATTCATGCATGAGTATTCATAAGTAA  750

seq1  CATAAAATAAATAAATA-TTTTCAAAATGATTATTTCTGAGTCTGAATAC  797
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  CATAAAATTAATAAATATTTTTCAAAATGATTATTTCTGAGTCTGAATAC  800

seq1  ACACTGG-CCTTGAGATTTTCTTTTTTTTATCTTTTATTTTTTGTATTAG  846
      ||||||| ||||||||||||| |||||||||| |||| ||||||||||||
seq2  ACACTGGCCCTTGAGATTTTC-TTTTTTTATC-TTTAATTTTTGTATTAG  848

seq1  ATATTTTCTTTATATACATTTCAAATGCTATCCAGAAACTTCCCTATACC  896
      ||||||||||||||||||||   ||||||||||| |||||||| ||||||
seq2  ATATTTTCTTTATATACATT--CAATGCTATCCATAAACTTCCTTATACC  896

seq1  CTCCCCCTGCCCTGCTTCCCTACCCACCCACTCCTGCTT  935
      |||||||||||| ||||||||| ||| ||||||||||||
seq2  CTCCCCCTGCCCAGCTTCCCTA-CCAACCACTCCTGCTT  934