BAC Information

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BAC

Clone NameB6Ng01-062M21
Chromosome12 (Build37)8 (Build37)
Map Location 120,490,347 - 120,490,78755,866,933 - 55,867,967
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8
Downstream geneEG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062M21.bB6Ng01-062M21.g
ACCDH883086DH883087
length1,0891,026
definitionDH883086|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M21, 5' end.DH883087|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,490,347 - 120,490,787)(55,866,933 - 55,867,967)
sequence
gaattccatgaagtcattgtttttaatagctgagtagtactccattgtgt
aaacgtaccacattttctgtatccattcctttgttgaaggacatctggat
cctttccagtttctggctattaaaaataaggctgctatacatgtagtgga
acctgtgtccttattatgtgttggagcattttctgggcatatatccagga
gtagtattgctgggtcctcaggtagtactatgtccaattttgagtgcctg
ggagctctgatttccagagtgcttgtaccagcttgcaattccaccagcaa
tggaggagttttcctctttcttcacatccttgccagcatctgctgtcacc
tgagtttttgattttagccattctgaatggtctgaggtggaatctcagga
atgttttgattagcattttcctgatgactaagaatgttgaacatttttta
ggtgtttcttagccattcggtattccacagttgagaattctttgtttagc
tccgtatcccatttttaaaatagggttatttggttctctagaatctatct
tcttgaatttctttgtatatattggaaattagccctctatcagatatagg
gttggtaaagatcttttcccaatctgttggttgccattttgtcctactga
tagtgtcctttgccttacagaagctttacaattttatgaggtcccatttg
tcaatttttgatcgtagagcataagatattgatgctctgtacaggaaaat
ttcccctgtgcccatgtactggaggctcttctcaactttttcctctataa
gtttcagtgtatctggttttatgtggaggtccttgatccacttgaacttg
atctttgtacaaggagatgagaatggatcaatttgcattcttctacacgt
taactcccagttgaaccagcaccatttgttgaaatgctgtctttctccac
tggatgttttagctcctttgtcaaagatcaagtcaccatatgtgtgtggg
taatttctgggtctcaatctattccatgatatacctgcctgccactgtac
aatacatgagtgtttttttgtttgttttgtttggttttg
gaattcactttgtagaccagactggccttgaactcagaaatctgcctgcc
tctgcctcctgagtgctgggattagaggtgtgtgccaccacgcctggcgg
gaactcttatacacatgcactcacacatatttaagtaaagcagtgactaa
cacacttaggggaaaaaaatttaaatattttgtcctatctctttcctgga
ctctgaaattccacagttggagaaacaggaatggtagttaatgttaacct
tgaagctaaaatatttatatgctcggaaaatacttggcccctgcattttt
caatgtagattattttctctaacatttttttttcagaaaagtttaaggca
aaatggaagtgttggtagccaaaccaaggaagaagacctcttatctgaat
ttccctagtttgtacagaacttattttgttttgtgagaattggccacatg
cgtcatagatgtgatgactataaattattcagatgattggattgacaatt
atgctcacccttccacagaggtagagtaagaagttctcttacaatcagtg
agtactatgctcatcctcacagtcccatttcctttcattactttttttcc
tgttttctttggttttataagagacaaggtttatttgtgtagccctggtg
tcctgaaactcactccatagtccaggccagcctccaattcagagatctgc
ctgcttctgcctcctgagtgctgggattaaaagtatgtgccacaacctcc
tggttaaattttcaattcccacaccagaaaaagaaagttacagcctgctc
ggacagtgcaacattttcctgtactgttttctctgttatcccaggaccct
aaactccatttctgagtcactcattaataacttaccacctgcaaataaaa
ggcattaagaagtgaaattctgtttttacaagtgaaaggagaggaaaatg
taacgtcataataaagtagtttctatctctatcctgtttctgtgcaactt
ttcctgcctctctcgtggctcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120490347_120490787
seq2: B6Ng01-062M21.b_832_1136

seq1  ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTT  50
      ||||| |||||||||||||||||||| ||||||||||||||||| |||||
seq2  ACTTTTTCCTCTATAAGTTTCAGTGTATCTGGTTTTATGTGGAGGTCCTT  50

seq1  AATCCATTTTAAACTGTATATTTTTTACAATTAG-TGGCACCTTATAAAA  99
       |||||  || ||||  ||  ||| |||||  || ||  |    || || 
seq2  GATCCA-CTTGAACTTGAT-CTTTGTACAAGGAGATGAGAATGGATCAA-  97

seq1  TCTCTAAAATATTTGAAACATTAACCCCCCATCTATGGAGTGAAACTTCT  149
        | |  | | ||  | || ||||| |||         |||  |||    
seq2  --TTTGCATTCTTCTACACGTTAACTCCC---------AGTTGAAC----  132

seq1  AAAGATTCAGAGATATAGAGCATTTACTTATAAATATGCGTGTCTCATTA  199
             |||        | |||    || |  | |||| |||||     
seq2  -------CAG-------CACCAT----TTGTTGAAATGC-TGTCT-----  158

seq1  TGACATTTAATTATAACACATGATGGAAACAATATTTTGGATTCTTAGAA  249
                || |  |||  ||||         |||| | | |||    
seq2  ----------TTCT-CCACTGGATG---------TTTTAGCTCCTT----  184

seq1  CCCTGTATAAGCTAAAG----CAGATGAAGAGATGAGTAGGT--TTTTAG  293
         |||  ||| | |||    || |||      || || |||  |||  |
seq2  ---TGTCAAAGATCAAGTCACCATATG------TGTGTGGGTAATTTCTG  225

seq1  GTACGTATGAATTTTATTTTTCCATTTTATAGGTGGATGCTCGGTAACTT  343
      |   || | |||     | ||||||  ||||  ||  |||          
seq2  G---GTCTCAAT----CTATTCCATGATATACCTGCCTGC----------  258

seq1  TTGTCATTTGTCAGCTGTAGTCCTGCAGTAAAGATCTTGTTGCTGCCAAC  393
                 || |||||                           ||| 
seq2  -----------CA-CTGTA---------------------------CAAT  269

seq1  AACTGGTTTATTATGAAAAGACTTTTTTTGTTTG-TTTGTTTGGTTTTG  441
      |  ||             ||  |||||||||||| ||||||||||||||
seq2  ACATG-------------AGTGTTTTTTTGTTTGTTTTGTTTGGTTTTG  305

seq1: chr8_55866933_55867967
seq2: B6Ng01-062M21.g_69_1094 (reverse)

seq1  TAGAAGAGCCAACGAGAGAGGCAAGGAAAAAGTTTGCACAGAAACAGGAT  50
      |||||||||| ||||||||||| |||||||   |||||||||||||||||
seq2  TAGAAGAGCC-ACGAGAGAGGC-AGGAAAA--GTTGCACAGAAACAGGAT  46

seq1  AGAGATAGAAACTACTTTATTATTGACGTTACATTTTTCCTCTTCCTTTT  100
      |||||||||||||||||||||| |||||||||| |||||||||  | |||
seq2  AGAGATAGAAACTACTTTATTA-TGACGTTACA-TTTTCCTCT--CCTTT  92

seq1  CACTTGTAAAAAACAGAATTTCACTTCTTAATGCCTTTTATTTGCAGGTG  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGT-AAAAACAGAATTTCACTTCTTAATGCCTTTTATTTGCAGGTG  141

seq1  GTAAGTTATTAATGAGTGACTCAGAAATGGAGTTTAGGGTCCTGGGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTATTAATGAGTGACTCAGAAATGGAGTTTAGGGTCCTGGGATAA  191

seq1  CAGAGAAAACAGTACAGGAAAATGTTGCACTGTCCGAGCAGGCTGTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAACAGTACAGGAAAATGTTGCACTGTCCGAGCAGGCTGTAACT  241

seq1  TTCTTTTTCTGGTGTGGGAATTGAAAATTTAACCAGGAGGTTGTGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTGGTGTGGGAATTGAAAATTTAACCAGGAGGTTGTGGCACA  291

seq1  TACTTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGCAGATCTCTGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGCAGATCTCTGAATT  341

seq1  GGAGGCTGGCCTGGACTATGGAGTGAGTTTCAGGACACCAGGGCTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGCCTGGACTATGGAGTGAGTTTCAGGACACCAGGGCTACACA  391

seq1  AATAAACCTTGTCTCTTATAAAACCAAAGAAAACAGGAAAAAAAGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCTTGTCTCTTATAAAACCAAAGAAAACAGGAAAAAAAGTAATG  441

seq1  AAAGGAAATGGGACTGTGAGGATGAGCATAGTACTCACTGATTGTAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGGGACTGTGAGGATGAGCATAGTACTCACTGATTGTAAGAG  491

seq1  AACTTCTTACTCTACCTCTGTGGAAGGGTGAGCATAATTGTCAATCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTACTCTACCTCTGTGGAAGGGTGAGCATAATTGTCAATCCAAT  541

seq1  CATCTGAATAATTTATAGTCATCACATCTATGACGCATGTGGCCAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAATAATTTATAGTCATCACATCTATGACGCATGTGGCCAATTCT  591

seq1  CACAAAACAAAATAAGTTCTGTACAAACTAGGGAAATTCAGATAAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAAAATAAGTTCTGTACAAACTAGGGAAATTCAGATAAGAGGT  641

seq1  CTTCTTCCTTGGTTTGGCTACCAACACTTCCATTTTGCCTTAAACTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTTGGTTTGGCTACCAACACTTCCATTTTGCCTTAAACTTTTC  691

seq1  TGAAAAAAAAATGTTAGAGAAAATAATCTACATTGAAAAATGCAGGGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAATGTTAGAGAAAATAATCTACATTGAAAAATGCAGGGGCC  741

seq1  AAGTATTTTCCGAGCATATAAATATTTTAGCTTCAAGGTTAACATTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTCCGAGCATATAAATATTTTAGCTTCAAGGTTAACATTAACT  791

seq1  ACCATTCCTGTTTCTCCAACTGTGGAATTTCAGAGTCCAGGAAAGAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCTGTTTCTCCAACTGTGGAATTTCAGAGTCCAGGAAAGAGATA  841

seq1  GGACAAAATATTTAAATTTTTTTCCCCTAAGTGTGTTAGTCACTGCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAATATTTAAATTTTTTTCCCCTAAGTGTGTTAGTCACTGCTTTA  891

seq1  CTTAAATATGTGTGAGTGCATGTGTATAAGAGTTCCCGCCAGGCGTGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATGTGTGAGTGCATGTGTATAAGAGTTCCCGCCAGGCGTGGTG  941

seq1  GCACACACCTCTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCTCTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCT  991

seq1  GAGTTCAAGGCCAGTCTGGTCTACAAAGTGAATTC  1035
      |||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGTCTGGTCTACAAAGTGAATTC  1026