BAC Information

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BAC

Clone NameB6Ng01-063C08
Chromosome8 (Build37)
Map Location 9,102,495 - 9,139,262
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28, Lig4, Abhd13, Tnfsf13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063C08.bB6Ng01-063C08.g
ACCDH883329DH883330
length1,0001,074
definitionDH883329|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C08, 5' end.DH883330|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,102,495 - 9,103,086)(9,138,172 - 9,139,262)
sequence
gaattcacatggaatctgagtgagtgtaggaaagataaagcgatcagttg
tcaggtaacagtgatatccccactgcatcatcttgttcccgacagtatat
atacacacacacacatatatacatacacacacccacatatatatatatac
acacatatacattcatatacacacatatacatacacacacatacacacac
atacacatacacacatacacatacacatacacacatattcacatacatat
tcacatacacatatacacatacacatatgtacacatatatacacacatac
atatatatacacacacacatatatatacacacatatacacactatatatg
tgtacatacatatatatgtatatatgtatttgtatatctatatatctata
tatgtttgtatatattgaccaaacaccataacaaaaaatgacttggggag
gaaaggtttattttgcttaggtgtcctagccatagcctgtcataaactgt
atctttatcatattcacccccactctgctatctaacacccatctcaccat
ctccttctcaactccaagtcctctttatctctttaaaaataatccactga
aatgagttagtgctgtcaataagcacatgagtgtgacatcatcctcaggg
ggcatagacaacctctcaggggtcatctccctcaaaaaagtgactctccc
tgacccagaagccatcggctgccattagctccttagctacggtgggacca
tagggaaattttattttaattgtttttaattttattttaataatagcaaa
atatatttatcccagagccctgtaaatatgctgtcttgttatacgaaccc
tgaatttttcagtggtgatcgttatcaatataaacaaggttgctcttcca
tcaaaccaaatgaaagaatcagtcaaagccaggagatgatgtccatactt
tattattattattaaataaagctgtagtacagcctgtcaattccttttaa


gaattcagaaactggctcaaatcccttagacctcttcagatttggacaga
gatttttgggccaatgtaatttcttaagatgttcactctgtcacagtgac
agagtgtcttctctcagtggaaatcggggggggggtggcagctggccttc
tcctgtcagagtatgctgggaggtagcctcctgatgccctatgtggactt
tggtgctccggggaggccccctccctaagcccactgcattgctgactaca
tagagcaggaaagagcatgctagcaagctctggcctccagattctttcag
ctcaatgagtataaatcaccgattttgtgtgtgctgtctagccagtatgt
ttcccatgtctacatcatcttctaggtatctatgaagttctgaggacctt
gacacaggtctgtcaaactgagctagaaaacacctgatttcacaaatcat
ctctcaacaacttcttcttcttcttcttcttcttcttcttcttcttcttc
tccttctccttctccttctccttctccttctccttctccttctccttctc
cttctccttctccttctccttctccttctccttctccttctccttctcct
tctccttctccttctccttctccttctccttctccttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttttcatttcaaacttaactcac
aacctcctggtcagagagtctcattaacctttccacactggtaagtggtt
ttccatagtgaaagtcaattctgtatagagtttggccctttcaatgtgca
tagatgtgtctgattcattctatacaaagagcatatattcatatgcccat
aagttctgcttaatgaattccaaatttccatgggtggtttatttcttgag
gacttaagtacctttgtgtgttacgttaccctactcctgtggcttgcact
gatttactggatattaatttaaaagatacaaaagaagacattccagcaca
atgctcactctcactcttgattggccttcgagactgcaagaagggtgagg
atcgggtgggtgtttggacggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9102495_9103086
seq2: B6Ng01-063C08.b_48_639

seq1  GAATTCACATGGAATCTGAGTGAGTGTAGGAAAGATAAAGCGATCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAATCTGAGTGAGTGTAGGAAAGATAAAGCGATCAGTTG  50

seq1  TCAGGTAACAGTGATATCCCCACTGCATCATCTTGTTCCCGACAGTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAACAGTGATATCCCCACTGCATCATCTTGTTCCCGACAGTATAT  100

seq1  ATACACACACACACATATATACATACACACACCCACATATATATATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACATATATACATACACACACCCACATATATATATATAC  150

seq1  ACACATATACATTCATATACACACATATACATACACACACATACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATACATTCATATACACACATATACATACACACACATACACACAC  200

seq1  ATACACATACACACATACACATACACATACACACATATTCACATACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATACACACATACACATACACATACACACATATTCACATACATAT  250

seq1  TCACATACACATATACACATACACATATGTACACATATATACACACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACACATATACACATACACATATGTACACATATATACACACATAC  300

seq1  ATATATATACACACACACATATATATACACACATATACACACTATATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACACACACACATATATATACACACATATACACACTATATATG  350

seq1  TGTACATACATATATATGTATATATGTATTTGTATATCTATATATCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATACATATATATGTATATATGTATTTGTATATCTATATATCTATA  400

seq1  TATGTTTGTATATATTGACCAAACACCATAACAAAAAATGACTTGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTATATATTGACCAAACACCATAACAAAAAATGACTTGGGGAG  450

seq1  GAAAGGTTTATTTTGCTTAGGTGTCCTAGCCATAGCCTGTCATAAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTTATTTTGCTTAGGTGTCCTAGCCATAGCCTGTCATAAACTGT  500

seq1  ATCTTTATCATATTCACCCCCACTCTGCTATCTAACACCCATCTCACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCATATTCACCCCCACTCTGCTATCTAACACCCATCTCACCAT  550

seq1  CTCCTTCTCAACTCCAAGTCCTCTTTATCTCTTTAAAAATAA  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCAACTCCAAGTCCTCTTTATCTCTTTAAAAATAA  592


seq1: chr8_9138172_9139262
seq2: B6Ng01-063C08.g_69_1142 (reverse)

seq1  TGACCCTCCAAACACACACCCGATCCCTCACCCCTTCTCTGCAGTCTCTG  50
      ||||| ||||||||| |||||||| ||||| ||||||| ||||||||| |
seq2  TGACCGTCCAAACACCCACCCGAT-CCTCA-CCCTTCT-TGCAGTCTC-G  46

seq1  AAGGGCTATTCAGAGTTGAGAGTGAGCATTGTGCTGGGAATTGTCTTTCT  100
      |||| | ||  |||| |||||||||||||||||||||  | ||||||   
seq2  AAGGCCAATCAAGAG-TGAGAGTGAGCATTGTGCTGG--AATGTCTT--C  91

seq1  TTTTGTATCTTTTTAAATTAAATACTCCAGTTTAAATCAGTGGCAAGCCA  150
      ||||||||| ||||||||| |||| |||||  ||||||||| ||||||| 
seq2  TTTTGTATC-TTTTAAATT-AATA-TCCAG--TAAATCAGT-GCAAGCC-  134

seq1  ACAGGAGTAGGGTAACGTAACACACAAAGGTACTTAAGTCCTCAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTAGGGTAACGTAACACACAAAGGTACTTAAGTCCTCAAGAAAT  184

seq1  AAACCACCCATGGAAATTTGGAATTCATTAAGCAGAACTTTATGGGCATA  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAACCACCCATGGAAATTTGGAATTCATTAAGCAGAAC-TTATGGGCATA  233

seq1  TGAATATATGCTCTTTGTATAGAATGAATCAGACACATCTATGCACATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATGCTCTTTGTATAGAATGAATCAGACACATCTATGCACATTG  283

seq1  AAAGGGCCAAACTCTATACAGAATTGACTTTCACTATGGAAAACCACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCAAACTCTATACAGAATTGACTTTCACTATGGAAAACCACTTA  333

seq1  CCAGTGTGGAAAGGTTAATGAGACTCTCTGACCAGGAGGTTGTGAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGGAAAGGTTAATGAGACTCTCTGACCAGGAGGTTGTGAGTTAA  383

seq1  GTTTGAAATGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  433

seq1  GAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGG  483

seq1  AGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAG  533

seq1  AAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAA  583

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTTGAGAGATGATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTTGAGAGATGATTTGT  633

seq1  GAAATCAGGTGTTTTCTAGCTCAGTTTGACAGACCTGTGTCAAGGTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGGTGTTTTCTAGCTCAGTTTGACAGACCTGTGTCAAGGTCCTC  683

seq1  AGAACTTCATAGATACCTAGAAGATGATGTAGACATGGGAAACATACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCATAGATACCTAGAAGATGATGTAGACATGGGAAACATACTGG  733

seq1  CTAGACAGCACACACAAAATCGGTGATTTATACTCATTGAGCTGAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGCACACACAAAATCGGTGATTTATACTCATTGAGCTGAAAGAA  783

seq1  TCTGGAGGCCAGAGCTTGCTAGCATGCTCTTTCCTGCTCTATGTAGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGCCAGAGCTTGCTAGCATGCTCTTTCCTGCTCTATGTAGTCAG  833

seq1  CAATGCAGTGGGCTTAGGGAGGGGGCCTCCCCGGAGCACCAAAGTCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGTGGGCTTAGGGAGGGGGCCTCCCCGGAGCACCAAAGTCCACA  883

seq1  TAGGGCATCAGGAGGCTACCTCCCAGCATACTCTGACAGGAGAAGGCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCATCAGGAGGCTACCTCCCAGCATACTCTGACAGGAGAAGGCCAG  933

seq1  CTGCCACCCCCCCCCCGATTTCCACTGAGAGAAGACACTCTGTCACTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCCCCCCCCCGATTTCCACTGAGAGAAGACACTCTGTCACTGTG  983

seq1  ACAGAGTGAACATCTTAAGAAATTACATTGGCCCAAAAATCTCTGTCCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAACATCTTAAGAAATTACATTGGCCCAAAAATCTCTGTCCAA  1033

seq1  ATCTGAAGAGGTCTAAGGGATTTGAGCCAGTTTCTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGAGGTCTAAGGGATTTGAGCCAGTTTCTGAATTC  1074


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