BAC Information

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BAC

Clone NameB6Ng01-063F16
Chromosome8 (Build37)
Map Location 46,616,129 - 46,740,598
singlet/doubletdoublet
Overlap geneSorbs2
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063F16.bB6Ng01-063F16.g
ACCDH883477DH883478
length1,135821
definitionDH883477|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F16, 5' end.DH883478|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,616,129 - 46,617,306)(46,739,777 - 46,740,598)
sequence
gaattctgacagtcagtagaatgaaattcttccactctcgatatctaatc
atcattgctatctgacaagttcctgaagtcccaccctctatatcttatca
ctctggcctgccctctgcaaggttctttttggtttagttttatttttaaa
taaagtagcagcagtagaagtctgtctagccttgacgtttcctctttcat
tttctacgcactgaccccccaactctgctcctgatctacaaaattctatt
tgcacgtatactggacttgagtgtagtttcttatctctatgacagaacca
gagttttagttgtcttctgaataaactcggcctcattgtcttcaacaatt
tggggagtgaatttttttgcagtaaaatactcaccataacagactataag
attttcaaaatgaaactttctccttagctctttaattagtgctgagggag
gcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtg
agctccaggacagccagggatactcagagaaaccctgtctcgaaaacaag
caagaaagcaaacaaacaaaaggaaagagttttcttttctctctcttctc
cctcactccttatttttcttcccctgactcctgtattgaatagcattgaa
agttcctttactcattccttagggcaaccataatgtattcagttagatag
agaatgttcacataattatattgtgtaaagtcaagatgattttatcactg
taaacaattctgggctagtcttcacttaaccagtaatgcctctaacttca
caaatcatgatgttatctatcctattacaagacatgatattacagggaac
ttcccagaggcatgcatttcatagggcttgggattttaaaaatatattaa
taaattaattaataaaaataaattcaaaacattcatatgcatgtaaggtt
atgttctttcagagatatctgcctagtttagattaggaactatgattttt
tttatgttctgaacaaagtgctatcataacagttcacagttagattgtgg
ttcgatggaggttcagaaaggaaagttcattagatagagatcaaagatag
atttccatgtaaagtaagagaagggctatgtttaa
gaattcttcgtcatcgttcatttcctactatttggggtgaacctcgggag
gaaggaagtgaaggtcgttttcccaggaatattgttttccagagttcacc
cccagagaaaagtaaattgtgctgtagccacctgagggctttcatagcct
ccctcagctgagtgacaatgtctaatctgggagaacaatgtgtcattctc
ttaggctaatgctttagtctttggggcagcgagaccctccaaagcactgg
caccgatttcaaggttgtattgagaagaatgtcaatcaaattctcctccc
acagaggctacagaaatctgagagagctgaattaaaggaaggcatccaaa
ggactgtaaaataaagcgggaggtaggtggggttgcttgtgtcagccatc
ctcatcaacctaaagagtgtgcaagaaaaacacaactcttcattttatac
tgcagtcagcgtccgtccaaggccatcctccggtctgctgtgcaccgaag
taagcatccatggcctctgagttgggaaatagaggcccaagatgggcctg
atcactcgcaaagccctcttccacacttgcatcctgagctaaactgtaag
tccttaccagccttagaatctgtttctactcaggttgtatacgttcctct
gagagtttatcacatcatatttctgattacttccactgcctagttgtggg
tggtatggtaagtttatgggttttcaaagattattttgtgcccatacata
ccatcatgccctgagacttgggttttatcgaatgaagctaaaatcttcca
tgagaggtaagctaatctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46616129_46617306
seq2: B6Ng01-063F16.b_47_1181

seq1  GAATTCTGACAGTCAGTAGAATGAAATTCTTCCACTCTCGATATCTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAGTCAGTAGAATGAAATTCTTCCACTCTCGATATCTAATC  50

seq1  ATCATTGCTATCTGACAAGTTCCTGAAGTCCCACCCTCTATATCTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTATCTGACAAGTTCCTGAAGTCCCACCCTCTATATCTTATCA  100

seq1  CTCTGGCCTGCCCTCTGCAAGGTTCTTTTTGGTTTAGTTTTATTTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCTGCCCTCTGCAAGGTTCTTTTTGGTTTAGTTTTATTTTTAAA  150

seq1  TAAAGTAGCAGCAGTAGAAGTCTGTCTAGCCTTGACGTTTCCTCTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGCAGCAGTAGAAGTCTGTCTAGCCTTGACGTTTCCTCTTTCAT  200

seq1  TTTCTACGCACTGACCCCCCAACTCTGCTCCTGATCTACAAAATTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACGCACTGACCCCCCAACTCTGCTCCTGATCTACAAAATTCTATT  250

seq1  TGCACGTATACTGGACTTGAGTGTAGTTTCTTATCTCTATGACAGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTATACTGGACTTGAGTGTAGTTTCTTATCTCTATGACAGAACCA  300

seq1  GAGTTTTAGTTGTCTTCTGAATAAACTCGGCCTCATTGTCTTCAACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTAGTTGTCTTCTGAATAAACTCGGCCTCATTGTCTTCAACAATT  350

seq1  TGGGGAGTGAATTTTTTTGCAGTAAAATACTCACCATAACAGACTATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTGAATTTTTTTGCAGTAAAATACTCACCATAACAGACTATAAG  400

seq1  ATTTTCAAAATGAAACTTTCTCCTTAGCTCTTTAATTAGTGCTGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAATGAAACTTTCTCCTTAGCTCTTTAATTAGTGCTGAGGGAG  450

seq1  GCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  500

seq1  AGCTCCAGGACAGCCAGGGATACTCAGAGAAACCCTGTCTCGAAAACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGACAGCCAGGGATACTCAGAGAAACCCTGTCTCGAAAACAAG  550

seq1  CAAGAAAGCAAACAAACAAAAGGAAAGAGTTTTCTTTTCTCTCTCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCAAACAAACAAAAGGAAAGAGTTTTCTTTTCTCTCTCTTCTC  600

seq1  CCTCACTCCTTATTTTTCTTCCCCTGACTCCTGTATTGAATAGCATTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCCTTATTTTTCTTCCCCTGACTCCTGTATTGAATAGCATTGAA  650

seq1  AGTTCCTTTACTCATTCCTTAGGGCAACCATAATGTATTCAGTTAGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTACTCATTCCTTAGGGCAACCATAATGTATTCAGTTAGATAG  700

seq1  AGAATGTTCACATAATTATATTGTGTAAAGTCAAGATGATTTTATCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCACATAATTATATTGTGTAAAGTCAAGATGATTTTATCACTG  750

seq1  TAAACAATTCTGGGCTAGTCTTCACTTAACCAGTAATGCCTCTAACTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTCTGGGCTAGTCTTCACTTAACCAGTAATGCCTCTAACTTCA  800

seq1  CAAATCATGATGTTATCTATCCTATTACAAGACATGATATTACAGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATGATGTTATCTATCCTATTACAAGACATGATATTACAGGGAAC  850

seq1  TTCCCAGAGGCATGCATTTCATAGGGCTTGGGATTTTAAAAATATATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGGCATGCATTTCATAGGGCTTGGGATTTTAAAAATATATTAA  900

seq1  TAAATTAATTAATAAAAAATAAATTCAAAACATTCATATGCATGTTAAGG  950
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TAAATTAATTAAT-AAAAATAAATTCAAAACATTCATATGCATG-TAAGG  948

seq1  GTTAATGTTCCTTTCAGAGATATCTGCCTAGTTTTAGAATTTAGAAACTA  1000
        | ||||| ||||||||||||||||||||| ||||||  |||| |||||
seq2  --TTATGTT-CTTTCAGAGATATCTGCCTAG-TTTAGA--TTAGGAACTA  992

seq1  TGATTTTTTTTTAATTGTTCTGGAAACCAAAGGTGCTAATCCATTAACAG  1050
      |||||||||||    |||||||  |||  || ||||| |||   ||||||
seq2  TGATTTTTTTT---ATGTTCTG--AAC--AAAGTGCT-ATC--ATAACAG  1032

seq1  TTCACAGTTTAGGAATTGTGGTTTCCGAATTGGGAGGTTCAGGAAAAAGG  1100
      ||||||| ||||  |||||||||  |||    ||||||||||   |||||
seq2  TTCACAG-TTAG--ATTGTGGTT--CGA---TGGAGGTTCAG---AAAGG  1071

seq1  AGAAGTTCATTAGTAGAGAGAATTCAAAAGATTAGAAATATCCCCATGTA  1150
      | ||||||||||| | |||||  ||||      ||| | ||  |||||||
seq2  A-AAGTTCATTAG-ATAGAGA--TCAA------AGATAGATTTCCATGTA  1111

seq1  AAGTGTAAAGAGAGGGGCTAGTGTTTAA  1178
      ||||   |||||| |||||| |||||||
seq2  AAGT---AAGAGAAGGGCTA-TGTTTAA  1135

seq1: chr8_46739777_46740598
seq2: B6Ng01-063F16.g_68_888 (reverse)

seq1  GATAGTATTAGCTTAACCTCTCATGGAAGATCTTAGCTTCACTCGATAAA  50
      ||||| |||||||| |||||||||||||||| ||||||||| ||||||||
seq2  GATAG-ATTAGCTT-ACCTCTCATGGAAGATTTTAGCTTCATTCGATAAA  48

seq1  A-CCAAGTCTCAGGGCATGATGGTATGTATGGGCACAAAATAATCTTCTG  99
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCCAAGTCTCAGGGCATGATGGTATGTATGGGCACAAAATAATCTT-TG  97

seq1  AAAACCCAT-AACTTACCATACCACCCACAACTAGGCAGTGGAAGTAATC  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCATAAACTTACCATACCACCCACAACTAGGCAGTGGAAGTAATC  147

seq1  AGAAATATGATGTGATAAACTCTCAGAGGAACGTATACAACCTGAGTAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGATGTGATAAACTCTCAGAGGAACGTATACAACCTGAGTAGA  197

seq1  AACAGATTCTAAGGCTGGTAAGGACTTACAGTTTAGCTCAGGATGCAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTCTAAGGCTGGTAAGGACTTACAGTTTAGCTCAGGATGCAAGT  247

seq1  GTGGAAGAGGGCTTTGCGAGTGATCAGGCCCATCTTGGGCCTCTATTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAGGGCTTTGCGAGTGATCAGGCCCATCTTGGGCCTCTATTTCC  297

seq1  CAACTCAGAGGCCATGGATGCTTACTTCGGTGCACAGCAGACCGGAGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGAGGCCATGGATGCTTACTTCGGTGCACAGCAGACCGGAGGAT  347

seq1  GGCCTTGGACGGACGCTGACTGCAGTATAAAATGAAGAGTTGTGTTTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGACGGACGCTGACTGCAGTATAAAATGAAGAGTTGTGTTTTTC  397

seq1  TTGCACACTCTTTAGGTTGATGAGGATGGCTGACACAAGCAACCCCACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACTCTTTAGGTTGATGAGGATGGCTGACACAAGCAACCCCACCT  447

seq1  ACCTCCCGCTTTATTTTACAGTCCTTTGGATGCCTTCCTTTAATTCAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCGCTTTATTTTACAGTCCTTTGGATGCCTTCCTTTAATTCAGCT  497

seq1  CTCTCAGATTTCTGTAGCCTCTGTGGGAGGAGAATTTGATTGACATTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGATTTCTGTAGCCTCTGTGGGAGGAGAATTTGATTGACATTCTT  547

seq1  CTCAATACAACCTTGAAATCGGTGCCAGTGCTTTGGAGGGTCTCGCTGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACAACCTTGAAATCGGTGCCAGTGCTTTGGAGGGTCTCGCTGCC  597

seq1  CCAAAGACTAAAGCATTAGCCTAAGAGAATGACACATTGTTCTCCCAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACTAAAGCATTAGCCTAAGAGAATGACACATTGTTCTCCCAGAT  647

seq1  TAGACATTGTCACTCAGCTGAGGGAGGCTATGAAAGCCCTCAGGTGGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTGTCACTCAGCTGAGGGAGGCTATGAAAGCCCTCAGGTGGCTA  697

seq1  CAGCACAATTTACTTTTCTCTGGGGGTGAACTCTGGAAAACAATATTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAATTTACTTTTCTCTGGGGGTGAACTCTGGAAAACAATATTCCT  747

seq1  GGGAAAACGACCTTCACTTCCTTCCTCCCGAGGTTCACCCCAAATAGTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACGACCTTCACTTCCTTCCTCCCGAGGTTCACCCCAAATAGTAG  797

seq1  GAAATGAACGATGACGAAGAATTC  822
      ||||||||||||||||||||||||
seq2  GAAATGAACGATGACGAAGAATTC  821