BAC Information

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BAC

Clone NameB6Ng01-063K02
Chromosome8 (Build37)
Map Location 88,549,597 - 88,685,672
singlet/doubletdoublet
Overlap genePhkb, LOC671665
Upstream gene2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798
Downstream geneLOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063K02.bB6Ng01-063K02.g
ACCDH883665DH883666
length1,0891,168
definitionDH883665|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K02, 5' end.DH883666|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,549,597 - 88,550,693)(88,684,473 - 88,685,672)
sequence
gaattccttcccccaacattctgtctttatcaagaaagaaagtgagggta
attcatttctgaaactcagtagagttccctaatccaggcatccaattatt
caggaccaaaagaaacataactcaaggcttcagagagatggcccagttaa
gagcacacactgctcttccagaggaccgaggtttggttcctcacatctag
cagctaagaactgctgataactctggctccagtctgcacaggcacctgca
ctcacatgcttatacacacacacacacacacacacacacacacacacatt
cacctatacacagtcactcacacatgtagttaaaaaataatattgtacag
agaagcatagtataaattgatatgggaatcagtcatcagtcacaggcaca
tgatcctttttatgtgttttttaatatgaagcagagtaccctcttaattc
cttcctctcccatcccaattaaaagagtagctagagactctgctttttct
ttcccttatttttttgaaattgatcttggcatcactgatgccctttgcca
cagtttggtggctgaggtgagtgtgagacatgactttccctaattataga
tggtcttctttcaagggtcaggtctaatggcagttcactgcttctctcta
tcatgggaggacctgactgcatacattgtacggttccccatcaagggcac
catttattcaccgtctttctgtttgtgaagatctggcctgctttcttctt
tgccctcacgtcggttgtacgccgtgcagcaagtcttttaaataaagtag
tggacagcctggccccatccattactaatgttttagtgcagggcaaacag
gtaagtatctgcttttcacactcacagacacaacaatttctagttaggac
acttacatctggtataggtcggtgtcatagactgcccacaaagagattac
agtgagtggtttgggatttctcaaagtctctttcctcctgcaaaacaata
gcgtgtacagtctgagagctgcagagtacttagtgggccatctcactttg
tcctataccctggactataacttcagtcccaagtttgct
gaattcaagggagctttaagggaagcatctggccagtatgtactgggaac
agttttggcggggatgtgatccaagtatataaagagatgtcatggccttc
cttcctacttcccagcatccctaagaacatacaagcccaggcttaactat
tccagaaactctcccccttattcctttgccctctctttctgaaccctttc
atcttttaatgaaagatacagagatgaatgagatgaatcagaagcagtct
ttccagctgtgatgcccacagagaaaaccactaggtgctcactaataact
attctgccatctctcatggtagactcagcttcaccagccttagcccacaa
gatttgaattgctgaataaaaaaggaataaacgcatttatttttattgta
ctgaagagtctctgttcaaaccttaatacatactctaatgggcaactcat
ttctgatgtggtctcaggtccagggttcaatgttgctggagattcaataa
tgtatttgctacagttttaaatattcttgagtaaataaatactgtagcca
gtcttcagctgccactggtgtgaatggaaaggagcttgagagtccatgaa
aagattgctctaagggagacgtacagttagcaggtatggtttcctgttct
cccactttaagaagaatatggcagtaaccagattcctctgaagccaggta
gatgactaagttctagccaagaggatgtgaatatgagaaagtttcagatt
gagctcctataagggggtgccctctgctatcttcatctatagtgcaaaca
cagagggggacaacaggcagcagtgtggagatagcagaaaagtagcctac
agtaagataggggagaagttctatcttattcaaaatacctttgatgggta
cagagagagatgtcactttgacagttttagtctatttcttgtcataataa
aagagtgagtttaatacttgggttttgtttgtttatgagagtttatcagc
tcagttttgagctgaagtcaaatcagagatcagctactggtttctggtgg
gatgcagtagttggtgggacaagactggaattgcttgatgaggagtcggg
gaaattagctcaaggttttgttcacatagtatggcagtttctgggagcta
gccagtctgagaaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88549597_88550693
seq2: B6Ng01-063K02.b_43_1131

seq1  GAATTCCTTCCCCCAACATTCTGTCTTTATCAAGAAAGAAAGTGAGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCCCAACATTCTGTCTTTATCAAGAAAGAAAGTGAGGGTA  50

seq1  ATTCATTTCTGAAACTCAGTAGAGTTCCCTAATCCAGGCATCCAATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCTGAAACTCAGTAGAGTTCCCTAATCCAGGCATCCAATTATT  100

seq1  CAGGACCAAAAGAAACATAACTCAAGGCTTCAGAGAGATGGCCCAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAAAAGAAACATAACTCAAGGCTTCAGAGAGATGGCCCAGTTAA  150

seq1  GAGCACACACTGCTCTTCCAGAGGACCGAGGTTTGGTTCCTCACATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACACTGCTCTTCCAGAGGACCGAGGTTTGGTTCCTCACATCTAG  200

seq1  CAGCTAAGAACTGCTGATAACTCTGGCTCCAGTCTGCACAGGCACCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGAACTGCTGATAACTCTGGCTCCAGTCTGCACAGGCACCTGCA  250

seq1  CTCACATGCTTATACACACACACACACACACACACACACACACACACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGCTTATACACACACACACACACACACACACACACACACACATT  300

seq1  CACCTATACACAGTCACTCACACATGTAGTTAAAAAATAATATTGTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATACACAGTCACTCACACATGTAGTTAAAAAATAATATTGTACAG  350

seq1  AGAAGCATAGTATAAATTGATATGGGAATCAGTCATCAGTCACAGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATAGTATAAATTGATATGGGAATCAGTCATCAGTCACAGGCACA  400

seq1  TGATCCTTTTTATGTGTTTTTTAATATGAAGCAGAGTACCCTCTTAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTTTTATGTGTTTTTTAATATGAAGCAGAGTACCCTCTTAATTC  450

seq1  CTTCCTCTCCCATCCCAATTAAAAGAGTAGCTAGAGACTCTGCTTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCCCATCCCAATTAAAAGAGTAGCTAGAGACTCTGCTTTTTCT  500

seq1  TTCCCTTATTTTTTTGAAATTGATCTTGGCATCACTGATGCCCTTTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTATTTTTTTGAAATTGATCTTGGCATCACTGATGCCCTTTGCCA  550

seq1  CAGTTTGGTGGCTGAGGTGAGTGTGAGACATGACTTTCCCTAATTATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGTGGCTGAGGTGAGTGTGAGACATGACTTTCCCTAATTATAGA  600

seq1  TGGTCTTCTTTCAAGGGTCAGGTCTAATGGCAGTTCACTGCTTCTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCTTTCAAGGGTCAGGTCTAATGGCAGTTCACTGCTTCTCTCTA  650

seq1  TCATGGGAGGACCTGACTGCATACATTGTACGGTTCCCCATCAAGGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAGGACCTGACTGCATACATTGTACGGTTCCCCATCAAGGGCAC  700

seq1  CATTTATTCACCGTCTTTCTGTTTGTGAAGATCTGGCCTGCTTTCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTCACCGTCTTTCTGTTTGTGAAGATCTGGCCTGCTTTCTTCTT  750

seq1  TGCCCTCAGGTCGGTTGTACGCCGTGCAGCAAGTCTTTTAAATAAAGTAG  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCACGTCGGTTGTACGCCGTGCAGCAAGTCTTTTAAATAAAGTAG  800

seq1  TGGACAGCCTGGCCCCATCCATTACTAATGTTTTAGTGCAGGGCAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCCTGGCCCCATCCATTACTAATGTTTTAGTGCAGGGCAAACAG  850

seq1  GTAAGTATCTGCTTTTCACACTCACAGACACAACAATTTCTAGTTAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATCTGCTTTTCACACTCACAGACACAACAATTTCTAGTTAGGAC  900

seq1  ACTTACATCTGGTATAGGTCGGTGTCATAGACTGCCCACAAAGAGATTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTTACATCTGGTATAGGTCGGTGTCATAGACTGCCCACAAAGAGATTA-  949

seq1  CAGTGAGTGGTTTGGGAATTTCTTCAAAAGTCTCTTTCCTCCTGCAAAAA  1000
      |||||||||||||||| ||||||   ||||||||||||||||||| ||||
seq2  CAGTGAGTGGTTTGGG-ATTTCT--CAAAGTCTCTTTCCTCCTGC-AAAA  995

seq1  CAATAGCGTGTACAGTCTGAGAGCTGCAGAGTACTTAGTGGGCCATCTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCGTGTACAGTCTGAGAGCTGCAGAGTACTTAGTGGGCCATCTCA  1045

seq1  CTTTTGTCCTATACCCTGGGACTATAACTTCAGTCCCCAAGTTTGCT  1097
      | ||||||||||||||| |||||||||||||||| ||||||||||||
seq2  C-TTTGTCCTATACCCT-GGACTATAACTTCAGT-CCCAAGTTTGCT  1089

seq1: chr8_88684473_88685672
seq2: B6Ng01-063K02.g_65_1232 (reverse)

seq1  GAATTTTCTCAGGACCTTGGCTAGCTCCCATGAACATGCACTACTATAGT  50
      ||||||||||| |||  ||||||||||||| |||  |||  |||||| ||
seq2  GAATTTTCTCA-GAC--TGGCTAGCTCCCA-GAAACTGCCATACTAT-GT  45

seq1  GAACCAGAAAACTTGATGCTTAAATCTCCCCGACTTCCTCATCAAGCAAT  100
      ||||   ||| ||||| |||  ||| |||||||| |||||||||||||||
seq2  GAAC--AAAACCTTGA-GCT--AATTTCCCCGAC-TCCTCATCAAGCAAT  89

seq1  CTCCAGTCTTTGGTCCCACCAACTTACTGCATCCCACCATGAAAACCAAG  150
       |||||||||  ||||||||||| ||||||||||||||| ||||  | ||
seq2  -TCCAGTCTT--GTCCCACCAAC-TACTGCATCCCACCA-GAAA--CCAG  132

seq1  TAGCTGAATCTTCCTGATTTTGGACTTTCAGCCTCAAAAACTGAGCTGAA  200
      |||||| ||||  |||||||  ||| ||||| ||| |||||||||||| |
seq2  TAGCTG-ATCT--CTGATTT--GAC-TTCAG-CTC-AAAACTGAGCTG-A  173

seq1  TAAACCTCTTCATTAAAACAAACAAAACCCAAGTATTAAACTCACTCTTT  250
      |||| ||| ||||  |||||||||||||||||||||||||||||||| ||
seq2  TAAA-CTC-TCAT--AAACAAACAAAACCCAAGTATTAAACTCACTC-TT  218

seq1  TTATTATGACAAGAAATAGACTAAAACTGTCAAAGTGACATCTCTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGACAAGAAATAGACTAAAACTGTCAAAGTGACATCTCTCTCTG  268

seq1  TACCCATCAAAGGTATTTTGAATAAGATAGAACTTCTCCCCTATCTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATCAAAGGTATTTTGAATAAGATAGAACTTCTCCCCTATCTTACT  318

seq1  GTAGGCTACTTTTCTGCTATCTCCACACTGCTGCCTGTTGTCCCCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTACTTTTCTGCTATCTCCACACTGCTGCCTGTTGTCCCCCTCTG  368

seq1  TGTTTGCACTATAGATGAAGATAGCAGAGGGCACCCCCTTATAGGAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCACTATAGATGAAGATAGCAGAGGGCACCCCCTTATAGGAGCTC  418

seq1  AATCTGAAACTTTCTCATATTCACATCCTCTTGGCTAGAACTTAGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAACTTTCTCATATTCACATCCTCTTGGCTAGAACTTAGTCATC  468

seq1  TACCTGGCTTCAGAGGAATCTGGTTACTGCCATATTCTTCTTAAAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCTTCAGAGGAATCTGGTTACTGCCATATTCTTCTTAAAGTGGG  518

seq1  AGAACAGGAAACCATACCTGCTAACTGTACGTCTCCCTTAGAGCAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGAAACCATACCTGCTAACTGTACGTCTCCCTTAGAGCAATCTT  568

seq1  TTCATGGACTCTCAAGCTCCTTTCCATTCACACCAGTGGCAGCTGAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGACTCTCAAGCTCCTTTCCATTCACACCAGTGGCAGCTGAAGAC  618

seq1  TGGCTACAGTATTTATTTACTCAAGAATATTTAAAACTGTAGCAAATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGTATTTATTTACTCAAGAATATTTAAAACTGTAGCAAATACA  668

seq1  TTATTGAATCTCCAGCAACATTGAACCCTGGACCTGAGACCACATCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAATCTCCAGCAACATTGAACCCTGGACCTGAGACCACATCAGAA  718

seq1  ATGAGTTGCCCATTAGAGTATGTATTAAGGTTTGAACAGAGACTCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGCCCATTAGAGTATGTATTAAGGTTTGAACAGAGACTCTTCAG  768

seq1  TACAATAAAAATAAATGCGTTTATTCCTTTTTTATTCAGCAATTCAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAAATAAATGCGTTTATTCCTTTTTTATTCAGCAATTCAAATC  818

seq1  TTGTGGGCTAAGGCTGGTGAAGCTGAGTCTACCATGAGAGATGGCAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCTAAGGCTGGTGAAGCTGAGTCTACCATGAGAGATGGCAGAAT  868

seq1  AGTTATTAGTGAGCACCTAGTGGTTTTCTCTGTGGGCATCACAGCTGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAGTGAGCACCTAGTGGTTTTCTCTGTGGGCATCACAGCTGGAA  918

seq1  AGACTGCTTCTGATTCATCTCATTCATCTCTGTATCTTTCATTAAAAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTTCTGATTCATCTCATTCATCTCTGTATCTTTCATTAAAAGAT  968

seq1  GAAAGGGTTCAGAAAGAGAGGGCAAAGGAATAAGGGGGAGAGTTTCTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTTCAGAAAGAGAGGGCAAAGGAATAAGGGGGAGAGTTTCTGGA  1018

seq1  ATAGTTAAGCCTGGGCTTGTATGTTCTTAGGGATGCTGGGAAGTAGGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAGCCTGGGCTTGTATGTTCTTAGGGATGCTGGGAAGTAGGAAG  1068

seq1  GAAGGCCATGACATCTCTTTATATACTTGGATCACATCCCCGCCAAAACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCATGACATCTCTTTATATACTTGGATCACATCCCCGCCAAAACT  1118

seq1  GTTCCCAGTACATACTGGCCAGATGCTTCCCTTAAAGCTCCCTTGAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGTACATACTGGCCAGATGCTTCCCTTAAAGCTCCCTTGAATTC  1168