BAC Information

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BAC

Clone NameB6Ng01-063K06
Chromosome8 (Build37)
Map Location 55,843,046 - 55,973,568
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040107, Vegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063K06.bB6Ng01-063K06.g
ACCDH883673DH883674
length1,1991,015
definitionDH883673|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K06, 5' end.DH883674|Mus musculus domesticus DNA, BAC clone: B6Ng01-063K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,843,046 - 55,844,273)(55,972,548 - 55,973,568)
sequence
gaattcaggaatgaaaacatgatctaaatgaaaggcatgtgagtggatta
aagttaatttttctggtcacttttcaaaagtgatgttccccactctctta
attaaattgaagccatagtgattttgtttgacaaaagcaataaatagaaa
atctgtcagagactgaactcaatgacagaaagtaggcccaaaacctcagt
tgtggaatattaaactcatgtgctgtaacttgaacctggcattagcttgc
tcaaagacagaaccaggccttggttttctgtgttgttactcaattcctgg
gtctgcctgtatgagtctaagatgggttgtactatgtctgtctgtctgtc
tgtctgtgtttatttttttttttttactttgatcaagacaaaaaaatcgg
ggaaaaaattgtcctgtgaaaaacaagggtttaatctaagtctccaccat
attcgtgttgaaaaattaaaacaagagatgtttacagcaccaaacacagg
atatcaggggatatttggtgagggaaaagtgatcttaagttgaaggaacg
aaatactaaaagccttgcatggagaggaagctggttaaattgtagagaca
aaacaaaatataattgattatgaaggttgaacacaaagatcaaagaagga
gatgacaaccgagagaggagaggttagaaggtaaatactaggtgaaccct
catgaagtgcttaatatgctggttaaagtgctttcattctcttgtggtat
ttaggtggaggctgtagagttaggatattttgttgcttgacttgtagttt
aaagaagttgggttcatctgtagaactgaggataaattgacagcatgaaa
gtatatctaattaagatgttccaagtgagcaatcagattccaacaagctt
tcttgctccacactattgccttgacttcactcttcctcagcagttatact
gatggtttatcctgcatcactcctgacagtcctctttcagtcgatggggt
caagagctactaaactcctttggtagtcctcatgcaattgtttcttcact
agcagccttacttggcgtgttttggagttcaataagaatgtccaccttct
ccaatcatgtagaaattcagattaaggctgcacggtatttatattcctct
gaatttgttgctatacatacttgaattactaattaattcatcctagctt
gaattcattataaaaaaatttccaacacaatttttctacacagaacaatc
tgagaaataaacacattacaaatcatcccaaaatctcctaggtactgcta
agaacagatgccacactgtgcacatatccttaatcccagtactcaggagg
caaagacaggtggatctctgaatgtgaggtctatgagggaagttccagat
cagccaggaaaacagcaaaaccctgtctcaaaaaaagcctcaaatgcaaa
aatttcctgtaatttttgggggcaactgtttaaaggatcaactgtttttg
acagcaatgaatgactttctattttagcctagactttgattgaactctta
ttaatgattagaaatggaatacagaatctagatacaagtcagagaaagta
gctacatgtagattcaagtgctgtctttatctctagtcagccatttaact
gggcaactcaaataaccttttctttttcttttttctttctttcttttttt
ctttacccacaatttgagattagacaaattttcaacaggctcaagccttc
tagaattctcaccgtgatttctctgtgtagcttgattcccatatggtgct
tagatctgaaaatagtatgaatgtgggaagaatcctaggaggagtgtggt
gacggtccatgggtatcagaggaggactcacatgcagtcgcttatattag
aattcaagaatataaacgtccttaatgcactgggctataggaataaccat
accactcatgcactggacagcctcgtgctttaaagacgttaaaaagattg
gacttaaaatgataaagaaatttaagccaaaatttgattgttgcttttaa
ctaacatctactgtacatttttgtcctcggtttctggaaagaaaatatgt
cactctatctattttgagtttttgcttctgtttgtagagaagataaaact
ttctctctggaaatatctttgagtgcatggtacacatcctttcagtcagt
ctgccctgtgggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55843046_55844273
seq2: B6Ng01-063K06.b_45_1243

seq1  GAATTCAGGAATGAAAACATGATCTAAATGAAAGGCATGTGAGTGGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATGAAAACATGATCTAAATGAAAGGCATGTGAGTGGATTA  50

seq1  AAGTTAATTTTTCTGGTCACTTTTCAAAAGTGATGTTCCCCACTCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATTTTTCTGGTCACTTTTCAAAAGTGATGTTCCCCACTCTCTTA  100

seq1  ATTAAATTGAAGCCATAGTGATTTTGTTTGACAAAAGCAATAAATAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTGAAGCCATAGTGATTTTGTTTGACAAAAGCAATAAATAGAAA  150

seq1  ATCTGTCAGAGACTGAACTCAATGACAGAAAGTAGGCCCAAAACCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCAGAGACTGAACTCAATGACAGAAAGTAGGCCCAAAACCTCAGT  200

seq1  TGTGGAATATTAAACTCATGTGCTGTAACTTGAACCTGGCATTAGCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATATTAAACTCATGTGCTGTAACTTGAACCTGGCATTAGCTTGC  250

seq1  TCAAAGACAGAACCAGGCCTTGGTTTTCTGTGTTGTTACTCAATTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAGAACCAGGCCTTGGTTTTCTGTGTTGTTACTCAATTCCTGG  300

seq1  GTCTGCCTGTATGAGTCTAAGATGGGTTGTACTATGTCTGTCTGTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTGTATGAGTCTAAGATGGGTTGTACTATGTCTGTCTGTCTGTC  350

seq1  TGTCTGTGTTTATTTTTTTTTTTTTACTTTGATCAAGACAAAAAAATCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTTTATTTTTTTTTTTTTACTTTGATCAAGACAAAAAAATCGG  400

seq1  GGAAAAAATTGTCCTGTGAAAAACAAGGGTTTAATCTAAGTCTCCACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATTGTCCTGTGAAAAACAAGGGTTTAATCTAAGTCTCCACCAT  450

seq1  ATTCGTGTTGAAAAATTAAAACAAGAGATGTTTACAGCACCAAACACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGTTGAAAAATTAAAACAAGAGATGTTTACAGCACCAAACACAGG  500

seq1  ATATCAGGGGATATTTGGTGAGGGAAAAGTGATCTTAAGTTGAAGGAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGGGATATTTGGTGAGGGAAAAGTGATCTTAAGTTGAAGGAACG  550

seq1  AAATACTAAAAGCCTTGCATGGAGAGGAAGCTGGTTAAATTGTAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAAAAGCCTTGCATGGAGAGGAAGCTGGTTAAATTGTAGAGACA  600

seq1  AAACAAAATATAATTGATTATGAAGGTTGAACACAAAGATCAAAGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATATAATTGATTATGAAGGTTGAACACAAAGATCAAAGAAGGA  650

seq1  GATGACAACCGAGAGAGGAGAGGTTAGAAGGTAAATACTAGGTGAACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAACCGAGAGAGGAGAGGTTAGAAGGTAAATACTAGGTGAACCCT  700

seq1  CATGAAGTGCTTAATATGCTGGTTAAAGTGCTTTCATTCTCTTGTGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTGCTTAATATGCTGGTTAAAGTGCTTTCATTCTCTTGTGGTAT  750

seq1  TTAGGTGGAGGCTGTAGAGTTAGGATATTTTGTTGCTTGACTTGTAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGAGGCTGTAGAGTTAGGATATTTTGTTGCTTGACTTGTAGTTT  800

seq1  AAAGAAGTTGGGTTCATCTGTAGAACTGAGGATAAATTGACAGCATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTGGGTTCATCTGTAGAACTGAGGATAAATTGACAGCATGAAA  850

seq1  GTATATCTAATTAAGATGTTCCAAGTGAGCAATCAGATTCCAACAAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTAATTAAGATGTTCCAAGTGAGCAATCAGATTCCAACAAGCTT  900

seq1  TCTTGCTCCACACTATTGCCTTGACTTCACTCTTCCTCAGCAGTTATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCCACACTATTGCCTTGACTTCACTCTTCCTCAGCAGTTATACT  950

seq1  GATGGTTTATCCTGCATCACTCCTGACAGTCCTCTTTCAGTCGATGGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTATCCTGCATCACTCCTGACAGTCCTCTTTCAGTCGATGGGGT  1000

seq1  CAAGAGCTACTAAAACTCTTTGGTAGTCTCAATGCAATTTGTTTCTTTCA  1050
      ||||||||||||||   |||||||||||   |||||| ||||||| ||||
seq2  CAAGAGCTACTAAACTCCTTTGGTAGTCCTCATGCAA-TTGTTTC-TTCA  1048

seq1  CTAGCAGCCTTACATGGCTGTTTTTGGAGTTCAATAAGGAATGTCACTCT  1100
      ||||||||||||| ||||   |||||||||||||||| |||||||   ||
seq2  CTAGCAGCCTTACTTGGCGTGTTTTGGAGTTCAATAA-GAATGTCCACCT  1097

seq1  TCT-CAATCAGTGTAGATAATTCCAGGGATTTAAGGGCTGCACCGTTATT  1149
      ||| |||||| |||||| |||||    ||||  | ||||||| || ||||
seq2  TCTCCAATCA-TGTAGA-AATTC---AGATT--AAGGCTGCA-CGGTATT  1139

seq1  TAATAATTCCTCTGAATTTGGTTTGCTATATACAAATTACATTGTAATTA  1199
      ||   |||||||||||||||  |||||||| |     ||| ||| |||||
seq2  TA--TATTCCTCTGAATTTG--TTGCTATACA-----TAC-TTG-AATTA  1178

seq1  CTAATTTACATTCAAATTCATTTTAGCTT  1228
      ||||||        |||||||  ||||||
seq2  CTAATT--------AATTCATCCTAGCTT  1199

seq1: chr8_55972548_55973568
seq2: B6Ng01-063K06.g_65_1079 (reverse)

seq1  CAGCCCACAGGGCAGACTTGACTGGAAAGGATGTGGTTACCATGGCACTC  50
      ||||||||||||||||| ||||| |||||||||||  |||||| ||||||
seq2  CAGCCCACAGGGCAGAC-TGACT-GAAAGGATGTG--TACCAT-GCACTC  45

seq1  AAAAGACAATTTCCAGAGAGAAAG-TGTATCTTCTCTACAAACAGAAGCA  99
       |||||  |||||||||||||||| | |||||||||||||||||||||||
seq2  -AAAGA-TATTTCCAGAGAGAAAGTTTTATCTTCTCTACAAACAGAAGCA  93

seq1  AAAACTCAAAATAGATAGAGTGACATATTTTCTTTCCAGAAACCGAGGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAAAATAGATAGAGTGACATATTTTCTTTCCAGAAACCGAGGAC  143

seq1  -AAAATGTACAGTAGATGTTAGTTAAAAGCAAC-ATCAAATTTTTGGCTT  197
       |||||||||||||||||||||||||||||||| |||||| ||||||| |
seq2  AAAAATGTACAGTAGATGTTAGTTAAAAGCAACAATCAAA-TTTTGGC-T  191

seq1  TAAATTTCTTTATCATTTTAAGTCCAATCTTTTTAACGTCTTTAAAGCAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTTTATCATTTTAAGTCCAATCTTTTTAACGTCTTTAAAGCAC  241

seq1  GAGGCTGTCCAGTGCATGAGTGGTATGGTTATTCCTATAGCCCAGTGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTCCAGTGCATGAGTGGTATGGTTATTCCTATAGCCCAGTGCAT  291

seq1  TAAGGACGTTTATATTCTTGAATTCTAATATAAGCGACTGCATGTGAGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACGTTTATATTCTTGAATTCTAATATAAGCGACTGCATGTGAGTC  341

seq1  CTCCTCTGATACCCATGGACCGTCACCACACTCCTCCTAGGATTCTTCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGATACCCATGGACCGTCACCACACTCCTCCTAGGATTCTTCCC  391

seq1  ACATTCATACTATTTTCAGATCTAAGCACCATATGGGAATCAAGCTACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATACTATTTTCAGATCTAAGCACCATATGGGAATCAAGCTACAC  441

seq1  AGAGAAATCACGGTGAGAATTCTAGAAGGCTTGAGCCTGTTGAAAATTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATCACGGTGAGAATTCTAGAAGGCTTGAGCCTGTTGAAAATTTG  491

seq1  TCTAATCTCAAATTGTGGGTAAAGAAAAAAAGAAAGAAAGAAAAAAGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTCAAATTGTGGGTAAAGAAAAAAAGAAAGAAAGAAAAAAGAAA  541

seq1  AAGAAAAGGTTATTTGAGTTGCCCAGTTAAATGGCTGACTAGAGATAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGTTATTTGAGTTGCCCAGTTAAATGGCTGACTAGAGATAAAG  591

seq1  ACAGCACTTGAATCTACATGTAGCTACTTTCTCTGACTTGTATCTAGATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTGAATCTACATGTAGCTACTTTCTCTGACTTGTATCTAGATT  641

seq1  CTGTATTCCATTTCTAATCATTAATAAGAGTTCAATCAAAGTCTAGGCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCCATTTCTAATCATTAATAAGAGTTCAATCAAAGTCTAGGCTA  691

seq1  AAATAGAAAGTCATTCATTGCTGTCAAAAACAGTTGATCCTTTAAACAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGTCATTCATTGCTGTCAAAAACAGTTGATCCTTTAAACAGT  741

seq1  TGCCCCCAAAAATTACAGGAAATTTTTGCATTTGAGGCTTTTTTTGAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAAAAATTACAGGAAATTTTTGCATTTGAGGCTTTTTTTGAGAC  791

seq1  AGGGTTTTGCTGTTTTCCTGGCTGATCTGGAACTTCCCTCATAGACCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTGCTGTTTTCCTGGCTGATCTGGAACTTCCCTCATAGACCTCA  841

seq1  CATTCAGAGATCCACCTGTCTTTGCCTCCTGAGTACTGGGATTAAGGATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAGATCCACCTGTCTTTGCCTCCTGAGTACTGGGATTAAGGATA  891

seq1  TGTGCACAGTGTGGCATCTGTTCTTAGCAGTACCTAGGAGATTTTGGGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAGTGTGGCATCTGTTCTTAGCAGTACCTAGGAGATTTTGGGAT  941

seq1  GATTTGTAATGTGTTTATTTCTCAGATTGTTCTGTGTAGAAAAATTGTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTAATGTGTTTATTTCTCAGATTGTTCTGTGTAGAAAAATTGTGT  991

seq1  TGGAAATTTTTTTATAATGAATTC  1021
      ||||||||||||||||||||||||
seq2  TGGAAATTTTTTTATAATGAATTC  1015