BAC Information

Click to search

BAC

Clone NameB6Ng01-063N24
Chromosome8 (Build37)
Map Location 101,040,751 - 101,118,680
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N24.bB6Ng01-063N24.g
ACCDH883836DH883837
length1,108988
definitionDH883836|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N24, 5' end.DH883837|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,040,751 - 101,041,679)(101,117,678 - 101,118,680)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgtctctag
tattgtaagagagatagtgaaagaaatcaggcattactatctattacata
gagttagaaatcacagggccagcttagcaaagtaagtttagaattcttat
tatagttatgcatggcagactacattacttattagtagaaagtcccccca
tacagtcacttagaataatagctgagctactcccatatgcaagaatttac
aatgtcctaggaagaaggaaggttatggtctatgaaggaactagagtaaa
tatttagaactatagatagctgagttatccacatacacaggaatttacaa
tggcctagggggactatacaatagacttgaattggaactatggcaagggg
gtaaagctcttacccctggttctaagattaagctgaccttaagtggggct
gcttttgatcccagttgttaacattgaattttatcccagttggttcctgt
tatctttttttatgcattcctctgttttgtgtaaaagtcacttatatgac
tggtgctcactttgagacaaattacattcagatacagcacattcccttgt
gtccatatatgtttgtcatttctcaccaactccttgcctacctctctgga
atcccaatcttctactgattgagggaggcagacttgggccagtccgcagc
aacaaaaggaaaataatactaaaaaagaaaaaaaaaaccttcaaggaagt
cctttagtaattcgtgtttactctgaggaaaccatgtattattgccctct
tttatttgctttctctattcaggaaaaacatgaaacattttattcttgat
gttcatgctatatatagggagttaaataatcacactagaaggtctcggtt
ctcttagtctcctattatccctatctttgtttttgctttgtctttacagt
gagatagctattattttatgatcatcatatcctatgtcatactatataaa
gtattgttctatataagaggtcaagagtagtcaggcttatcatcttataa
tagtgaagcatgctcattgttattagtcatagccaccttcctgaaactaa
tctactgg
gaattcttcttcccatttatgtcacactgacaaccaagatgggccatcac
aaatagaactagaaagattatctgattcaacttccataatttaattttct
tacatagaaatatgcgggacataacaataaagcataaaacctggttcaat
atctatcattttgattgctgttaacaaattgttttaggagtattaatatt
ctgagttaatgaactcagagaggctacacaaataagtaatctaccatgta
gattaaatctgaaaaggtacataaaatatactgacattcacacaggataa
aactgtgcaaggtttatttagtacagcacacctgtgtcccagaagttatg
tgcctgaaggaaataatttctttagaaaaaaagcattatacactttaagc
ataattagaatctccctgaaaaatctctaaagcctttcttggtaaaatta
ttggtcataatcctatattactttctattgaactaaaataacaaactctg
gtttttttctactttaaatatgcttctagatgctagtatttttcatacta
atcttagaaagtcagacttaactaaataatgcagccatatggctctgtca
ttattggaaaagtaccttgaaagttttctttaatggaaaaatatgtgata
agacacaaaatacaaacaagtaagtaagactagcaaacttcctaaaggca
taataaggtacttccttttatcataggttaaagtttattttcagctgctc
attttgaaaatatgagtgaaacattgtggaagacttttagaataaaaggc
tctcccaacccctgtccccactgctgatgctgtaaagagaatggggccat
ttctacaggtgatgtaaggccttcacatgaactcattgctttatgaatga
actccagtagatcagtgtgctgagatgatgtagcagaagtgagaaagatg
atagctatgtcaagtcttcagtactgacctcccatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101040751_101041679
seq2: B6Ng01-063N24.b_251_1154

seq1  GTCACTTAGAATAATAGCTGAGCTACTCCCATATGCAAGAATTTACAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTAGAATAATAGCTGAGCTACTCCCATATGCAAGAATTTACAATG  50

seq1  TCCTAGGAAGAAGGAAGGTTATGGTCTATGAAGGAACTAGAGTAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAAGAAGGAAGGTTATGGTCTATGAAGGAACTAGAGTAAATATT  100

seq1  TAGAACTATAGATAGCTGAGTTATCCACATACACAGGAATTTACAATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATAGATAGCTGAGTTATCCACATACACAGGAATTTACAATGGC  150

seq1  CTAGGGGGACTATACAATAGACTTGAATTGGAACTATGGCAAGGGGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGGACTATACAATAGACTTGAATTGGAACTATGGCAAGGGGGTAA  200

seq1  AGCTCTTACCCCTGGTTCTAAGATTAAGCTGACCTTAAGTGGGGCTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTACCCCTGGTTCTAAGATTAAGCTGACCTTAAGTGGGGCTGCTT  250

seq1  TTGATCCCAGTTGTTAACATTGAATTTTATCCCAGTTGGTTCCTGTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCAGTTGTTAACATTGAATTTTATCCCAGTTGGTTCCTGTTATC  300

seq1  TTTTTTTATGCATTCCTCTGTTTTGTGTAAAAGTCACTTATATGACTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATGCATTCCTCTGTTTTGTGTAAAAGTCACTTATATGACTGGT  350

seq1  GCTCACTTTGAGACAAATTACATTCAGATACAGCACATTCCCTTGTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTGAGACAAATTACATTCAGATACAGCACATTCCCTTGTGTCC  400

seq1  ATATATGTTTGTCATTTCTCACCAACTCCTTGCCTACCTCTCTGGAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTTGTCATTTCTCACCAACTCCTTGCCTACCTCTCTGGAATCC  450

seq1  CAATCTTCTACTGATTGAGGGAGGCAGACTTGGGCCAGTCCGCAGCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCTACTGATTGAGGGAGGCAGACTTGGGCCAGTCCGCAGCAACA  500

seq1  AAAGGAAAATAATACTAAAAAAGAAAAAAAAAACCTTCAAGGAAGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATAATACTAAAAAAGAAAAAAAAAACCTTCAAGGAAGTCCTT  550

seq1  TAGTAATTCGTGTTTACTCTGAGGAAACCATGTATTATTGCCCTCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTCGTGTTTACTCTGAGGAAACCATGTATTATTGCCCTCTTTTA  600

seq1  TTTGCTTTCTCTATTCAGGAAAAACATGAAACATTTTATTCTTGATGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCTCTATTCAGGAAAAACATGAAACATTTTATTCTTGATGTTC  650

seq1  ATGCTATATATAGGGAGTTAAATAATCACACTAAGAAGGTCTCGGTTCTC  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGCTATATATAGGGAGTTAAATAATCACACT-AGAAGGTCTCGGTTCTC  699

seq1  TTAGTCTCCTATTATCCCTATCTTTGTTTTTTGCTTTGTCTTTACAGTGA  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAGTCTCCTATTATCCCTATCTTTG-TTTTTGCTTTGTCTTTACAGTGA  748

seq1  GAATTAGCTATTTATTTTTATGAATCATTCATATCCTATGTCAATACTAT  800
      ||  ||||||||   ||||||| |||| |||||||||||||| |||||||
seq2  GA--TAGCTATT--ATTTTATG-ATCA-TCATATCCTATGTC-ATACTAT  791

seq1  ATAAAGTATTGTTCTATATACAGAGGTCAAGGAGTAGGTCAAGGCTTATA  850
      |||||||||||||||||||| ||||||||| ||||| ||| |||||||| 
seq2  ATAAAGTATTGTTCTATATA-AGAGGTCAA-GAGTA-GTC-AGGCTTAT-  836

seq1  CAAATCTTATACATAGTTGAAGGCAATGCTCATTGTTATTTAGTTCATAG  900
         |||||||| |||| |||||   ||||||||||||| |||| ||||||
seq2  --CATCTTATA-ATAG-TGAAG--CATGCTCATTGTTA-TTAG-TCATAG  878

seq1  CCACACTCTCCTGGACACTAATCTACTGG  929
      |||| || |||| || |||||||||||||
seq2  CCAC-CT-TCCT-GAAACTAATCTACTGG  904

seq1: chr8_101117678_101118680
seq2: B6Ng01-063N24.g_68_1055 (reverse)

seq1  AATATGGGAGGTCAAGTTACTGAAAGACTTTGACATTAGCTATCCATTCC  50
      ||||||||||||||   ||||| ||||| |||||| ||||||| |||   
seq2  AATATGGGAGGTCA--GTACTG-AAGAC-TTGACA-TAGCTAT-CAT---  41

seq1  TTTTCTCCACTTCTGCCTACATCATCTTCAGCACACTTGATCTTACTGGA  100
       ||||| |||||||| |||||||||| ||||||||| ||||| |||||||
seq2  CTTTCT-CACTTCTG-CTACATCATC-TCAGCACAC-TGATC-TACTGGA  86

seq1  GTTCATTCATAAAGCAATGAGTTCATGTGAAGGCCTTACATCACCTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCATAAAGCAATGAGTTCATGTGAAGGCCTTACATCACCTGTAG  136

seq1  AAATGGCCCCATTCTCTTTACAGCATTCAGCAGTGGGGACAGGGGTTGGG  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATGGCCCCATTCTCTTTACAGCA-TCAGCAGTGGGGACAGGGGTTGGG  185

seq1  AGAGCCTTTTATTCTAAAAGTCTTCCACAATGTTTCACTCATATTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTTTATTCTAAAAGTCTTCCACAATGTTTCACTCATATTTTCAA  235

seq1  AATGAGCAGCTGAAAATAAACTTTAACCTATGATAAAAGGAAGTACCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGCTGAAAATAAACTTTAACCTATGATAAAAGGAAGTACCTTA  285

seq1  TTATGCCTTTAGGAAGTTTGCTAGTCTTACTTACTTGTTTGTATTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTTTAGGAAGTTTGCTAGTCTTACTTACTTGTTTGTATTTTGTG  335

seq1  TCTTATCACATATTTTTCCATTAAAGAAAACTTTCAAGGTACTTTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCACATATTTTTCCATTAAAGAAAACTTTCAAGGTACTTTTCCAA  385

seq1  TAATGACAGAGCCATATGGCTGCATTATTTAGTTAAGTCTGACTTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAGAGCCATATGGCTGCATTATTTAGTTAAGTCTGACTTTCTAA  435

seq1  GATTAGTATGAAAAATACTAGCATCTAGAAGCATATTTAAAGTAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTATGAAAAATACTAGCATCTAGAAGCATATTTAAAGTAGAAAAA  485

seq1  AACCAGAGTTTGTTATTTTAGTTCAATAGAAAGTAATATAGGATTATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGTTTGTTATTTTAGTTCAATAGAAAGTAATATAGGATTATGAC  535

seq1  CAATAATTTTACCAAGAAAGGCTTTAGAGATTTTTCAGGGAGATTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTTTACCAAGAAAGGCTTTAGAGATTTTTCAGGGAGATTCTAAT  585

seq1  TATGCTTAAAGTGTATAATGCTTTTTTTCTAAAGAAATTATTTCCTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAAAGTGTATAATGCTTTTTTTCTAAAGAAATTATTTCCTTCAG  635

seq1  GCACATAACTTCTGGGACACAGGTGTGCTGTACTAAATAAACCTTGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAACTTCTGGGACACAGGTGTGCTGTACTAAATAAACCTTGCACA  685

seq1  GTTTTATCCTGTGTGAATGTCAGTATATTTTATGTACCTTTTCAGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCCTGTGTGAATGTCAGTATATTTTATGTACCTTTTCAGATTTA  735

seq1  ATCTACATGGTAGATTACTTATTTGTGTAGCCTCTCTGAGTTCATTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATGGTAGATTACTTATTTGTGTAGCCTCTCTGAGTTCATTAACT  785

seq1  CAGAATATTAATACTCCTAAAACAATTTGTTAACAGCAATCAAAATGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATTAATACTCCTAAAACAATTTGTTAACAGCAATCAAAATGATA  835

seq1  GATATTGAACCAGGTTTTATGCTTTATTGTTATGTCCCGCATATTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGAACCAGGTTTTATGCTTTATTGTTATGTCCCGCATATTTCTAT  885

seq1  GTAAGAAAATTAAATTATGGAAGTTGAATCAGATAATCTTTCTAGTTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAATTAAATTATGGAAGTTGAATCAGATAATCTTTCTAGTTCTA  935

seq1  TTTGTGATGGCCCATCTTGGTTGTCAGTGTGACATAAATGGGAAGAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGGCCCATCTTGGTTGTCAGTGTGACATAAATGGGAAGAAGAA  985

seq1  TTC  1003
      |||
seq2  TTC  988