BAC Information

Click to search

BAC

Clone NameB6Ng01-065E16
Chromosome8 (Build37)
Map Location 33,778,231 - 33,779,240
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065E16.bB6Ng01-065E16.g
ACCDH884806DH884807
length1,0911,068
definitionDH884806|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E16, 5' end.DH884807|Mus musculus domesticus DNA, BAC clone: B6Ng01-065E16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aagaccgggtcgattatactactcactaatatggagaggaccgcggaatt
gtttgttcaggtctgagcgccattttttaatggggttatttgattttctg
gagtccaccttcttgagttctttatatatattggatattagtcccctatc
tgatttaggataggtaaagatcctttcccaattttttggtggcctttttg
tcttattgatggtgtcttttgctttgcagaagctttgcagtttcatgagg
tcccatttgtcaattcttgatcttacagcacaagccattgctgttctatt
caggaattttccccctgtgcccatatcttcaagggttttccctactttct
cctcaataagttttagtgtctctggttttatgtggagttccttaatccag
ttagatttgaccttagttcaaggagatagaaatggatcaattcacattct
tctacatgataactgccagttgtgccagcaccatttgttgaagatgctat
cttttttccactggatggtttttgctcccttgtcaaagatcaagtgacca
taggtgtgtgggttcatttctgggtcttcgattctattccattagtctac
tttgtctgttgctataccagtaccatgcagtttttatcacaattgctctg
tagtacagctttaggtcaggcatggtgattccaccagaggttcttttatc
cttgagaagagttttttgctatcctaggttttttgttattccagatgaat
ttgccgattgccctttctaattcgttgaagaattgaattggaattttgat
ggggattatattgaacctgtagattgcttgtggcaagatagccattttta
cattgtgattctgccaatccatgagcatgggaagatctttccatcttctg
agatctctataattctttcttcaagaacttgaggtcttatcattacagat
cttcacttccttaagtagaagccatgccaaagtattttatattattgtga
ccatgaaagtgtgtgtttccctaatccttctagcctgttaatcctttgat
aagagaaggccatgactttgttgattaatttatgtccacgt
gaattcagtaggaattcagtgagaaggttatcaattcaataacattcaaa
tttacttctagtagagatggtgaagctaattaggcattacaaagaacgga
atagctcagggctggtctgcagagtgtttacttgggacaatagccagcct
tacccagacaagggaattcacaatggcctagtgaataggtgggtttacca
tgaaagagttagggaatccccctgagacaggtttcttaactaggcccaaa
gaaacagcataatcaggcatttactagaacccctggtggtgggcttaaca
atagactagcattatacctggctcccttcttagtggcaggtccccacctt
cttttgatgtatacattccttttgtattgtgtcactgtaattcagtggat
gtatctaacctggtttcttgtcactcttctgcataaaaagtatgatgctc
gccttgaaaaattacattcaggttctactcaatctcttgtgccacatctg
tttgtcattcattcgccgactccttgtccacctgcaactagagacctgtt
ctacgcagacagggaccaaaaagggtctgcagcaaatgagtccatgaaac
tctccttgcttcctaagacccttccatttctactcctagtctcagcatac
agaaaaattgatgatctccttattatatcagaacagaaaagaatgggcta
accttactgggaactcttcaagtaacaatgtgtaagttaacatggcttca
gatatcctcacaaaaaaaaaaaaaaaaaaaaaaaatgaagagaggaaaga
aagaaaaaaaagaactatttcttttttaaaagcgggtgctgtcttagctt
gtttggtgtcacttttaaagagagcatgaactagaatctttagaaagaga
tgtgtttctcagcactggaggctggagcggtctatatcaagacatgggct
cttctttctcctcataatggaaaacccaatagtgacacagcaatgctgga
atgcagcctggcatgcaatttatcctccagaaggggatcagctctttagg
cctaatctctcaggaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_33778231_33779240
seq2: B6Ng01-065E16.g_154_1136

seq1  ATTACAAAGAACGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGAACGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGG  50

seq1  GACAATAGCCAGCCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGCCAGCCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAA  100

seq1  TAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTC  150

seq1  TTAACTAGGCCCAAAGAAACAGCATAATCAGGCATTTACTAGAACCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGGCCCAAAGAAACAGCATAATCAGGCATTTACTAGAACCCCTG  200

seq1  GTGGTGGGCTTAACAATAGACTAGCATTATACCTGGCTCCCTTCTTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGCTTAACAATAGACTAGCATTATACCTGGCTCCCTTCTTAGTG  250

seq1  GCAGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCAC  300

seq1  TGTAATTCAGTGGATGTATCTAACCTGGTTTCTTGTCACTCTTCTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCAGTGGATGTATCTAACCTGGTTTCTTGTCACTCTTCTGCATA  350

seq1  AAAAGTATGATGCTCGCCTTGAAAAATTACATTCAGGTTCTACTCAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGATGCTCGCCTTGAAAAATTACATTCAGGTTCTACTCAATCT  400

seq1  CTTGTGCCACATCTGTTTGTCATTCATTCGCCGACTCCTTGTCCACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCCACATCTGTTTGTCATTCATTCGCCGACTCCTTGTCCACCTGC  450

seq1  AACTAGAGACCTGTTCTACGCAGACAGGGACCAAAAAGGGTCTGCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGACCTGTTCTACGCAGACAGGGACCAAAAAGGGTCTGCAGCAA  500

seq1  ATGAGTCCATGAAACTCTCCTTGCTTCCTAAGACCCTTCCATTTCTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCATGAAACTCTCCTTGCTTCCTAAGACCCTTCCATTTCTACTC  550

seq1  CTAGTCTCAGCATACAGAAAAATTGATGATCTCCTTATTATATCAAGAAC  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAGTCTCAGCATACAGAAAAATTGATGATCTCCTTATTATATC-AGAAC  599

seq1  AGAAAAGAAT-GGCTAACCTTACTGGGAACTCTTCAAGTAACAATGTGTA  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATGGGCTAACCTTACTGGGAACTCTTCAAGTAACAATGTGTA  649

seq1  AGTTAACATGGCTTCAGATATCCTCACAAAAAAAAAAAAAAAAAAAAAAA  699
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AGTTAACATGGCTTCAGATATCCTCAC--AAAAAAAAAAAAAAAAAAAAA  697

seq1  AAAAGAAGAAGAAGAAAAGAAAAGAAAAAAAAAGAACTATTTCTTTTTTA  749
      ||| |||||   || |||||||   |||||||||||||||||||||||| 
seq2  AAATGAAGA--GAGGAAAGAAA--GAAAAAAAAGAACTATTTCTTTTTT-  742

seq1  AAAAGCGGGTGCTGTCTTAGCTTGTTTTGTGTCACTTTTAAAGTAGAGCA  799
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AAAAGCGGGTGCTGTCTTAGCTTGTTTGGTGTCACTTTTAAAG-AGAGCA  791

seq1  TGAACTAGAATCTTTAGAAAGAGATGTGTTTCTCAGCACTGGAGGCTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGAATCTTTAGAAAGAGATGTGTTTCTCAGCACTGGAGGCTGGA  841

seq1  GCGGTTCTATATCAAGACATGGGCATCTTCTTTTCTCCTCATTATATGGA  899
      |||| ||||||||||||||||||| ||||| |||||||||||   |||||
seq2  GCGG-TCTATATCAAGACATGGGC-TCTTC-TTTCTCCTCAT--AATGGA  886

seq1  AAAACCCAAATAGTGACACAGCAGATGCCTGGAAATGCAGCCCATGCAAT  949
      |||  || ||||||||||||||| ||| |||| |||||||||  ||  ||
seq2  AAA--CCCAATAGTGACACAGCA-ATG-CTGG-AATGCAGCC--TGGCAT  929

seq1  GGAAATTAATCCATCCAAGAAGGTGGATTCAGCTCTTATGGCCTAAATCT  999
       | |||| |||| ||| |||||| ||| |||||||||  ||||| |||||
seq2  -GCAATTTATCC-TCC-AGAAGG-GGA-TCAGCTCTTTAGGCCT-AATCT  973

seq1  CTCATGGACCC  1010
      |||| ||||||
seq2  CTCA-GGACCC  983