BAC Information

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BAC

Clone NameB6Ng01-065H01
Chromosome8 (Build37)
Map Location 89,248,200 - 89,248,904
singlet/doubletsinglet
Overlap geneSiah1a
Upstream geneItfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12, Lonp2
Downstream geneENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065H01.bB6Ng01-065H01.g
ACCDH884914DH884915
length957675
definitionDH884914|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H01, 5' end.DH884915|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaaagaaggtacacacacaaatacatacacacacacacacaca
cacacacacacacacacacaccatgtgaattaggtgaatgaggtcacaaa
taatctcctgaatacagagaatacaaacaactgaataaaagaacaaaatg
agggagttaattcaggatatgaaaatagaattcaacaagaagacagaaat
cctgagaaaaaaagaactgatccaacactggaaagtacatcaaacaaaac
ctttcaggagaaagccttccaatggaattcaccatgtagacgagaggata
ccaggatttacatataaggcaggaattggatcattcaggcaaagtcaatg
ataaacttttgaaaaaagtatgaaaggagaatgagaaacgtgacactgta
aaagacgaatttgtaaattatgggcatagaagaagaattctatgcctgtg
gcagaaccttcccctaatgaataaagatttcaagggaccaagaaagaagt
gggaaagaaagaggcggggcttccgggttggagagaggaggaggggaggc
aagagaaagaaacttccttttggatagcagagagcatggaggtactatgt
aggtagagagaggctgttggtttaatggcagaccctggcagatctgacac
cggaggatttaacatagaatagcttacaaaattaggattctggcagtagc
gtgggtgccctttttatatatttcatgcaacaggtggtgcttaatgtgtt
aagcaagaatccactagaaatttaagattcttagcccatgagttagaaat
ttagttagaaattggaggtttgacaaacagagtaaagtcaagtggggaaa
cttatacaagaaaaagggctctgaggtcccttgctgtaaataaaaaaaaa
tgacagatggctgccctgtgctaagccaatagtaaagctgctactttcct
agcagct
gaattcctattttcacaaaagggctaaattaaaaatatttctaataaatt
gattgaaggaaaagaaagtatgtactgaacacaaacttttgacattaagc
aattatgaatatcaaaaagacactaacttaaaaggtacaaaagtgagaaa
aacctgaattacagaaaagaaagtcaaatttatttaatgaaaaactagaa
taaaaattagcaaatacacacatcaaaaaacaaaaacaaaacagaaaaac
aaaaacaaacccacagcagcactatgtgttgactcacaaggggaaaacag
tggtctatgaccacgcagatggcttgtcagttaaaagaaaaccaaccaca
cacgtgcacgcatgcgtgcacagacacacacccccaaaaaattgtcaaca
atacaatcaatctacaacaaacaaaagttcagaaatattttacaatgttt
ctttcttaatcaaaaagatgcccatcttgggaaatatatttttcagtggt
ttactgttgaatattttaaatatattatggtacacctgcactgtttcctg
tttaacagctttcttttatttacctcaggcaagttcaactaccagaaagt
tttggtggcaagagaagggggcgttatctcgtgaatcaaatgcaaattta
acactggccgaatattgattccgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89248200_89248904
seq2: B6Ng01-065H01.g_67_741

seq1  GAATTCCTATTTTCACAAAAGGGCTAAATTAAAAATATTTCTAATAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTTCACAAAAGGGCTAAATTAAAAATATTTCTAATAAATT  50

seq1  GATTGAAGGAAAAGAAAGTATGTACTGAACACAAACTTTTGACATTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGGAAAAGAAAGTATGTACTGAACACAAACTTTTGACATTAAGC  100

seq1  AATTATGAATATCAAAAAGACACTAACTTAAAAGGTACAAAAGTGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAATATCAAAAAGACACTAACTTAAAAGGTACAAAAGTGAGAAA  150

seq1  AACCTGAATTACAGAAAAGAAAGTCAAATTTATTTAATGAAAAACTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAATTACAGAAAAGAAAGTCAAATTTATTTAATGAAAAACTAGAA  200

seq1  TAAAAATTAGCAAATACACACATCAAAAAACAAAAACAAAACAGAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAGCAAATACACACATCAAAAAACAAAAACAAAACAGAAAAAC  250

seq1  AAAAACAAACCCACAGCAGCACTATGTGTTGACTCACAAGGGGAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACCCACAGCAGCACTATGTGTTGACTCACAAGGGGAAAACAG  300

seq1  TGGTCTATGACCACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATGACCACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACA  350

seq1  CACGTGCACGCATGCGTGCACAGACACACACCCCCAAAAAATTGTCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCACGCATGCGTGCACAGACACACACCCCCAAAAAATTGTCAACA  400

seq1  ATACAATCAATCTACAACAAACACAAAGTTCAGAAATATTTTACAATGTT  450
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATACAATCAATCTACAACAAACA-AAAGTTCAGAAATATTTTACAATGTT  449

seq1  TCCTTTCTTAATACAAAAGATGCCCATCTTGGGTATATATATTTTTTTCA  500
      | ||||||||||  |||||||||||||||||||   | |||| |||||||
seq2  T-CTTTCTTAATCAAAAAGATGCCCATCTTGGG---AAATATATTTTTCA  495

seq1  GTGGTTTACTGTTGAATTATTTTTAAATATATTAGTGTTACTACATGCAA  550
      |||||||||||||||||   |||||||||||||| || ||| || ||| |
seq2  GTGGTTTACTGTTGAAT--ATTTTAAATATATTA-TGGTAC-ACCTGC-A  540

seq1  CTGTTTCCTGTATTAACAGCTTTTCTTTTTATTTACCTTCATGTCTAGCT  600
      ||||||||||| |||||||||||   ||||||||||| ||| | | || |
seq2  CTGTTTCCTGT-TTAACAGCTTT--CTTTTATTTACC-TCA-GGCAAG-T  584

seq1  TCTACCTACCAGGAAAGTTTTAGGTTGGCAAGCAGATGGGTGCCTTATTC  650
      || | |||||| |||||||||  | ||||||| ||| ||| || ||| ||
seq2  TC-AACTACCA-GAAAGTTTT--GGTGGCAAG-AGAAGGGGGCGTTA-TC  628

seq1  TCTGTGAAGTCAAATGCAAATTTTAAACACTGGCCAGAAATATTTGATTG  700
      || ||||| ||||||||||||||  ||||||||||   |||| |||||| 
seq2  TC-GTGAA-TCAAATGCAAATTT--AACACTGGCC--GAATA-TTGATT-  670

seq1  CCGTT  705
      |||||
seq2  CCGTT  675