BAC Information

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BAC

Clone NameB6Ng01-066E12
Chromosome8 (Build37)
Map Location 114,034,706 - 114,212,924
singlet/doubletdoublet
Overlap geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
Downstream geneBcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066E12.bB6Ng01-066E12.g
ACCDH885499DH885500
length966731
definitionDH885499|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E12, 5' end.DH885500|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,034,706 - 114,035,674)(114,212,194 - 114,212,924)
sequence
gaattcctgccagccctccaaactcacgtctgtctctttctccttcctcc
tctctcccttaccccgccccccaccttcctcccactctcacctcaggacc
tttataccaatggctggttctgcctggaagactcttctatcctttatctg
gctaattctttgtctttttgtgtgtctgtatctttgtgtgtgtgtgtggt
gtgtggtaagtacactacacatgcatgtccctgtgtgtcaaggacagagg
ccaacatggagtgccttcctccattgcttgcttgtttgcttgactgactg
actgatttacagactttctcatggaaccctggaacttaccaatatgggta
ggctggctagccagcaagctccaaagatggtcccatctctacctactcag
tatttggatcactggggtttacaaccatgcccagcattttatgcgggtca
cagggacccaaaatcagttcatgaagtttgcacagcaattacacagatct
ccttcttctttccccccccccaccccgccctttgggattcagtacagaca
cttctaaggttttgctggaccgtcctctcacaccccaggatgaattagct
acatctgtgtatctgcaggacctagcattctgtttcttggcacttgagat
attataatggtatttaattatagtacattttctccattagattgcaattt
tcttgagggtaaaaatcaatttgctagtataatgcctaccacatgctatt
tgttaacatattaatttagtgactatttggtataaaggtaacttaaaaat
ggtcttaaatgcttatgctacacaacaacatatacatcagtgttcacagc
aacatcactcataaaacccttaatagtggaaacattgtcaacaactgatg
aatggataaataagaagctgtatagcaattatggactatgactcactata
agaataaagagcactg
gaattctcttttttatttttgttattttggtttttggtttttggttttcc
aagacagggtttctctgtacagccttggctatcctggaactcactctgta
gactaggttagccttgaactcagaaatctgcccgcctctgcctcccgagt
gcaggattaaaggcgtgcgccaccacgggctcttctcgatctcttctgat
ggggccaaaagggaagaagcttgtcccctggaacccagcagagcccaggt
gtcccctccccgcgcccccaacgcttagttgagcttcttgtccccacagg
tttttaagaaccccaagttcaactccttcaccgtgcgtaatgacatcacc
ctgctgaagctggccactcctgcccagttctctgagactgtgtctgccgt
gtgtctgcccactgttgacgatgacttccctgctgggacactgtgtgcca
ccactggctggggcaagaccaaatacaatggtgagtgtggccttgcccag
cggaagctgttcttgggtcatgctgcccaggccgcaggctcttccagttg
tgactcccgctgtctgtctgtctgtctgtcttccttcttttttaaaaaaa
caattgaaattaatttattttattttgtttatatgaacaaaccgttgctg
tcttcagacacaccagaagagggcgtcagatcccattacagatggttgtg
aaccaccatgtggttgctgggaattgaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114034706_114035674
seq2: B6Ng01-066E12.b_43_1008

seq1  GAATTCCTGCCAGCCCTCCAAACTCACGTCTGTCTCTTTCTCCTTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCAGCCCTCCAAACTCACGTCTGTCTCTTTCTCCTTCCTCC  50

seq1  TCTCTCCCTTACCCCGCCCCCCACCTTCCTCCCACTCTCACCTCAGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTTACCCCGCCCCCCACCTTCCTCCCACTCTCACCTCAGGACC  100

seq1  TTTATACCAATGGCTGGTTCTGCCTGGAAGACTCTTCTATCCTTTATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCAATGGCTGGTTCTGCCTGGAAGACTCTTCTATCCTTTATCTG  150

seq1  GCTAATTCTTTGTCTTTTTGTGTGTCTGTATCTTTGTGTGTGTGTGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTCTTTGTCTTTTTGTGTGTCTGTATCTTTGTGTGTGTGTGTGGT  200

seq1  GTGTGGTAAGTACACTACACATGCATGTCCCTGTGTGTCAAGGACAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAAGTACACTACACATGCATGTCCCTGTGTGTCAAGGACAGAGG  250

seq1  CCAACATGGAGTGCCTTCCTCCATTGCTTGCTTGTTTGCTTGACTGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGGAGTGCCTTCCTCCATTGCTTGCTTGTTTGCTTGACTGACTG  300

seq1  ACTGATTTACAGACTTTCTCATGGAACCCTGGAACTTACCAATATGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTACAGACTTTCTCATGGAACCCTGGAACTTACCAATATGGGTA  350

seq1  GGCTGGCTAGCCAGCAAGCTCCAAAGATGGTCCCATCTCTACCTACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTAGCCAGCAAGCTCCAAAGATGGTCCCATCTCTACCTACTCAG  400

seq1  TATTTGGATCACTGGGGTTTACAACCATGCCCAGCATTTTATGCGGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGATCACTGGGGTTTACAACCATGCCCAGCATTTTATGCGGGTCA  450

seq1  CAGGGACCCAAAATCAGTTCATGAAGTTTGCACAGCAATTACACAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCCAAAATCAGTTCATGAAGTTTGCACAGCAATTACACAGATCT  500

seq1  CCTTCTTCTTTCCCCCCCCCCACCCCGCCCTTTGGGATTCAGTACAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTTTCCCCCCCCCCACCCCGCCCTTTGGGATTCAGTACAGACA  550

seq1  CTTCTAAGGTTTTGCTGGACCGTCCTCTCACACCCCAGGATGAATTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGGTTTTGCTGGACCGTCCTCTCACACCCCAGGATGAATTAGCT  600

seq1  ACATCTGTGTATCTGCAGGACCTAGCATTCTGTTTCTTGGCACTTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGTATCTGCAGGACCTAGCATTCTGTTTCTTGGCACTTGAGAT  650

seq1  ATTATAATGGTATTTAATTATAGTACATTTTCTCCATTAGATTGCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGGTATTTAATTATAGTACATTTTCTCCATTAGATTGCAATTT  700

seq1  TCTTGAGGGTAAAAATCAATTTGCTAGTATAATGCCTACCACATGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGGTAAAAATCAATTTGCTAGTATAATGCCTACCACATGCTATT  750

seq1  TGTTAACATATTAATTTAGTGACTATTTGGTATTAAAGGCAACTTAAAAA  800
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TGTTAACATATTAATTTAGTGACTATTTGGTA-TAAAGGTAACTTAAAAA  799

seq1  TGGTCTTAAATGCTTATGCTACACAACAACATATACATCAGTGTTCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAAATGCTTATGCTACACAACAACATATACATCAGTGTTCACAG  849

seq1  CAACATCACTCATAAAACCC-TAAAAGTGGAAACAATGTCCAACAACTGA  899
      |||||||||||||||||||| ||| |||||||||| ||| ||||||||||
seq2  CAACATCACTCATAAAACCCTTAATAGTGGAAACATTGT-CAACAACTGA  898

seq1  TGAATGGATAAATAAGAAGCTGTATAGCAATAATGGACTATGACTCACTT  949
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  TGAATGGATAAATAAGAAGCTGTATAGCAATTATGGACTATGACTCAC-T  947

seq1  ATAAAGAGAAATGAGCACTG  969
      || ||||  || ||||||||
seq2  AT-AAGAATAAAGAGCACTG  966

seq1: chr8_114212194_114212924
seq2: B6Ng01-066E12.g_71_801 (reverse)

seq1  GAGTTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAATGGG  50

seq1  ATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCAACGGTTTGTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCAACGGTTTGTTCATA  100

seq1  TAAACAAAATAAAATAAATTAATTTCAATTGTTTTTTTAAAAAAGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAATAAAATAAATTAATTTCAATTGTTTTTTTAAAAAAGAAGGA  150

seq1  AGACAGACAGACAGACAGACAGCGGGAGTCACAACTGGAAGAGCCTGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGACAGACAGCGGGAGTCACAACTGGAAGAGCCTGCGG  200

seq1  CCTGGGCAGCATGACCCAAGAACAGCTTCCGCTGGGCAAGGCCACACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCAGCATGACCCAAGAACAGCTTCCGCTGGGCAAGGCCACACTCA  250

seq1  CCATTGTATTTGGTCTTGCCCCAGCCAGTGGTGGCACACAGTGTCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATTTGGTCTTGCCCCAGCCAGTGGTGGCACACAGTGTCCCAGC  300

seq1  AGGGAAGTCATCGTCAACAGTGGGCAGACACACGGCAGACACAGTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTCATCGTCAACAGTGGGCAGACACACGGCAGACACAGTCTCAG  350

seq1  AGAACTGGGCAGGAGTGGCCAGCTTCAGCAGGGTGATGTCATTACGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGGCAGGAGTGGCCAGCTTCAGCAGGGTGATGTCATTACGCACG  400

seq1  GTGAAGGAGTTGAACTTGGGGTTCTTAAAAACCTGTGGGGACAAGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAGTTGAACTTGGGGTTCTTAAAAACCTGTGGGGACAAGAAGCT  450

seq1  CAACTAAGCGTTGGGGGCGCGGGGAGGGGACACCTGGGCTCTGCTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGCGTTGGGGGCGCGGGGAGGGGACACCTGGGCTCTGCTGGGTT  500

seq1  CCAGGGGACAAGCTTCTTCCCTTTTGGCCCCATCAGAAGAGATCGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGACAAGCTTCTTCCCTTTTGGCCCCATCAGAAGAGATCGAGAAG  550

seq1  AGCCCGTGGTGGCGCACGCCTTTAATCCTGCACTCGGGAGGCAGAGGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGTGGTGGCGCACGCCTTTAATCCTGCACTCGGGAGGCAGAGGCGG  600

seq1  GCAGATTTCTGAGTTCAAGGCTAACCTAGTCTACAGAGTGAGTTCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCTGAGTTCAAGGCTAACCTAGTCTACAGAGTGAGTTCCAGGA  650

seq1  TAGCCAAGGCTGTACAGAGAAACCCTGTCTTGGAAAACCAAAAACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAGGCTGTACAGAGAAACCCTGTCTTGGAAAACCAAAAACCAAAA  700

seq1  ACCAAAATAACAAAAATAAGAAAGAGAATTC  731
      ||||||||||||||||||| |||||||||||
seq2  ACCAAAATAACAAAAATAAAAAAGAGAATTC  731