BAC Information

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BAC

Clone NameB6Ng01-066E20
Chromosome8 (Build37)
Map Location 74,954,046 - 75,114,804
singlet/doubletdoublet
Overlap geneCalr3, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a
Upstream geneAbhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, LOC100042421
Downstream geneNwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066E20.bB6Ng01-066E20.g
ACCDH885515DH885516
length600591
definitionDH885515|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E20, 5' end.DH885516|Mus musculus domesticus DNA, BAC clone: B6Ng01-066E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,954,046 - 74,954,644)(75,114,214 - 75,114,804)
sequence
gaattccttcatggcctttatatcagagctcctgcctccaggttcctgcc
ctgtgtgagttcctgtcctgaccaccttcagtgatgaacagtgatatgga
agtctaagccaaataaaccgtttcctccctaagttgctttgctcatagac
tttcatcacagcaatagtaactaagacaccaggctgtaggattaccattc
cattaagtggcaagtgcatacttcttggcttttgtttgtctttggatttt
ttttttttttttttttggtatgaccatggtagacctctcgaataatctta
gggtagaagcacgaaatgaagagagagaagctgtatcaagagacaagtga
ctaaacctcaaaattatggagagatagaaagttacaggccagagccaaat
tatcttgattttagtcactgtgatctaaccctgcatctgacctaacatct
ttgtaactatcaaaaccctgcagtggaggatgggggcggggtggggggtg
accaggaatttttgcaacagtcaggcagttaaatgaattcattaaattaa
aattaaaatttaaaaacattgctgggccgggcgtggtggtgctcaccttt

gaattcaaagctagtctgagctacttagcaagatcatgcatccaaactaa
aagcaagaagagggttcgggatgcaggtgcaggatgcaggtgcgggatgc
aggtgcgggatgcaggtgtgggatgcaggtgtgggacgcacctgcttaaa
atgtgtgagtccctaggttctagtcccagaaattcaagaaaaggagggga
aaaagaggggcttgaggggtgtcttggtgattaagaacacactggctgct
cttgcaaagaacctgggtttgattccaagaacctgtatggcagttctcac
ctgtctataattccaattccagggcatcagatgccttttcctggcacaca
gatacaaatgcaggtaaaagcacccatataatttttaaattttattttaa
gaaagaaaaacaatctttttttttaaaagatatctggatttatttttatt
gtctgtgtattttgcctgcatatgcctgtgcttcatatgtatgcaatacc
tgaagaggccagaagacggcaccagatcccacagatctggagttacaaat
ggtgttctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74954046_74954644
seq2: B6Ng01-066E20.b_48_647

seq1  GAATTCCTTCATGGCCTTTATATCAGAGCTCCTGCCTCCAGGTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATGGCCTTTATATCAGAGCTCCTGCCTCCAGGTTCCTGCC  50

seq1  CTGTGTGAGTTCCTGTCCTGACCACCTTCAGTGATGAACAGTGATATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGTTCCTGTCCTGACCACCTTCAGTGATGAACAGTGATATGGA  100

seq1  AGTCTAAGCCAAATAAACCGTTTCCTCCCTAAGTTGCTTTGCTCATAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGCCAAATAAACCGTTTCCTCCCTAAGTTGCTTTGCTCATAGAC  150

seq1  TTTCATCACAGCAATAGTAACTAAGACACCAGGCTGTAGGATTACCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCACAGCAATAGTAACTAAGACACCAGGCTGTAGGATTACCATTC  200

seq1  CATTAAGTGGCAAGTGCATACTTCTTGGCTTTTGTTTGTCTTTGGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTGGCAAGTGCATACTTCTTGGCTTTTGTTTGTCTTTGGATTTT  250

seq1  TTTTTTTTTTTTTTTTGGTATGACCATGGTAGACCTCTCGAATAATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGGTATGACCATGGTAGACCTCTCGAATAATCTTA  300

seq1  GGGTAGAAGCACGAAATGAAGAGAGAGAAGCTGTATCAAGAGACAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAAGCACGAAATGAAGAGAGAGAAGCTGTATCAAGAGACAAGTGA  350

seq1  CTAAACCTCAAAATTATGGAGAGATAGAAAGTTACAGGCCAGAGCCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTCAAAATTATGGAGAGATAGAAAGTTACAGGCCAGAGCCAAAT  400

seq1  TATCTTGATTTTAGTCACTGTGATCTAACCCTGCATCTGACCTAACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATTTTAGTCACTGTGATCTAACCCTGCATCTGACCTAACATCT  450

seq1  TTGTAACTATCAAAACCCTGCAGTGGAGGATGGGGGCGGGGTGGGGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTATCAAAACCCTGCAGTGGAGGATGGGGGCGGGGTGGGGGGTG  500

seq1  ACCAGGAGTTGGAGCAGCAGTCAGGCAGTTAAATGAATACATTAAATT-A  549
      ||||||| ||   ||| ||||||||||||||||||||| ||||||||| |
seq2  ACCAGGAATTTTTGCAACAGTCAGGCAGTTAAATGAATTCATTAAATTAA  550

seq1  AATTAAAATTAAAAAACATAGCTGGGCCGGGCGTGGTGGTGCACACCTTT  599
      |||||||||| |||||||| |||||||||||||||||||||| |||||||
seq2  AATTAAAATTTAAAAACATTGCTGGGCCGGGCGTGGTGGTGCTCACCTTT  600

seq1: chr8_75114214_75114804
seq2: B6Ng01-066E20.g_69_659 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACCATTTGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACCATTTGTAAC  50

seq1  TCCAGATCTGTGGGATCTGGTGCCGTCTTCTGGCCTCTTCAGGTATTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCTGTGGGATCTGGTGCCGTCTTCTGGCCTCTTCAGGTATTGCA  100

seq1  TACATATGAAGCACAGGCATATGCAGGCAAAATACACAGACAATAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGAAGCACAGGCATATGCAGGCAAAATACACAGACAATAAAAAT  150

seq1  AAATCCAGATATCTTTTAAAAAAAAAGATTGTTTTTCTTTCTTAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGATATCTTTTAAAAAAAAAGATTGTTTTTCTTTCTTAAAATAA  200

seq1  AATTTAAAAATTATATGGGTGCTTTTACCTGCATTTGTATCTGTGTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAATTATATGGGTGCTTTTACCTGCATTTGTATCTGTGTGCCA  250

seq1  GGAAAAGGCATCTGATGCCCTGGAATTGGAATTATAGACAGGTGAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCATCTGATGCCCTGGAATTGGAATTATAGACAGGTGAGAACT  300

seq1  GCCATACAGGTTCTTGGAATCAAACCCAGGTTCTTTGCAAGAGCAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACAGGTTCTTGGAATCAAACCCAGGTTCTTTGCAAGAGCAGCCAG  350

seq1  TGTGTTCTTAATCACCAAGACACCCCTCAAGCCCCTCTTTTTCCCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAATCACCAAGACACCCCTCAAGCCCCTCTTTTTCCCCTCCT  400

seq1  TTTCTTGAATTTCTGGGACTAGAACCTAGGGACTCACACATTTTAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAATTTCTGGGACTAGAACCTAGGGACTCACACATTTTAAGCAG  450

seq1  GTGCGTCCCACACCTGCATCCCACACCTGCATCCCGCACCTGCATCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTCCCACACCTGCATCCCACACCTGCATCCCGCACCTGCATCCCGC  500

seq1  ACCTGCATCCTGCACCTGCATCCCGAACCCTCTTCTTGCTTTTAGTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATCCTGCACCTGCATCCCGAACCCTCTTCTTGCTTTTAGTTTGG  550

seq1  ATGCATGATCTTGCTAAGTAGCTCAGACTAGCTTTGAATTC  591
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGATCTTGCTAAGTAGCTCAGACTAGCTTTGAATTC  591