BAC Information

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BAC

Clone NameB6Ng01-066I17
Chromosome8 (Build37)
Map Location 83,176,108 - 83,380,174
singlet/doubletdoublet
Overlap geneFrem3, Smarca5, Gab1, LOC666237
Upstream geneOtud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075, Gypa
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I17.bB6Ng01-066I17.g
ACCDH885694DH885695
length727472
definitionDH885694|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I17, 5' end.DH885695|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,176,108 - 83,176,834)(83,379,697 - 83,380,174)
sequence
gaattcacaatagcatgttacttcctcaagagaaacctatggaactaata
gtgaaaagattgacattagcaggaaaattattctattccaagagctataa
acattgctgcacaaagtagtgaagacactagccaaggacttctgatagat
ccatggctcctggggtgagacctttcctcagcacaaccaccccaactcaa
tcacctgcatgaacccatgaaagtgcccctgctatgtgttcctcctggct
gatttctgtccgggtgttcctgctgttgtcttcaacttgtctcccttcta
ggcccagcataacccactgcagagtagcatggcagaacagaacaaacaaa
ggtcggaaaatccagcttcagggtcatcatgtgagaaaacacccatagaa
tcaactaagcaaggcttataggggctcatagagtctgaagcaacaatcag
ggagtccccatgggtctgacctaggtcctctacatatgtcatgggtgtgg
agcttgatgttcttgtaggactcctatcagtgggtgttgtctctgactct
ttttctacttttgggatccatttccccctactgagttgctttgtccagtc
ttgacatgagggtatgtgtctagtcttattgtatcttattatgccatgtt
tggttgataaccctgggagacctgctcttttttgaagggaaagtaaagta
gatctgggggagaggggaggtagtggg
cttctgtagatcaggccagacttgaacttttgagagatcgacctgctctg
cctcctcccaagtgctgggattacaggtgtgaaataccacacccagattt
ttaactttaattttttaaaagtatcttaggagatatttggtaagttgacc
tttgtccagcaggtttgaagctttttctgggaggcagactttcttctggg
aggttttgtgtgtgtgtgtgttgtgcgggtgcctatgtaaacccataaat
gcttctaccaggacagacagggtaaactatggcccctgtagagtgatgct
cacattataaagatgccatatctgtagcctgggatctgtgtctgtccttg
acacgtgatcaagaccaaaactttgggttctaatattagaattgaaagag
aaggcttctagatgtgttcatttgtactgttttgtttgtttgtttttgtt
tgtgtgtgtgtgtgtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83176108_83176834
seq2: B6Ng01-066I17.b_43_769

seq1  GAATTCACAATAGCATGTTACTTCCTCAAGAGAAACCTATGGAACTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATAGCATGTTACTTCCTCAAGAGAAACCTATGGAACTAATA  50

seq1  GTGAAAAGATTGACATTAGCAGGAAAATTATTCTATTCCAAGAGCTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGATTGACATTAGCAGGAAAATTATTCTATTCCAAGAGCTATAA  100

seq1  ACATTGCTGCACAAAGTAGTGAAGACACTAGCCAAGGACTTCTGATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTGCACAAAGTAGTGAAGACACTAGCCAAGGACTTCTGATAGAT  150

seq1  CCATGGCTCCTGGGGTGAGACCTTTCCTCAGCACAACCACCCCAACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCCTGGGGTGAGACCTTTCCTCAGCACAACCACCCCAACTCAA  200

seq1  TCACCTGCATGAACCCATGAAAGTGCCCCTGCTATGTGTTCCTCCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCATGAACCCATGAAAGTGCCCCTGCTATGTGTTCCTCCTGGCT  250

seq1  GATTTCTGTCCGGGTGTTCCTGCTGTTGTCTTCAACTTGTCTCCCTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGTCCGGGTGTTCCTGCTGTTGTCTTCAACTTGTCTCCCTTCTA  300

seq1  GGCCCAGCATAACCCACTGCAGAGTAGCATGGCAGAACAGAACAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCATAACCCACTGCAGAGTAGCATGGCAGAACAGAACAAACAAA  350

seq1  GGTCGGAAAATCCAGCTTCAGGGTCATCATGTGAGAAAACACCCATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGAAAATCCAGCTTCAGGGTCATCATGTGAGAAAACACCCATAGAA  400

seq1  TCAACTAAGCAAGGCTTATAGGGGCTCATAGAGTCTGAAGCAACAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAGCAAGGCTTATAGGGGCTCATAGAGTCTGAAGCAACAATCAG  450

seq1  GGAGTCCCCATGGGTCTGACCTAGGTCCTCTACATATGTCATGGGTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCCATGGGTCTGACCTAGGTCCTCTACATATGTCATGGGTGTGG  500

seq1  AGCTTGATGTTCTTGTAGGACTCCTATCAGTGGGTGTTGTCTCTGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATGTTCTTGTAGGACTCCTATCAGTGGGTGTTGTCTCTGACTCT  550

seq1  TTTTCTACTTTTGGGATCCATTTCCCCCTACTGAGTTGCTTTGTCCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTTTTGGGATCCATTTCCCCCTACTGAGTTGCTTTGTCCAGTC  600

seq1  TTGACATGAGGGTATGTGTCTAGTCTTATTGTATCTTATTATGCCATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGAGGGTATGTGTCTAGTCTTATTGTATCTTATTATGCCATGTT  650

seq1  TGGTTGATAACCCTGGGAGACCTGCTCTTTTTTGAAGGGAAAGTAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATAACCCTGGGAGACCTGCTCTTTTTTGAAGGGAAAGTAAAGTA  700

seq1  GATCTGGGGGAGAGGGGAGGTAGTGGG  727
      |||||||||||||||||||||||||||
seq2  GATCTGGGGGAGAGGGGAGGTAGTGGG  727

seq1: chr8_83379697_83380174
seq2: B6Ng01-066I17.g_68_545 (reverse)

seq1  CCCCCCCACACACACACACACAAACAAAAACAAACAAACAAAACAGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACACACACACACACAAACAAAAACAAACAAACAAAACAGTACA  50

seq1  AATGAACACATCTAGAAGCCTTCTCTTTCAATTCTAATATTAGAACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACACATCTAGAAGCCTTCTCTTTCAATTCTAATATTAGAACCCAA  100

seq1  AGTTTTGGTCTTGATCACGTGTCAAGGACAGACACAGATCCCAGGCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGTCTTGATCACGTGTCAAGGACAGACACAGATCCCAGGCTACA  150

seq1  GATATGGCATCTTTATAATGTGAGCATCACTCTACAGGGGCCATAGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGCATCTTTATAATGTGAGCATCACTCTACAGGGGCCATAGTTTA  200

seq1  CCCTGTCTGTCCTGGTAGAAGCATTTATGGGTTTACATAGGCACCCGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTGTCCTGGTAGAAGCATTTATGGGTTTACATAGGCACCCGCAC  250

seq1  AACACACACACACACAAAACCTCCCAGAAGAAAGTCTGCCTCCCAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACAAAACCTCCCAGAAGAAAGTCTGCCTCCCAGAAAA  300

seq1  AGCTTCAAACCTGCTGGACAAAGGTCAACTTACCAAATATCTCCTAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAACCTGCTGGACAAAGGTCAACTTACCAAATATCTCCTAAGAT  350

seq1  ACTTTTAAAAAATTAAAGTTAAAAATCTGGGTGTGGTATTTCACACCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAAATTAAAGTTAAAAATCTGGGTGTGGTATTTCACACCTGT  400

seq1  AATCCCAGCACTTGGGAGGAGGCAGAGCAGGTCGATCTCTCAAAAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGAGGCAGAGCAGGTCGATCTCTCAAAAGTTCA  450

seq1  AGTCTGGCCTGATCTACAGAAGGAATTC  478
      ||||||||||||||||||||||||||||
seq2  AGTCTGGCCTGATCTACAGAAGGAATTC  478