BAC Information

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BAC

Clone NameB6Ng01-068A19
Chromosome2 (Build37)8 (Build37)
Map Location 151,275,863 - 151,276,38718,058,043 - 18,059,256
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839
Downstream geneLOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068A19.bB6Ng01-068A19.g
ACCDH886754DH886755
length1,0551,201
definitionDH886754|Mus musculus domesticus DNA, BAC clone: B6Ng01-068A19, 5' end.DH886755|Mus musculus domesticus DNA, BAC clone: B6Ng01-068A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(151,275,863 - 151,276,387)(18,058,043 - 18,059,256)
sequence
gaattcctaatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgcttttactgcatctaatgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcttatattaaacc
atccctgcattcctggaataaagcctacttgatcaggacagatgattgct
ttaatgtgttcttggatttggttagcaagaattttattgagtttttttgc
atcgatattcataagagaaattggtttgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcataaaatgagttg
ggtattgtaccttctacttctattttgtgaaatagtttttgcagaactgg
aagtagatcttctttgaaggtctgatagaactctgcactaaacccgtctt
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttagaggatatgggactgtttagattgttaacttgatcctgatttaact
ttggtacctggtatctgtccagaaatttgtccatttcctccaggttttcc
agttttcttgagtatagcctttttgtagaaggatctgatggtgttttgga
tttcttcaggatctgttgttatgtctcccttttcatttctgattttgtta
attaggattttgtccccatgccctctagtgagtctaggaaagggtttatc
tatcttgttgattttctcaaagaaccaactccttgtttggttaattcttt
gaatagttcttcttgtttctacttagttgatttcacccctgagtttgatt
atttcctgacttctactcctcttgggtgaatttgcttcctttttttctag
agcttttagatgtgttgtcagcagctagtgtgtgctctctccagtttctt
cttggagcactcagagctatgagtttccctctagaatgctttcattgtgt
cccataggtttgggtatgtcgtgcttcatttcataactctaaaagtcttt
aattt
gaattctcaacacgggggaatctatctatctgtgctttgaatttgatgct
ctgtcaggaattcctaaaactagaaataagtgtttgaggaagccctctga
ggtacaatataagaaagggccctattaagattttttaatacagtgagaag
gaacattcagaaatctgaaagtaggaagatcagagtagatttatagataa
atcccagaggacagacactaaggcatagatacatactggtaaatgagttg
cccagcatctttaattaaaaggaaaaaaaaaagtgctgtctagcctcaat
ttgacaaaagtggcaaagacactgtgacagatctgggactctgggttact
aaggatctcagggtctccaaaaagtaaagtccacaggatgtctctatagt
gaggcagagctgatgcgatctcagcagtgatagaaagagtagagttggag
tgggcagctggtacctacttgtgacaatgaatcagaccttgactaaggta
caatctgactaagcagagagcttcccatcacaacaatctcagacacacaa
acctccagcatgactgtgttcattctatggacatgctggcaatagacttc
tgaaacttgcctaaagtggaccagctctcctctgatgtctccatgcatca
ggatattccattgagacttctcaaagactcagaaagctaaggataaaaca
acaacacttttagctgcaggctagatgtggggtgcagagaagtcaggtaa
agaggggaatttgtcccaaatctatattgcgcaggatcgccatgtctcaa
catgacctaaagtccatgtaccaatgagtaggctagaaacagccctgcca
ataccacagctttcctggtatagtctagtattctatttgatcagtgttct
aacttcctaaaaggaaggcatcatgcctcaggaaacaatatagattcttc
tatggtgagagctatactagctttggccagttttagctctttgtgataga
ggtttggtgggactctctagggagacaaataacttccatgcaatgagagg
aaacatctatgtatagatatctcagactccatatctgtgtcaacttactg
gctgctacctaggtaggctgaggacaaaggggagctcttaggatagtcag
atgagagaaaggtgtactggagtgtgtgcttctatcaatcagatgacaga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151275863_151276387
seq2: B6Ng01-068A19.b_42_567 (reverse)

seq1  ATCTAAACAGTCCCATATACGCTAAAGAAATAGAAGCAGTTATAAATAGT  50
      |||||||||||||||||| | |||||||||||||||||||||| ||||||
seq2  ATCTAAACAGTCCCATATCCTCTAAAGAAATAGAAGCAGTTATTAATAGT  50

seq1  CTCCCAGCC-AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCT  99
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CTCCCAGCCAAAAAAAAGCCCAGGACAAGACGGGTTTAGTGCAGAGTTCT  100

seq1  ATCAGACCTTCAAAGAGGATCTAATTCCAGTTCTGCACAAACTATTTCAC  149
      |||||||||||||||| |||||| ||||||||||||| ||||||||||||
seq2  ATCAGACCTTCAAAGAAGATCTACTTCCAGTTCTGCAAAAACTATTTCAC  150

seq1  AAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTAT  199
      ||||||||||||||||||||  ||||||||||||||||||||||||| ||
seq2  AAAATAGAAGTAGAAGGTACAATACCCAACTCATTTTATGAAGCCACAAT  200

seq1  TACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGACAACTTCA  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCA  250

seq1  GACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTC  299
       ||||||||||||||||||||||||||||||||  |||||||||||||| 
seq2  AACCAATTTCTCTTATGAATATCGATGCAAAAAAACTCAATAAAATTCTT  300

seq1  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  349
      ||||||| ||||||||||||||||||||||||||||  |||||| |||||
seq2  GCTAACCAAATCCAAGAACACATTAAAGCAATCATCTGTCCTGATCAAGT  350

seq1  AGGTTTTATTGCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  399
      ||| |||||| |||| ||||||||||||||||||||| ||||||||||||
seq2  AGGCTTTATTCCAGGAATGCAGGGATGGTTTAATATAAGAAAATCCATCA  400

seq1  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGACCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  450

seq1  TTGTTAGAAGAGGAGAAAGCATTTGGCAAAATCCAAAACCCATTCATGAT  499
      |  ||||| |  |  |||||||| | ||| |||||| |||||||||||||
seq2  TCATTAGATGCAGTAAAAGCATTCGACAAGATCCAACACCCATTCATGAT  500

seq1  AAAAGTCTTGGAAAGATCAGGAATTC  525
      ||||||||||||||||| ||||||||
seq2  AAAAGTCTTGGAAAGATTAGGAATTC  526

seq1: chr8_18058043_18059256
seq2: B6Ng01-068A19.g_66_1266

seq1  GAATTCTCAACACGGGGGAATCTATCTATCTGTGCTTTGAATTTGATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACACGGGGGAATCTATCTATCTGTGCTTTGAATTTGATGCT  50

seq1  CTGTCAGGAATTCCTAAAACTAGAAATAAGTGTTTGAGGAAGCCCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGAATTCCTAAAACTAGAAATAAGTGTTTGAGGAAGCCCTCTGA  100

seq1  GGTACAATATAAGAAAGGGCCCTATTAAGATTTTTTAATACAGTGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAATATAAGAAAGGGCCCTATTAAGATTTTTTAATACAGTGAGAAG  150

seq1  GAACATTCAGAAATCTGAAAGTAGGAAGATCAGAGTAGATTTATAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCAGAAATCTGAAAGTAGGAAGATCAGAGTAGATTTATAGATAA  200

seq1  ATCCCAGAGGACAGACACTAAGGCATAGATACATACTGGTAAATGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAGGACAGACACTAAGGCATAGATACATACTGGTAAATGAGTTG  250

seq1  CCCAGCATCTTTAATTAAAAGGAAAAAAAAAAGTGCTGTCTAGCCTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCTTTAATTAAAAGGAAAAAAAAAAGTGCTGTCTAGCCTCAAT  300

seq1  TTGACAAAAGTGGCAAAGACACTGTGACAGATCTGGGACTCTGGGTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAAGTGGCAAAGACACTGTGACAGATCTGGGACTCTGGGTTACT  350

seq1  AAGGATCTCAGGGTCTCCAAAAAGTAAAGTCCACAGGATGTCTCTATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTCAGGGTCTCCAAAAAGTAAAGTCCACAGGATGTCTCTATAGT  400

seq1  GAGGCAGAGCTGATGCGATCTCAGCAGTGATAGAAAGAGTAGAGTTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGCTGATGCGATCTCAGCAGTGATAGAAAGAGTAGAGTTGGAG  450

seq1  TGGGCAGCTGGTACCTACTTGTGACAATGAATCAGACCTTGACTAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCTGGTACCTACTTGTGACAATGAATCAGACCTTGACTAAGGTA  500

seq1  CAATCTGACTAAGCAGAGAGCTTCCCATCACAACAATCTCAGACACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGACTAAGCAGAGAGCTTCCCATCACAACAATCTCAGACACACAA  550

seq1  ACCTCCAGCATGACTGTGTTCATTCTATGGACATGCTGGCAATAGACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGCATGACTGTGTTCATTCTATGGACATGCTGGCAATAGACTTC  600

seq1  TGAAACTTGCCTAAAGTGGACCAGCTCTCCTCTGATGTCTCCATGCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTGCCTAAAGTGGACCAGCTCTCCTCTGATGTCTCCATGCATCA  650

seq1  GGATATTCCATTGAGACTTCTCAAAGACTCAGAAAGCTAAGGATAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCCATTGAGACTTCTCAAAGACTCAGAAAGCTAAGGATAAAACA  700

seq1  ACAACACTTTTAGCTGCAGGCTAGATGTGGGGTGCAGAGAAGTCAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTTTTAGCTGCAGGCTAGATGTGGGGTGCAGAGAAGTCAGGTAA  750

seq1  AGAGGGGAATTTGTCCCAAATCTATATTGCGCAGGATCGCCATGTCTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAATTTGTCCCAAATCTATATTGCGCAGGATCGCCATGTCTCAA  800

seq1  CATGACCTAAAGTCCATGTACCAATGAGTAGGCTAGAAACAGCCCTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTAAAGTCCATGTACCAATGAGTAGGCTAGAAACAGCCCTGCCA  850

seq1  ATACCACAGCTTTCCTGGTATAGTCTAGTATTCTATTTGATCAGTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACAGCTTTCCTGGTATAGTCTAGTATTCTATTTGATCAGTGTTCT  900

seq1  AACTTCCTAAAAGGAAGGCATCATGCCTCAGGAAACAATATAGATTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTAAAAGGAAGGCATCATGCCTCAGGAAACAATATAGATTCTTC  950

seq1  TATGGTGAGAGCTATAACTAGCTTTGGCCAGTTTTAGCTCTTTGTGATAA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TATGGTGAGAGCTAT-ACTAGCTTTGGCCAGTTTTAGCTCTTTGTGATAG  999

seq1  GAGATTGGTGGGACTCTCTAGGGAGACAGATAAACTCCCATGCAATGAGA  1050
        | |||||||||||||||||||||||| || |||| |||||||||||||
seq2  AGGTTTGGTGGGACTCTCTAGGGAGACAAAT-AACTTCCATGCAATGAGA  1048

seq1  GGAAACAATCTATGTATTTAGATATCTCAGACATCAATATCTGTGTCAAC  1100
      |||||| |||||||||  |||||||||||||| || ||||||||||||||
seq2  GGAAAC-ATCTATGTA--TAGATATCTCAGAC-TCCATATCTGTGTCAAC  1094

seq1  TTACTGTGCTGGTAACCTAGGTAGGCTGAAGGGACAAAGGGGAGCTTCTT  1150
      |||||| |||| | |||||||||||||||  |||||||||||||| ||||
seq2  TTACTG-GCTGCT-ACCTAGGTAGGCTGA--GGACAAAGGGGAGC-TCTT  1139

seq1  ATGAGTAGTCAAGAGGAGAG-AAGGTGGTATCATGTATGTGCTTCTATCA  1199
      | || ||||| ||| ||||| ||||||   |   || |||||||||||||
seq2  AGGA-TAGTC-AGATGAGAGAAAGGTGTACTGGAGTGTGTGCTTCTATCA  1187

seq1  ATCAGAGCAACAGAA  1214
      ||||||   ||||||
seq2  ATCAGA-TGACAGAA  1201