BAC Information

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BAC

Clone NameB6Ng01-069G11
Chromosome8 (Build37)
Map Location 40,539,976 - 40,689,227
singlet/doubletdoublet
Overlap geneLOC434304, Msr1
Upstream geneTusc3, LOC100038974, LOC632066, EG621335
Downstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069G11.bB6Ng01-069G11.g
ACCDH887725DH887726
length1,110783
definitionDH887725|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G11, 5' end.DH887726|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,688,111 - 40,689,227)(40,539,976 - 40,540,612)
sequence
gaattcagttaagtcatcttacatccaaaactacacgtatacggttaagt
gtggaatattaacctgaactttccaaattagagaagaaggctctgttttt
ctctttagataaaaatagatgctgaatgccctgttcagaagcatcaatta
tcccatcttttatagggtataatgaaaagtgaaaatgctatgttctgttg
ccatgctaactagaaagggtgtttcaatcaagcaaggggaccgtgtaagt
aaacgctgagaggcaccattgaagagtcctgttgcttatctgtggtgtgt
cagcatgctgtgctcgtgatcaagaaaagagacaggatgtgaattttggg
catcttcttttgaacctcatacaatgaaatgaaaataaagtgtacttgct
ttgatttacactgaaaactcaactcgatcttaagtaaacttctggtcttt
cttaaaacattcagttgattaaagttaaacccttcccccatcactagcta
attatactaatggatattcagagaatacttgctgcataccaggtgctttt
tttgtgcattttcaaatctaatgctcggaaagccagtggggtaaatgcta
ttactatcaacatttaatgaactggaatctaaagttaactgcttataaag
aaaaacagcacaaactcaaagctatgcttcccagtttccaaattctcatg
actccgtgaaatgcttccaaatcactgaagtattctatgcatataaaccc
taaaaatattgaatatggaggtggagagagagagtagacttgtaattagc
atttctatttttccagaatgagtcttataatttgaagatctcaaggagat
aaaaatgtgtagattaggtccagaattccagaagtatactactgagtcat
ctgtatttatgtttccccagcgtaactactgtgtatattgcctgcgttcc
ccacctcgagtctattactcagacacatcgtcttcctgggagtgctctca
gacttccatatcactatggagagttacttacgtgcaccttgcggagaact
actgctaatagtctacctttttttcagtaactgaccagtttacacactta
gttctctcga
gaattctttgtttagctctgtgccccattttttaatggggttatttggtt
ttctggagtccatcttcttgagttctttatatatattttatattagtacc
ctatctgatttaggattggtaaagatcctttcccaatctgttggtggctt
gagactaccccatctgggtgtccatccgataatcagccaccaaacccaga
cactattgcataggccagcaagattttgctgaaaggaccctgatatagct
gtctcttgtgaggctatgccagtacctggaaaacacagaagtggatgctc
acagtcagctattggatggaacagagggcccccagtggaggagctaaaga
aagtacccaaggacctgaaggggtctgcaaccctataggtggaacaacaa
tatgaactaaccagtacccccagagctcttgtctctagctgcatgtgtag
cagaagacaggctagtaggccatcattgggaagagaggccccttggtctt
gcaaactttatatgctccagtacaggggaacaccagggccaagaactggg
agtgtgtgggtaggagagcagaggggcgcggtataggggacttttgggat
agcatttgaaatgtaaatgaagtaaatacctaataaaaaaattggaaaaa
agagaaaagaataactatttttaagaagagtacttctttgacatgtttgc
aagtacatagttgttttgacgactttgaatattattttgttttaatctgt
gtgtatctgtgtggggtgggaagaggggagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40688111_40689227
seq2: B6Ng01-069G11.b_46_1155 (reverse)

seq1  TCTAGAGAAACTAAAGTGTGAAAACTGAGTCAGTTACTGAAATAAAGGTA  50
      || |||| |||| ||||||| |||||| |||||||||||||| |||||||
seq2  TCGAGAG-AACT-AAGTGTGTAAACTG-GTCAGTTACTGAAAAAAAGGTA  47

seq1  GACTATTAGCAGGTAGCTCTTCGCAAGGTGCACGTAAGTAACTCTCATTA  100
      ||||||||||| |||| ||| |||||||||||||||||||||||||  ||
seq2  GACTATTAGCA-GTAGTTCTCCGCAAGGTGCACGTAAGTAACTCTCCATA  96

seq1  GTGATAATGGAAGTCTTGAGAGCACTTCCAGGAAGACGATGTGTCTGAGT  150
      ||||| ||||||||| |||||||||| |||||||||||||||||||||||
seq2  GTGAT-ATGGAAGTC-TGAGAGCACTCCCAGGAAGACGATGTGTCTGAGT  144

seq1  AATAGACTCGAGGTGGGGAACGCAGGCAATATACACAGTAGTTACGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTCGAGGTGGGGAACGCAGGCAATATACACAGTAGTTACGCTGG  194

seq1  TGGAAACATAAATACAGATGACTCAGTAGTATACTTCTGGAATTCTGGAC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGAAACATAAATACAGATGACTCAGTAGTATACTTCTGGAATTCTGGAC  243

seq1  CTAATCTACACATTTTTATCTCCTTGAGATCTTCAAATTATAAGACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTACACATTTTTATCTCCTTGAGATCTTCAAATTATAAGACTCAT  293

seq1  TCTGGAAAAATAGAAATGCTAATTACAAGTCTACTCTCTCTCTCCACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAATAGAAATGCTAATTACAAGTCTACTCTCTCTCTCCACCTC  343

seq1  CATATTCAATATTTTTAGGGTTTATATGCATAGAATACTTCAGTGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCAATATTTTTAGGGTTTATATGCATAGAATACTTCAGTGATTTG  393

seq1  GAAGCATTTCACGGAGTCATGAGAATTTGGAAACTGGGAAGCATAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTCACGGAGTCATGAGAATTTGGAAACTGGGAAGCATAGCTTT  443

seq1  GAGTTTGTGCTGTTTTTCTTTATAAGCAGTTAACTTTAGATTCCAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGCTGTTTTTCTTTATAAGCAGTTAACTTTAGATTCCAGTTCA  493

seq1  TTAAATGTTGATAGTAATAGCATTTACCCCACTGGCTTTCCGAGCATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTGATAGTAATAGCATTTACCCCACTGGCTTTCCGAGCATTAG  543

seq1  ATTTGAAAATGCACAAAAAAAGCACCTGGTATGCAGCAAGTATTCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATGCACAAAAAAAGCACCTGGTATGCAGCAAGTATTCTCTGA  593

seq1  ATATCCATTAGTATAATTAGCTAGTGATGGGGGAAGGGTTTAACTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATTAGTATAATTAGCTAGTGATGGGGGAAGGGTTTAACTTTAAT  643

seq1  CAACTGAATGTTTTAAGAAAGACCAGAAGTTTACTTAAGATCGAGTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAATGTTTTAAGAAAGACCAGAAGTTTACTTAAGATCGAGTTGAG  693

seq1  TTTTCAGTGTAAATCAAAGCAAGTACACTTTATTTTCATTTCATTGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTAAATCAAAGCAAGTACACTTTATTTTCATTTCATTGTATG  743

seq1  AGGTTCAAAAGAAGATGCCCAAAATTCACATCCTGTCTCTTTTCTTGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAAAAGAAGATGCCCAAAATTCACATCCTGTCTCTTTTCTTGATC  793

seq1  ACGAGCACAGCATGCTGACACACCACAGATAAGCAACAGGACTCTTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCACAGCATGCTGACACACCACAGATAAGCAACAGGACTCTTCAAT  843

seq1  GGTGCCTCTCAGCGTTTACTTACACGGTCCCCTTGCTTGATTGAAACACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCTCAGCGTTTACTTACACGGTCCCCTTGCTTGATTGAAACACC  893

seq1  CTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCACTTTTCATTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCACTTTTCATTATA  943

seq1  CCCTATAAAAGATGGGATAATTGATGCTTCTGAACAGGGCATTCAGCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAAAAGATGGGATAATTGATGCTTCTGAACAGGGCATTCAGCATC  993

seq1  TATTTTTATCTAAAGAGAAAAACAGAGCCTTCTTCTCTAATTTGGAAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATCTAAAGAGAAAAACAGAGCCTTCTTCTCTAATTTGGAAAGT  1043

seq1  TCAGGTTAATATTCCACACTTAACCGTATACGTGTAGTTTTGGATGTAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTAATATTCCACACTTAACCGTATACGTGTAGTTTTGGATGTAAG  1093

seq1  ATGACTTAACTGAATTC  1117
      |||||||||||||||||
seq2  ATGACTTAACTGAATTC  1110

seq1: chr8_40539976_40540612
seq2: B6Ng01-069G11.g_211_849

seq1  TGGCTTGAGACTACCCCATCTGGGTGTCCATCCGATAATCAGCCACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAGACTACCCCATCTGGGTGTCCATCCGATAATCAGCCACCAAA  50

seq1  CCCAGACACTATTGCATAGGCCAGCAAGATTTTGCTGAAAGGACCCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACTATTGCATAGGCCAGCAAGATTTTGCTGAAAGGACCCTGAT  100

seq1  ATAGCTGTCTCTTGTGAGGCTATGCCAGTACCTGGAAAACACAGAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTCTCTTGTGAGGCTATGCCAGTACCTGGAAAACACAGAAGTGG  150

seq1  ATGCTCACAGTCAGCTATTGGATGGAACAGAGGGCCCCCAGTGGAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACAGTCAGCTATTGGATGGAACAGAGGGCCCCCAGTGGAGGAGC  200

seq1  TAAAGAAAGTACCCAAGGACCTGAAGGGGTCTGCAACCCTATAGGTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGTACCCAAGGACCTGAAGGGGTCTGCAACCCTATAGGTGGAA  250

seq1  CAACAATATGAACTAACCAGTACCCCCAGAGCTCTTGTCTCTAGCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATGAACTAACCAGTACCCCCAGAGCTCTTGTCTCTAGCTGCAT  300

seq1  GTGTAGCAGAAGACAGGCTAGTAGGCCATCATTGGGAAGAGAGGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAGAAGACAGGCTAGTAGGCCATCATTGGGAAGAGAGGCCCCTT  350

seq1  GGTCTTGCAAACTTTATATGCTCCAGTACAGGGGAACACCAGGGCCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCAAACTTTATATGCTCCAGTACAGGGGAACACCAGGGCCAAGA  400

seq1  ACTGGGAGTGTGTGGGTAGGAGAGCAGAGGGGCGCGGTATAGGGGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGTGTGTGGGTAGGAGAGCAGAGGGGCGCGGTATAGGGGACTTT  450

seq1  TGGGATAGCATTTGAAATGTAAATGAAGTAAATACCTAATAAAAAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCATTTGAAATGTAAATGAAGTAAATACCTAATAAAAAAATTG  500

seq1  GAAAAAAGAGAAAAGAATAACTATTTTTAAGAAGAGTACTTCTTTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAGAAAAGAATAACTATTTTTAAGAAGAGTACTTCTTTGACAT  550

seq1  GTTTGCAAGTACATAGTTGTTTTGACGACTTTGAATATTA-TTTGTTTTA  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTGCAAGTACATAGTTGTTTTGACGACTTTGAATATTATTTTGTTTTA  600

seq1  ATCTGTGTGTATCTGTGTGGGGT-GGAAGAGGGGAGTGT  637
      ||||||||||||||||||||||| |||||||||||||||
seq2  ATCTGTGTGTATCTGTGTGGGGTGGGAAGAGGGGAGTGT  639